proteus  1.5.1
C/C++/Fortran libraries
ADR.cpp
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1 /* Generated by Cython 0.25.2 */
2 
3 #define PY_SSIZE_T_CLEAN
4 #include "Python.h"
5 #ifndef Py_PYTHON_H
6  #error Python headers needed to compile C extensions, please install development version of Python.
7 #elif PY_VERSION_HEX < 0x02060000 || (0x03000000 <= PY_VERSION_HEX && PY_VERSION_HEX < 0x03020000)
8  #error Cython requires Python 2.6+ or Python 3.2+.
9 #else
10 #define CYTHON_ABI "0_25_2"
11 #include <stddef.h>
12 #ifndef offsetof
13  #define offsetof(type, member) ( (size_t) & ((type*)0) -> member )
14 #endif
15 #if !defined(WIN32) && !defined(MS_WINDOWS)
16  #ifndef __stdcall
17  #define __stdcall
18  #endif
19  #ifndef __cdecl
20  #define __cdecl
21  #endif
22  #ifndef __fastcall
23  #define __fastcall
24  #endif
25 #endif
26 #ifndef DL_IMPORT
27  #define DL_IMPORT(t) t
28 #endif
29 #ifndef DL_EXPORT
30  #define DL_EXPORT(t) t
31 #endif
32 #ifndef HAVE_LONG_LONG
33  #if PY_VERSION_HEX >= 0x03030000 || (PY_MAJOR_VERSION == 2 && PY_VERSION_HEX >= 0x02070000)
34  #define HAVE_LONG_LONG
35  #endif
36 #endif
37 #ifndef PY_LONG_LONG
38  #define PY_LONG_LONG LONG_LONG
39 #endif
40 #ifndef Py_HUGE_VAL
41  #define Py_HUGE_VAL HUGE_VAL
42 #endif
43 #ifdef PYPY_VERSION
44  #define CYTHON_COMPILING_IN_PYPY 1
45  #define CYTHON_COMPILING_IN_PYSTON 0
46  #define CYTHON_COMPILING_IN_CPYTHON 0
47  #undef CYTHON_USE_TYPE_SLOTS
48  #define CYTHON_USE_TYPE_SLOTS 0
49  #undef CYTHON_USE_ASYNC_SLOTS
50  #define CYTHON_USE_ASYNC_SLOTS 0
51  #undef CYTHON_USE_PYLIST_INTERNALS
52  #define CYTHON_USE_PYLIST_INTERNALS 0
53  #undef CYTHON_USE_UNICODE_INTERNALS
54  #define CYTHON_USE_UNICODE_INTERNALS 0
55  #undef CYTHON_USE_UNICODE_WRITER
56  #define CYTHON_USE_UNICODE_WRITER 0
57  #undef CYTHON_USE_PYLONG_INTERNALS
58  #define CYTHON_USE_PYLONG_INTERNALS 0
59  #undef CYTHON_AVOID_BORROWED_REFS
60  #define CYTHON_AVOID_BORROWED_REFS 1
61  #undef CYTHON_ASSUME_SAFE_MACROS
62  #define CYTHON_ASSUME_SAFE_MACROS 0
63  #undef CYTHON_UNPACK_METHODS
64  #define CYTHON_UNPACK_METHODS 0
65  #undef CYTHON_FAST_THREAD_STATE
66  #define CYTHON_FAST_THREAD_STATE 0
67  #undef CYTHON_FAST_PYCALL
68  #define CYTHON_FAST_PYCALL 0
69 #elif defined(PYSTON_VERSION)
70  #define CYTHON_COMPILING_IN_PYPY 0
71  #define CYTHON_COMPILING_IN_PYSTON 1
72  #define CYTHON_COMPILING_IN_CPYTHON 0
73  #ifndef CYTHON_USE_TYPE_SLOTS
74  #define CYTHON_USE_TYPE_SLOTS 1
75  #endif
76  #undef CYTHON_USE_ASYNC_SLOTS
77  #define CYTHON_USE_ASYNC_SLOTS 0
78  #undef CYTHON_USE_PYLIST_INTERNALS
79  #define CYTHON_USE_PYLIST_INTERNALS 0
80  #ifndef CYTHON_USE_UNICODE_INTERNALS
81  #define CYTHON_USE_UNICODE_INTERNALS 1
82  #endif
83  #undef CYTHON_USE_UNICODE_WRITER
84  #define CYTHON_USE_UNICODE_WRITER 0
85  #undef CYTHON_USE_PYLONG_INTERNALS
86  #define CYTHON_USE_PYLONG_INTERNALS 0
87  #ifndef CYTHON_AVOID_BORROWED_REFS
88  #define CYTHON_AVOID_BORROWED_REFS 0
89  #endif
90  #ifndef CYTHON_ASSUME_SAFE_MACROS
91  #define CYTHON_ASSUME_SAFE_MACROS 1
92  #endif
93  #ifndef CYTHON_UNPACK_METHODS
94  #define CYTHON_UNPACK_METHODS 1
95  #endif
96  #undef CYTHON_FAST_THREAD_STATE
97  #define CYTHON_FAST_THREAD_STATE 0
98  #undef CYTHON_FAST_PYCALL
99  #define CYTHON_FAST_PYCALL 0
100 #else
101  #define CYTHON_COMPILING_IN_PYPY 0
102  #define CYTHON_COMPILING_IN_PYSTON 0
103  #define CYTHON_COMPILING_IN_CPYTHON 1
104  #ifndef CYTHON_USE_TYPE_SLOTS
105  #define CYTHON_USE_TYPE_SLOTS 1
106  #endif
107  #if PY_MAJOR_VERSION < 3
108  #undef CYTHON_USE_ASYNC_SLOTS
109  #define CYTHON_USE_ASYNC_SLOTS 0
110  #elif !defined(CYTHON_USE_ASYNC_SLOTS)
111  #define CYTHON_USE_ASYNC_SLOTS 1
112  #endif
113  #if PY_VERSION_HEX < 0x02070000
114  #undef CYTHON_USE_PYLONG_INTERNALS
115  #define CYTHON_USE_PYLONG_INTERNALS 0
116  #elif !defined(CYTHON_USE_PYLONG_INTERNALS)
117  #define CYTHON_USE_PYLONG_INTERNALS 1
118  #endif
119  #ifndef CYTHON_USE_PYLIST_INTERNALS
120  #define CYTHON_USE_PYLIST_INTERNALS 1
121  #endif
122  #ifndef CYTHON_USE_UNICODE_INTERNALS
123  #define CYTHON_USE_UNICODE_INTERNALS 1
124  #endif
125  #if PY_VERSION_HEX < 0x030300F0
126  #undef CYTHON_USE_UNICODE_WRITER
127  #define CYTHON_USE_UNICODE_WRITER 0
128  #elif !defined(CYTHON_USE_UNICODE_WRITER)
129  #define CYTHON_USE_UNICODE_WRITER 1
130  #endif
131  #ifndef CYTHON_AVOID_BORROWED_REFS
132  #define CYTHON_AVOID_BORROWED_REFS 0
133  #endif
134  #ifndef CYTHON_ASSUME_SAFE_MACROS
135  #define CYTHON_ASSUME_SAFE_MACROS 1
136  #endif
137  #ifndef CYTHON_UNPACK_METHODS
138  #define CYTHON_UNPACK_METHODS 1
139  #endif
140  #ifndef CYTHON_FAST_THREAD_STATE
141  #define CYTHON_FAST_THREAD_STATE 1
142  #endif
143  #ifndef CYTHON_FAST_PYCALL
144  #define CYTHON_FAST_PYCALL 1
145  #endif
146 #endif
147 #if !defined(CYTHON_FAST_PYCCALL)
148 #define CYTHON_FAST_PYCCALL (CYTHON_FAST_PYCALL && PY_VERSION_HEX >= 0x030600B1)
149 #endif
150 #if CYTHON_USE_PYLONG_INTERNALS
151  #include "longintrepr.h"
152  #undef SHIFT
153  #undef BASE
154  #undef MASK
155 #endif
156 #if CYTHON_COMPILING_IN_PYPY && PY_VERSION_HEX < 0x02070600 && !defined(Py_OptimizeFlag)
157  #define Py_OptimizeFlag 0
158 #endif
159 #define __PYX_BUILD_PY_SSIZE_T "n"
160 #define CYTHON_FORMAT_SSIZE_T "z"
161 #if PY_MAJOR_VERSION < 3
162  #define __Pyx_BUILTIN_MODULE_NAME "__builtin__"
163  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
164  PyCode_New(a+k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
165  #define __Pyx_DefaultClassType PyClass_Type
166 #else
167  #define __Pyx_BUILTIN_MODULE_NAME "builtins"
168  #define __Pyx_PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)\
169  PyCode_New(a, k, l, s, f, code, c, n, v, fv, cell, fn, name, fline, lnos)
170  #define __Pyx_DefaultClassType PyType_Type
171 #endif
172 #ifndef Py_TPFLAGS_CHECKTYPES
173  #define Py_TPFLAGS_CHECKTYPES 0
174 #endif
175 #ifndef Py_TPFLAGS_HAVE_INDEX
176  #define Py_TPFLAGS_HAVE_INDEX 0
177 #endif
178 #ifndef Py_TPFLAGS_HAVE_NEWBUFFER
179  #define Py_TPFLAGS_HAVE_NEWBUFFER 0
180 #endif
181 #ifndef Py_TPFLAGS_HAVE_FINALIZE
182  #define Py_TPFLAGS_HAVE_FINALIZE 0
183 #endif
184 #ifndef METH_FASTCALL
185  #define METH_FASTCALL 0x80
186  typedef PyObject *(*__Pyx_PyCFunctionFast) (PyObject *self, PyObject **args,
187  Py_ssize_t nargs, PyObject *kwnames);
188 #else
189  #define __Pyx_PyCFunctionFast _PyCFunctionFast
190 #endif
191 #if CYTHON_FAST_PYCCALL
192 #define __Pyx_PyFastCFunction_Check(func)\
193  ((PyCFunction_Check(func) && (METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST)))))
194 #else
195 #define __Pyx_PyFastCFunction_Check(func) 0
196 #endif
197 #if PY_VERSION_HEX > 0x03030000 && defined(PyUnicode_KIND)
198  #define CYTHON_PEP393_ENABLED 1
199  #define __Pyx_PyUnicode_READY(op) (likely(PyUnicode_IS_READY(op)) ?\
200  0 : _PyUnicode_Ready((PyObject *)(op)))
201  #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_LENGTH(u)
202  #define __Pyx_PyUnicode_READ_CHAR(u, i) PyUnicode_READ_CHAR(u, i)
203  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) PyUnicode_MAX_CHAR_VALUE(u)
204  #define __Pyx_PyUnicode_KIND(u) PyUnicode_KIND(u)
205  #define __Pyx_PyUnicode_DATA(u) PyUnicode_DATA(u)
206  #define __Pyx_PyUnicode_READ(k, d, i) PyUnicode_READ(k, d, i)
207  #define __Pyx_PyUnicode_WRITE(k, d, i, ch) PyUnicode_WRITE(k, d, i, ch)
208  #define __Pyx_PyUnicode_IS_TRUE(u) (0 != (likely(PyUnicode_IS_READY(u)) ? PyUnicode_GET_LENGTH(u) : PyUnicode_GET_SIZE(u)))
209 #else
210  #define CYTHON_PEP393_ENABLED 0
211  #define PyUnicode_1BYTE_KIND 1
212  #define PyUnicode_2BYTE_KIND 2
213  #define PyUnicode_4BYTE_KIND 4
214  #define __Pyx_PyUnicode_READY(op) (0)
215  #define __Pyx_PyUnicode_GET_LENGTH(u) PyUnicode_GET_SIZE(u)
216  #define __Pyx_PyUnicode_READ_CHAR(u, i) ((Py_UCS4)(PyUnicode_AS_UNICODE(u)[i]))
217  #define __Pyx_PyUnicode_MAX_CHAR_VALUE(u) ((sizeof(Py_UNICODE) == 2) ? 65535 : 1114111)
218  #define __Pyx_PyUnicode_KIND(u) (sizeof(Py_UNICODE))
219  #define __Pyx_PyUnicode_DATA(u) ((void*)PyUnicode_AS_UNICODE(u))
220  #define __Pyx_PyUnicode_READ(k, d, i) ((void)(k), (Py_UCS4)(((Py_UNICODE*)d)[i]))
221  #define __Pyx_PyUnicode_WRITE(k, d, i, ch) (((void)(k)), ((Py_UNICODE*)d)[i] = ch)
222  #define __Pyx_PyUnicode_IS_TRUE(u) (0 != PyUnicode_GET_SIZE(u))
223 #endif
224 #if CYTHON_COMPILING_IN_PYPY
225  #define __Pyx_PyUnicode_Concat(a, b) PyNumber_Add(a, b)
226  #define __Pyx_PyUnicode_ConcatSafe(a, b) PyNumber_Add(a, b)
227 #else
228  #define __Pyx_PyUnicode_Concat(a, b) PyUnicode_Concat(a, b)
229  #define __Pyx_PyUnicode_ConcatSafe(a, b) ((unlikely((a) == Py_None) || unlikely((b) == Py_None)) ?\
230  PyNumber_Add(a, b) : __Pyx_PyUnicode_Concat(a, b))
231 #endif
232 #if CYTHON_COMPILING_IN_PYPY && !defined(PyUnicode_Contains)
233  #define PyUnicode_Contains(u, s) PySequence_Contains(u, s)
234 #endif
235 #if CYTHON_COMPILING_IN_PYPY && !defined(PyByteArray_Check)
236  #define PyByteArray_Check(obj) PyObject_TypeCheck(obj, &PyByteArray_Type)
237 #endif
238 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Format)
239  #define PyObject_Format(obj, fmt) PyObject_CallMethod(obj, "__format__", "O", fmt)
240 #endif
241 #if CYTHON_COMPILING_IN_PYPY && !defined(PyObject_Malloc)
242  #define PyObject_Malloc(s) PyMem_Malloc(s)
243  #define PyObject_Free(p) PyMem_Free(p)
244  #define PyObject_Realloc(p) PyMem_Realloc(p)
245 #endif
246 #if CYTHON_COMPILING_IN_PYSTON
247  #define __Pyx_PyCode_HasFreeVars(co) PyCode_HasFreeVars(co)
248  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) PyFrame_SetLineNumber(frame, lineno)
249 #else
250  #define __Pyx_PyCode_HasFreeVars(co) (PyCode_GetNumFree(co) > 0)
251  #define __Pyx_PyFrame_SetLineNumber(frame, lineno) (frame)->f_lineno = (lineno)
252 #endif
253 #define __Pyx_PyString_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : __Pyx_PyString_Format(a, b))
254 #define __Pyx_PyUnicode_FormatSafe(a, b) ((unlikely((a) == Py_None)) ? PyNumber_Remainder(a, b) : PyUnicode_Format(a, b))
255 #if PY_MAJOR_VERSION >= 3
256  #define __Pyx_PyString_Format(a, b) PyUnicode_Format(a, b)
257 #else
258  #define __Pyx_PyString_Format(a, b) PyString_Format(a, b)
259 #endif
260 #if PY_MAJOR_VERSION < 3 && !defined(PyObject_ASCII)
261  #define PyObject_ASCII(o) PyObject_Repr(o)
262 #endif
263 #if PY_MAJOR_VERSION >= 3
264  #define PyBaseString_Type PyUnicode_Type
265  #define PyStringObject PyUnicodeObject
266  #define PyString_Type PyUnicode_Type
267  #define PyString_Check PyUnicode_Check
268  #define PyString_CheckExact PyUnicode_CheckExact
269 #endif
270 #if PY_MAJOR_VERSION >= 3
271  #define __Pyx_PyBaseString_Check(obj) PyUnicode_Check(obj)
272  #define __Pyx_PyBaseString_CheckExact(obj) PyUnicode_CheckExact(obj)
273 #else
274  #define __Pyx_PyBaseString_Check(obj) (PyString_Check(obj) || PyUnicode_Check(obj))
275  #define __Pyx_PyBaseString_CheckExact(obj) (PyString_CheckExact(obj) || PyUnicode_CheckExact(obj))
276 #endif
277 #ifndef PySet_CheckExact
278  #define PySet_CheckExact(obj) (Py_TYPE(obj) == &PySet_Type)
279 #endif
280 #define __Pyx_TypeCheck(obj, type) PyObject_TypeCheck(obj, (PyTypeObject *)type)
281 #define __Pyx_PyException_Check(obj) __Pyx_TypeCheck(obj, PyExc_Exception)
282 #if PY_MAJOR_VERSION >= 3
283  #define PyIntObject PyLongObject
284  #define PyInt_Type PyLong_Type
285  #define PyInt_Check(op) PyLong_Check(op)
286  #define PyInt_CheckExact(op) PyLong_CheckExact(op)
287  #define PyInt_FromString PyLong_FromString
288  #define PyInt_FromUnicode PyLong_FromUnicode
289  #define PyInt_FromLong PyLong_FromLong
290  #define PyInt_FromSize_t PyLong_FromSize_t
291  #define PyInt_FromSsize_t PyLong_FromSsize_t
292  #define PyInt_AsLong PyLong_AsLong
293  #define PyInt_AS_LONG PyLong_AS_LONG
294  #define PyInt_AsSsize_t PyLong_AsSsize_t
295  #define PyInt_AsUnsignedLongMask PyLong_AsUnsignedLongMask
296  #define PyInt_AsUnsignedLongLongMask PyLong_AsUnsignedLongLongMask
297  #define PyNumber_Int PyNumber_Long
298 #endif
299 #if PY_MAJOR_VERSION >= 3
300  #define PyBoolObject PyLongObject
301 #endif
302 #if PY_MAJOR_VERSION >= 3 && CYTHON_COMPILING_IN_PYPY
303  #ifndef PyUnicode_InternFromString
304  #define PyUnicode_InternFromString(s) PyUnicode_FromString(s)
305  #endif
306 #endif
307 #if PY_VERSION_HEX < 0x030200A4
308  typedef long Py_hash_t;
309  #define __Pyx_PyInt_FromHash_t PyInt_FromLong
310  #define __Pyx_PyInt_AsHash_t PyInt_AsLong
311 #else
312  #define __Pyx_PyInt_FromHash_t PyInt_FromSsize_t
313  #define __Pyx_PyInt_AsHash_t PyInt_AsSsize_t
314 #endif
315 #if PY_MAJOR_VERSION >= 3
316  #define __Pyx_PyMethod_New(func, self, klass) ((self) ? PyMethod_New(func, self) : PyInstanceMethod_New(func))
317 #else
318  #define __Pyx_PyMethod_New(func, self, klass) PyMethod_New(func, self, klass)
319 #endif
320 #if CYTHON_USE_ASYNC_SLOTS
321  #if PY_VERSION_HEX >= 0x030500B1
322  #define __Pyx_PyAsyncMethodsStruct PyAsyncMethods
323  #define __Pyx_PyType_AsAsync(obj) (Py_TYPE(obj)->tp_as_async)
324  #else
325  typedef struct {
326  unaryfunc am_await;
327  unaryfunc am_aiter;
328  unaryfunc am_anext;
329  } __Pyx_PyAsyncMethodsStruct;
330  #define __Pyx_PyType_AsAsync(obj) ((__Pyx_PyAsyncMethodsStruct*) (Py_TYPE(obj)->tp_reserved))
331  #endif
332 #else
333  #define __Pyx_PyType_AsAsync(obj) NULL
334 #endif
335 #ifndef CYTHON_RESTRICT
336  #if defined(__GNUC__)
337  #define CYTHON_RESTRICT __restrict__
338  #elif defined(_MSC_VER) && _MSC_VER >= 1400
339  #define CYTHON_RESTRICT __restrict
340  #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
341  #define CYTHON_RESTRICT restrict
342  #else
343  #define CYTHON_RESTRICT
344  #endif
345 #endif
346 #ifndef CYTHON_UNUSED
347 # if defined(__GNUC__)
348 # if !(defined(__cplusplus)) || (__GNUC__ > 3 || (__GNUC__ == 3 && __GNUC_MINOR__ >= 4))
349 # define CYTHON_UNUSED __attribute__ ((__unused__))
350 # else
351 # define CYTHON_UNUSED
352 # endif
353 # elif defined(__ICC) || (defined(__INTEL_COMPILER) && !defined(_MSC_VER))
354 # define CYTHON_UNUSED __attribute__ ((__unused__))
355 # else
356 # define CYTHON_UNUSED
357 # endif
358 #endif
359 #ifndef CYTHON_MAYBE_UNUSED_VAR
360 # if defined(__cplusplus)
361  template<class T> void CYTHON_MAYBE_UNUSED_VAR( const T& ) { }
362 # else
363 # define CYTHON_MAYBE_UNUSED_VAR(x) (void)(x)
364 # endif
365 #endif
366 #ifndef CYTHON_NCP_UNUSED
367 # if CYTHON_COMPILING_IN_CPYTHON
368 # define CYTHON_NCP_UNUSED
369 # else
370 # define CYTHON_NCP_UNUSED CYTHON_UNUSED
371 # endif
372 #endif
373 #define __Pyx_void_to_None(void_result) ((void)(void_result), Py_INCREF(Py_None), Py_None)
374 
375 #ifndef __cplusplus
376  #error "Cython files generated with the C++ option must be compiled with a C++ compiler."
377 #endif
378 #ifndef CYTHON_INLINE
379  #if defined(__clang__)
380  #define CYTHON_INLINE __inline__ __attribute__ ((__unused__))
381  #else
382  #define CYTHON_INLINE inline
383  #endif
384 #endif
385 template<typename T>
386 void __Pyx_call_destructor(T& x) {
387  x.~T();
388 }
389 template<typename T>
390 class __Pyx_FakeReference {
391  public:
392  __Pyx_FakeReference() : ptr(NULL) { }
393  __Pyx_FakeReference(const T& ref) : ptr(const_cast<T*>(&ref)) { }
394  T *operator->() { return ptr; }
395  T *operator&() { return ptr; }
396  operator T&() { return *ptr; }
397  template<typename U> bool operator ==(U other) { return *ptr == other; }
398  template<typename U> bool operator !=(U other) { return *ptr != other; }
399  private:
400  T *ptr;
401 };
402 
403 #if defined(WIN32) || defined(MS_WINDOWS)
404  #define _USE_MATH_DEFINES
405 #endif
406 #include <math.h>
407 #ifdef NAN
408 #define __PYX_NAN() ((float) NAN)
409 #else
410 static CYTHON_INLINE float __PYX_NAN() {
411  float value;
412  memset(&value, 0xFF, sizeof(value));
413  return value;
414 }
415 #endif
416 #if defined(__CYGWIN__) && defined(_LDBL_EQ_DBL)
417 #define __Pyx_truncl trunc
418 #else
419 #define __Pyx_truncl truncl
420 #endif
421 
422 
423 #define __PYX_ERR(f_index, lineno, Ln_error) \
424 { \
425  __pyx_filename = __pyx_f[f_index]; __pyx_lineno = lineno; __pyx_clineno = __LINE__; goto Ln_error; \
426 }
427 
428 #if PY_MAJOR_VERSION >= 3
429  #define __Pyx_PyNumber_Divide(x,y) PyNumber_TrueDivide(x,y)
430  #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceTrueDivide(x,y)
431 #else
432  #define __Pyx_PyNumber_Divide(x,y) PyNumber_Divide(x,y)
433  #define __Pyx_PyNumber_InPlaceDivide(x,y) PyNumber_InPlaceDivide(x,y)
434 #endif
435 
436 #ifndef __PYX_EXTERN_C
437  #ifdef __cplusplus
438  #define __PYX_EXTERN_C extern "C"
439  #else
440  #define __PYX_EXTERN_C extern
441  #endif
442 #endif
443 
444 #define __PYX_HAVE__ADR
445 #define __PYX_HAVE_API__ADR
446 #include <string.h>
447 #include <stdio.h>
448 #include <stdlib.h>
449 #include "numpy/arrayobject.h"
450 #include "numpy/ufuncobject.h"
451 #include "ADR.h"
452 #ifdef _OPENMP
453 #include <omp.h>
454 #endif /* _OPENMP */
455 
456 #ifdef PYREX_WITHOUT_ASSERTIONS
457 #define CYTHON_WITHOUT_ASSERTIONS
458 #endif
459 
460 typedef struct {PyObject **p; const char *s; const Py_ssize_t n; const char* encoding;
461  const char is_unicode; const char is_str; const char intern; } __Pyx_StringTabEntry;
462 
463 #define __PYX_DEFAULT_STRING_ENCODING_IS_ASCII 0
464 #define __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT 0
465 #define __PYX_DEFAULT_STRING_ENCODING ""
466 #define __Pyx_PyObject_FromString __Pyx_PyBytes_FromString
467 #define __Pyx_PyObject_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
468 #define __Pyx_uchar_cast(c) ((unsigned char)c)
469 #define __Pyx_long_cast(x) ((long)x)
470 #define __Pyx_fits_Py_ssize_t(v, type, is_signed) (\
471  (sizeof(type) < sizeof(Py_ssize_t)) ||\
472  (sizeof(type) > sizeof(Py_ssize_t) &&\
473  likely(v < (type)PY_SSIZE_T_MAX ||\
474  v == (type)PY_SSIZE_T_MAX) &&\
475  (!is_signed || likely(v > (type)PY_SSIZE_T_MIN ||\
476  v == (type)PY_SSIZE_T_MIN))) ||\
477  (sizeof(type) == sizeof(Py_ssize_t) &&\
478  (is_signed || likely(v < (type)PY_SSIZE_T_MAX ||\
479  v == (type)PY_SSIZE_T_MAX))) )
480 #if defined (__cplusplus) && __cplusplus >= 201103L
481  #include <cstdlib>
482  #define __Pyx_sst_abs(value) std::abs(value)
483 #elif SIZEOF_INT >= SIZEOF_SIZE_T
484  #define __Pyx_sst_abs(value) abs(value)
485 #elif SIZEOF_LONG >= SIZEOF_SIZE_T
486  #define __Pyx_sst_abs(value) labs(value)
487 #elif defined (_MSC_VER) && defined (_M_X64)
488  #define __Pyx_sst_abs(value) _abs64(value)
489 #elif defined (__STDC_VERSION__) && __STDC_VERSION__ >= 199901L
490  #define __Pyx_sst_abs(value) llabs(value)
491 #elif defined (__GNUC__)
492  #define __Pyx_sst_abs(value) __builtin_llabs(value)
493 #else
494  #define __Pyx_sst_abs(value) ((value<0) ? -value : value)
495 #endif
496 static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject*);
497 static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject*, Py_ssize_t* length);
498 #define __Pyx_PyByteArray_FromString(s) PyByteArray_FromStringAndSize((const char*)s, strlen((const char*)s))
499 #define __Pyx_PyByteArray_FromStringAndSize(s, l) PyByteArray_FromStringAndSize((const char*)s, l)
500 #define __Pyx_PyBytes_FromString PyBytes_FromString
501 #define __Pyx_PyBytes_FromStringAndSize PyBytes_FromStringAndSize
502 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char*);
503 #if PY_MAJOR_VERSION < 3
504  #define __Pyx_PyStr_FromString __Pyx_PyBytes_FromString
505  #define __Pyx_PyStr_FromStringAndSize __Pyx_PyBytes_FromStringAndSize
506 #else
507  #define __Pyx_PyStr_FromString __Pyx_PyUnicode_FromString
508  #define __Pyx_PyStr_FromStringAndSize __Pyx_PyUnicode_FromStringAndSize
509 #endif
510 #define __Pyx_PyObject_AsSString(s) ((signed char*) __Pyx_PyObject_AsString(s))
511 #define __Pyx_PyObject_AsUString(s) ((unsigned char*) __Pyx_PyObject_AsString(s))
512 #define __Pyx_PyObject_FromCString(s) __Pyx_PyObject_FromString((const char*)s)
513 #define __Pyx_PyBytes_FromCString(s) __Pyx_PyBytes_FromString((const char*)s)
514 #define __Pyx_PyByteArray_FromCString(s) __Pyx_PyByteArray_FromString((const char*)s)
515 #define __Pyx_PyStr_FromCString(s) __Pyx_PyStr_FromString((const char*)s)
516 #define __Pyx_PyUnicode_FromCString(s) __Pyx_PyUnicode_FromString((const char*)s)
517 #if PY_MAJOR_VERSION < 3
518 static CYTHON_INLINE size_t __Pyx_Py_UNICODE_strlen(const Py_UNICODE *u)
519 {
520  const Py_UNICODE *u_end = u;
521  while (*u_end++) ;
522  return (size_t)(u_end - u - 1);
523 }
524 #else
525 #define __Pyx_Py_UNICODE_strlen Py_UNICODE_strlen
526 #endif
527 #define __Pyx_PyUnicode_FromUnicode(u) PyUnicode_FromUnicode(u, __Pyx_Py_UNICODE_strlen(u))
528 #define __Pyx_PyUnicode_FromUnicodeAndLength PyUnicode_FromUnicode
529 #define __Pyx_PyUnicode_AsUnicode PyUnicode_AsUnicode
530 #define __Pyx_NewRef(obj) (Py_INCREF(obj), obj)
531 #define __Pyx_Owned_Py_None(b) __Pyx_NewRef(Py_None)
532 #define __Pyx_PyBool_FromLong(b) ((b) ? __Pyx_NewRef(Py_True) : __Pyx_NewRef(Py_False))
533 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject*);
534 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x);
535 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject*);
536 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t);
537 #if CYTHON_ASSUME_SAFE_MACROS
538 #define __pyx_PyFloat_AsDouble(x) (PyFloat_CheckExact(x) ? PyFloat_AS_DOUBLE(x) : PyFloat_AsDouble(x))
539 #else
540 #define __pyx_PyFloat_AsDouble(x) PyFloat_AsDouble(x)
541 #endif
542 #define __pyx_PyFloat_AsFloat(x) ((float) __pyx_PyFloat_AsDouble(x))
543 #if PY_MAJOR_VERSION >= 3
544 #define __Pyx_PyNumber_Int(x) (PyLong_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Long(x))
545 #else
546 #define __Pyx_PyNumber_Int(x) (PyInt_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Int(x))
547 #endif
548 #define __Pyx_PyNumber_Float(x) (PyFloat_CheckExact(x) ? __Pyx_NewRef(x) : PyNumber_Float(x))
549 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
550 static int __Pyx_sys_getdefaultencoding_not_ascii;
551 static int __Pyx_init_sys_getdefaultencoding_params(void) {
552  PyObject* sys;
553  PyObject* default_encoding = NULL;
554  PyObject* ascii_chars_u = NULL;
555  PyObject* ascii_chars_b = NULL;
556  const char* default_encoding_c;
557  sys = PyImport_ImportModule("sys");
558  if (!sys) goto bad;
559  default_encoding = PyObject_CallMethod(sys, (char*) "getdefaultencoding", NULL);
560  Py_DECREF(sys);
561  if (!default_encoding) goto bad;
562  default_encoding_c = PyBytes_AsString(default_encoding);
563  if (!default_encoding_c) goto bad;
564  if (strcmp(default_encoding_c, "ascii") == 0) {
565  __Pyx_sys_getdefaultencoding_not_ascii = 0;
566  } else {
567  char ascii_chars[128];
568  int c;
569  for (c = 0; c < 128; c++) {
570  ascii_chars[c] = c;
571  }
572  __Pyx_sys_getdefaultencoding_not_ascii = 1;
573  ascii_chars_u = PyUnicode_DecodeASCII(ascii_chars, 128, NULL);
574  if (!ascii_chars_u) goto bad;
575  ascii_chars_b = PyUnicode_AsEncodedString(ascii_chars_u, default_encoding_c, NULL);
576  if (!ascii_chars_b || !PyBytes_Check(ascii_chars_b) || memcmp(ascii_chars, PyBytes_AS_STRING(ascii_chars_b), 128) != 0) {
577  PyErr_Format(
578  PyExc_ValueError,
579  "This module compiled with c_string_encoding=ascii, but default encoding '%.200s' is not a superset of ascii.",
580  default_encoding_c);
581  goto bad;
582  }
583  Py_DECREF(ascii_chars_u);
584  Py_DECREF(ascii_chars_b);
585  }
586  Py_DECREF(default_encoding);
587  return 0;
588 bad:
589  Py_XDECREF(default_encoding);
590  Py_XDECREF(ascii_chars_u);
591  Py_XDECREF(ascii_chars_b);
592  return -1;
593 }
594 #endif
595 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT && PY_MAJOR_VERSION >= 3
596 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_DecodeUTF8(c_str, size, NULL)
597 #else
598 #define __Pyx_PyUnicode_FromStringAndSize(c_str, size) PyUnicode_Decode(c_str, size, __PYX_DEFAULT_STRING_ENCODING, NULL)
599 #if __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT
600 static char* __PYX_DEFAULT_STRING_ENCODING;
601 static int __Pyx_init_sys_getdefaultencoding_params(void) {
602  PyObject* sys;
603  PyObject* default_encoding = NULL;
604  char* default_encoding_c;
605  sys = PyImport_ImportModule("sys");
606  if (!sys) goto bad;
607  default_encoding = PyObject_CallMethod(sys, (char*) (const char*) "getdefaultencoding", NULL);
608  Py_DECREF(sys);
609  if (!default_encoding) goto bad;
610  default_encoding_c = PyBytes_AsString(default_encoding);
611  if (!default_encoding_c) goto bad;
612  __PYX_DEFAULT_STRING_ENCODING = (char*) malloc(strlen(default_encoding_c));
613  if (!__PYX_DEFAULT_STRING_ENCODING) goto bad;
614  strcpy(__PYX_DEFAULT_STRING_ENCODING, default_encoding_c);
615  Py_DECREF(default_encoding);
616  return 0;
617 bad:
618  Py_XDECREF(default_encoding);
619  return -1;
620 }
621 #endif
622 #endif
623 
624 
625 /* Test for GCC > 2.95 */
626 #if defined(__GNUC__) && (__GNUC__ > 2 || (__GNUC__ == 2 && (__GNUC_MINOR__ > 95)))
627  #define likely(x) __builtin_expect(!!(x), 1)
628  #define unlikely(x) __builtin_expect(!!(x), 0)
629 #else /* !__GNUC__ or GCC < 2.95 */
630  #define likely(x) (x)
631  #define unlikely(x) (x)
632 #endif /* __GNUC__ */
633 
634 static PyObject *__pyx_m;
635 static PyObject *__pyx_d;
636 static PyObject *__pyx_b;
637 static PyObject *__pyx_empty_tuple;
638 static PyObject *__pyx_empty_bytes;
639 static PyObject *__pyx_empty_unicode;
640 static int __pyx_lineno;
641 static int __pyx_clineno = 0;
642 static const char * __pyx_cfilenm= __FILE__;
643 static const char *__pyx_filename;
644 
645 /* Header.proto */
646 #if !defined(CYTHON_CCOMPLEX)
647  #if defined(__cplusplus)
648  #define CYTHON_CCOMPLEX 1
649  #elif defined(_Complex_I)
650  #define CYTHON_CCOMPLEX 1
651  #else
652  #define CYTHON_CCOMPLEX 0
653  #endif
654 #endif
655 #if CYTHON_CCOMPLEX
656  #ifdef __cplusplus
657  #include <complex>
658  #else
659  #include <complex.h>
660  #endif
661 #endif
662 #if CYTHON_CCOMPLEX && !defined(__cplusplus) && defined(__sun__) && defined(__GNUC__)
663  #undef _Complex_I
664  #define _Complex_I 1.0fj
665 #endif
666 
667 
668 static const char *__pyx_f[] = {
669  "proteus/ADR.pyx",
670  "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd",
671  "linux2/lib/python2.7/site-packages/Cython/Includes/cpython/type.pxd",
672 };
673 
674 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":725
675  * # in Cython to enable them only on the right systems.
676  *
677  * ctypedef npy_int8 int8_t # <<<<<<<<<<<<<<
678  * ctypedef npy_int16 int16_t
679  * ctypedef npy_int32 int32_t
680  */
681 typedef npy_int8 __pyx_t_5numpy_int8_t;
682 
683 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":726
684  *
685  * ctypedef npy_int8 int8_t
686  * ctypedef npy_int16 int16_t # <<<<<<<<<<<<<<
687  * ctypedef npy_int32 int32_t
688  * ctypedef npy_int64 int64_t
689  */
690 typedef npy_int16 __pyx_t_5numpy_int16_t;
691 
692 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":727
693  * ctypedef npy_int8 int8_t
694  * ctypedef npy_int16 int16_t
695  * ctypedef npy_int32 int32_t # <<<<<<<<<<<<<<
696  * ctypedef npy_int64 int64_t
697  * #ctypedef npy_int96 int96_t
698  */
699 typedef npy_int32 __pyx_t_5numpy_int32_t;
700 
701 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":728
702  * ctypedef npy_int16 int16_t
703  * ctypedef npy_int32 int32_t
704  * ctypedef npy_int64 int64_t # <<<<<<<<<<<<<<
705  * #ctypedef npy_int96 int96_t
706  * #ctypedef npy_int128 int128_t
707  */
708 typedef npy_int64 __pyx_t_5numpy_int64_t;
709 
710 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":732
711  * #ctypedef npy_int128 int128_t
712  *
713  * ctypedef npy_uint8 uint8_t # <<<<<<<<<<<<<<
714  * ctypedef npy_uint16 uint16_t
715  * ctypedef npy_uint32 uint32_t
716  */
717 typedef npy_uint8 __pyx_t_5numpy_uint8_t;
718 
719 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":733
720  *
721  * ctypedef npy_uint8 uint8_t
722  * ctypedef npy_uint16 uint16_t # <<<<<<<<<<<<<<
723  * ctypedef npy_uint32 uint32_t
724  * ctypedef npy_uint64 uint64_t
725  */
726 typedef npy_uint16 __pyx_t_5numpy_uint16_t;
727 
728 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":734
729  * ctypedef npy_uint8 uint8_t
730  * ctypedef npy_uint16 uint16_t
731  * ctypedef npy_uint32 uint32_t # <<<<<<<<<<<<<<
732  * ctypedef npy_uint64 uint64_t
733  * #ctypedef npy_uint96 uint96_t
734  */
735 typedef npy_uint32 __pyx_t_5numpy_uint32_t;
736 
737 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":735
738  * ctypedef npy_uint16 uint16_t
739  * ctypedef npy_uint32 uint32_t
740  * ctypedef npy_uint64 uint64_t # <<<<<<<<<<<<<<
741  * #ctypedef npy_uint96 uint96_t
742  * #ctypedef npy_uint128 uint128_t
743  */
744 typedef npy_uint64 __pyx_t_5numpy_uint64_t;
745 
746 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":739
747  * #ctypedef npy_uint128 uint128_t
748  *
749  * ctypedef npy_float32 float32_t # <<<<<<<<<<<<<<
750  * ctypedef npy_float64 float64_t
751  * #ctypedef npy_float80 float80_t
752  */
753 typedef npy_float32 __pyx_t_5numpy_float32_t;
754 
755 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":740
756  *
757  * ctypedef npy_float32 float32_t
758  * ctypedef npy_float64 float64_t # <<<<<<<<<<<<<<
759  * #ctypedef npy_float80 float80_t
760  * #ctypedef npy_float128 float128_t
761  */
762 typedef npy_float64 __pyx_t_5numpy_float64_t;
763 
764 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":749
765  * # The int types are mapped a bit surprising --
766  * # numpy.int corresponds to 'l' and numpy.long to 'q'
767  * ctypedef npy_long int_t # <<<<<<<<<<<<<<
768  * ctypedef npy_longlong long_t
769  * ctypedef npy_longlong longlong_t
770  */
771 typedef npy_long __pyx_t_5numpy_int_t;
772 
773 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":750
774  * # numpy.int corresponds to 'l' and numpy.long to 'q'
775  * ctypedef npy_long int_t
776  * ctypedef npy_longlong long_t # <<<<<<<<<<<<<<
777  * ctypedef npy_longlong longlong_t
778  *
779  */
780 typedef npy_longlong __pyx_t_5numpy_long_t;
781 
782 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":751
783  * ctypedef npy_long int_t
784  * ctypedef npy_longlong long_t
785  * ctypedef npy_longlong longlong_t # <<<<<<<<<<<<<<
786  *
787  * ctypedef npy_ulong uint_t
788  */
789 typedef npy_longlong __pyx_t_5numpy_longlong_t;
790 
791 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":753
792  * ctypedef npy_longlong longlong_t
793  *
794  * ctypedef npy_ulong uint_t # <<<<<<<<<<<<<<
795  * ctypedef npy_ulonglong ulong_t
796  * ctypedef npy_ulonglong ulonglong_t
797  */
798 typedef npy_ulong __pyx_t_5numpy_uint_t;
799 
800 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":754
801  *
802  * ctypedef npy_ulong uint_t
803  * ctypedef npy_ulonglong ulong_t # <<<<<<<<<<<<<<
804  * ctypedef npy_ulonglong ulonglong_t
805  *
806  */
807 typedef npy_ulonglong __pyx_t_5numpy_ulong_t;
808 
809 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":755
810  * ctypedef npy_ulong uint_t
811  * ctypedef npy_ulonglong ulong_t
812  * ctypedef npy_ulonglong ulonglong_t # <<<<<<<<<<<<<<
813  *
814  * ctypedef npy_intp intp_t
815  */
816 typedef npy_ulonglong __pyx_t_5numpy_ulonglong_t;
817 
818 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":757
819  * ctypedef npy_ulonglong ulonglong_t
820  *
821  * ctypedef npy_intp intp_t # <<<<<<<<<<<<<<
822  * ctypedef npy_uintp uintp_t
823  *
824  */
825 typedef npy_intp __pyx_t_5numpy_intp_t;
826 
827 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":758
828  *
829  * ctypedef npy_intp intp_t
830  * ctypedef npy_uintp uintp_t # <<<<<<<<<<<<<<
831  *
832  * ctypedef npy_double float_t
833  */
834 typedef npy_uintp __pyx_t_5numpy_uintp_t;
835 
836 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":760
837  * ctypedef npy_uintp uintp_t
838  *
839  * ctypedef npy_double float_t # <<<<<<<<<<<<<<
840  * ctypedef npy_double double_t
841  * ctypedef npy_longdouble longdouble_t
842  */
843 typedef npy_double __pyx_t_5numpy_float_t;
844 
845 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":761
846  *
847  * ctypedef npy_double float_t
848  * ctypedef npy_double double_t # <<<<<<<<<<<<<<
849  * ctypedef npy_longdouble longdouble_t
850  *
851  */
852 typedef npy_double __pyx_t_5numpy_double_t;
853 
854 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":762
855  * ctypedef npy_double float_t
856  * ctypedef npy_double double_t
857  * ctypedef npy_longdouble longdouble_t # <<<<<<<<<<<<<<
858  *
859  * ctypedef npy_cfloat cfloat_t
860  */
861 typedef npy_longdouble __pyx_t_5numpy_longdouble_t;
862 /* Declarations.proto */
863 #if CYTHON_CCOMPLEX
864  #ifdef __cplusplus
865  typedef ::std::complex< float > __pyx_t_float_complex;
866  #else
867  typedef float _Complex __pyx_t_float_complex;
868  #endif
869 #else
870  typedef struct { float real, imag; } __pyx_t_float_complex;
871 #endif
872 static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float, float);
873 
874 /* Declarations.proto */
875 #if CYTHON_CCOMPLEX
876  #ifdef __cplusplus
877  typedef ::std::complex< double > __pyx_t_double_complex;
878  #else
879  typedef double _Complex __pyx_t_double_complex;
880  #endif
881 #else
882  typedef struct { double real, imag; } __pyx_t_double_complex;
883 #endif
884 static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double, double);
885 
886 
887 /*--- Type declarations ---*/
888 struct __pyx_obj_3ADR_ADR;
889 
890 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":764
891  * ctypedef npy_longdouble longdouble_t
892  *
893  * ctypedef npy_cfloat cfloat_t # <<<<<<<<<<<<<<
894  * ctypedef npy_cdouble cdouble_t
895  * ctypedef npy_clongdouble clongdouble_t
896  */
897 typedef npy_cfloat __pyx_t_5numpy_cfloat_t;
898 
899 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":765
900  *
901  * ctypedef npy_cfloat cfloat_t
902  * ctypedef npy_cdouble cdouble_t # <<<<<<<<<<<<<<
903  * ctypedef npy_clongdouble clongdouble_t
904  *
905  */
906 typedef npy_cdouble __pyx_t_5numpy_cdouble_t;
907 
908 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":766
909  * ctypedef npy_cfloat cfloat_t
910  * ctypedef npy_cdouble cdouble_t
911  * ctypedef npy_clongdouble clongdouble_t # <<<<<<<<<<<<<<
912  *
913  * ctypedef npy_cdouble complex_t
914  */
915 typedef npy_clongdouble __pyx_t_5numpy_clongdouble_t;
916 
917 /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":768
918  * ctypedef npy_clongdouble clongdouble_t
919  *
920  * ctypedef npy_cdouble complex_t # <<<<<<<<<<<<<<
921  *
922  * cdef inline object PyArray_MultiIterNew1(a):
923  */
924 typedef npy_cdouble __pyx_t_5numpy_complex_t;
925 
926 /* "ADR.pyx":140
927  *
928  *
929  * cdef class ADR: # <<<<<<<<<<<<<<
930  * """
931  * Optimized ADR member functions
932  */
933 struct __pyx_obj_3ADR_ADR {
934  PyObject_HEAD
935  proteus::cppADR_base *thisptr;
936 };
937 
938 
939 /* --- Runtime support code (head) --- */
940 /* Refnanny.proto */
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964  }
965 #else
966  #define __Pyx_RefNannySetupContext(name, acquire_gil)\
967  __pyx_refnanny = __Pyx_RefNanny->SetupContext((name), __LINE__, __FILE__)
968 #endif
969  #define __Pyx_RefNannyFinishContext()\
970  __Pyx_RefNanny->FinishContext(&__pyx_refnanny)
971  #define __Pyx_INCREF(r) __Pyx_RefNanny->INCREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
972  #define __Pyx_DECREF(r) __Pyx_RefNanny->DECREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
973  #define __Pyx_GOTREF(r) __Pyx_RefNanny->GOTREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
974  #define __Pyx_GIVEREF(r) __Pyx_RefNanny->GIVEREF(__pyx_refnanny, (PyObject *)(r), __LINE__)
975  #define __Pyx_XINCREF(r) do { if((r) != NULL) {__Pyx_INCREF(r); }} while(0)
976  #define __Pyx_XDECREF(r) do { if((r) != NULL) {__Pyx_DECREF(r); }} while(0)
977  #define __Pyx_XGOTREF(r) do { if((r) != NULL) {__Pyx_GOTREF(r); }} while(0)
978  #define __Pyx_XGIVEREF(r) do { if((r) != NULL) {__Pyx_GIVEREF(r);}} while(0)
979 #else
980  #define __Pyx_RefNannyDeclarations
981  #define __Pyx_RefNannySetupContext(name, acquire_gil)
982  #define __Pyx_RefNannyFinishContext()
983  #define __Pyx_INCREF(r) Py_INCREF(r)
984  #define __Pyx_DECREF(r) Py_DECREF(r)
985  #define __Pyx_GOTREF(r)
986  #define __Pyx_GIVEREF(r)
987  #define __Pyx_XINCREF(r) Py_XINCREF(r)
988  #define __Pyx_XDECREF(r) Py_XDECREF(r)
989  #define __Pyx_XGOTREF(r)
990  #define __Pyx_XGIVEREF(r)
991 #endif
992 #define __Pyx_XDECREF_SET(r, v) do {\
993  PyObject *tmp = (PyObject *) r;\
994  r = v; __Pyx_XDECREF(tmp);\
995  } while (0)
996 #define __Pyx_DECREF_SET(r, v) do {\
997  PyObject *tmp = (PyObject *) r;\
998  r = v; __Pyx_DECREF(tmp);\
999  } while (0)
1000 #define __Pyx_CLEAR(r) do { PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);} while(0)
1001 #define __Pyx_XCLEAR(r) do { if((r) != NULL) {PyObject* tmp = ((PyObject*)(r)); r = NULL; __Pyx_DECREF(tmp);}} while(0)
1002 
1003 /* PyObjectGetAttrStr.proto */
1004 #if CYTHON_USE_TYPE_SLOTS
1005 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetAttrStr(PyObject* obj, PyObject* attr_name) {
1006  PyTypeObject* tp = Py_TYPE(obj);
1007  if (likely(tp->tp_getattro))
1008  return tp->tp_getattro(obj, attr_name);
1009 #if PY_MAJOR_VERSION < 3
1010  if (likely(tp->tp_getattr))
1011  return tp->tp_getattr(obj, PyString_AS_STRING(attr_name));
1012 #endif
1013  return PyObject_GetAttr(obj, attr_name);
1014 }
1015 #else
1016 #define __Pyx_PyObject_GetAttrStr(o,n) PyObject_GetAttr(o,n)
1017 #endif
1018 
1019 /* GetBuiltinName.proto */
1020 static PyObject *__Pyx_GetBuiltinName(PyObject *name);
1021 
1022 /* RaiseArgTupleInvalid.proto */
1023 static void __Pyx_RaiseArgtupleInvalid(const char* func_name, int exact,
1024  Py_ssize_t num_min, Py_ssize_t num_max, Py_ssize_t num_found);
1025 
1026 /* RaiseDoubleKeywords.proto */
1027 static void __Pyx_RaiseDoubleKeywordsError(const char* func_name, PyObject* kw_name);
1028 
1029 /* ParseKeywords.proto */
1030 static int __Pyx_ParseOptionalKeywords(PyObject *kwds, PyObject **argnames[],\
1031  PyObject *kwds2, PyObject *values[], Py_ssize_t num_pos_args,\
1032  const char* function_name);
1033 
1034 /* ArgTypeTest.proto */
1035 static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
1036  const char *name, int exact);
1037 
1038 /* PyCFunctionFastCall.proto */
1039 #if CYTHON_FAST_PYCCALL
1040 static CYTHON_INLINE PyObject *__Pyx_PyCFunction_FastCall(PyObject *func, PyObject **args, Py_ssize_t nargs);
1041 #else
1042 #define __Pyx_PyCFunction_FastCall(func, args, nargs) (assert(0), NULL)
1043 #endif
1044 
1045 /* PyFunctionFastCall.proto */
1046 #if CYTHON_FAST_PYCALL
1047 #define __Pyx_PyFunction_FastCall(func, args, nargs)\
1048  __Pyx_PyFunction_FastCallDict((func), (args), (nargs), NULL)
1049 #if 1 || PY_VERSION_HEX < 0x030600B1
1050 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs);
1051 #else
1052 #define __Pyx_PyFunction_FastCallDict(func, args, nargs, kwargs) _PyFunction_FastCallDict(func, args, nargs, kwargs)
1053 #endif
1054 #endif
1055 
1056 /* PyObjectCall.proto */
1057 #if CYTHON_COMPILING_IN_CPYTHON
1058 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw);
1059 #else
1060 #define __Pyx_PyObject_Call(func, arg, kw) PyObject_Call(func, arg, kw)
1061 #endif
1062 
1063 /* PyObjectCallMethO.proto */
1064 #if CYTHON_COMPILING_IN_CPYTHON
1065 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg);
1066 #endif
1067 
1068 /* PyObjectCallOneArg.proto */
1069 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg);
1070 
1071 /* PyObjectCallNoArg.proto */
1072 #if CYTHON_COMPILING_IN_CPYTHON
1073 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func);
1074 #else
1075 #define __Pyx_PyObject_CallNoArg(func) __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL)
1076 #endif
1077 
1078 /* RaiseTooManyValuesToUnpack.proto */
1079 static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected);
1080 
1081 /* RaiseNeedMoreValuesToUnpack.proto */
1082 static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index);
1083 
1084 /* IterFinish.proto */
1085 static CYTHON_INLINE int __Pyx_IterFinish(void);
1086 
1087 /* UnpackItemEndCheck.proto */
1088 static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected);
1089 
1090 /* ExtTypeTest.proto */
1091 static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type);
1092 
1093 /* GetModuleGlobalName.proto */
1094 static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name);
1095 
1096 /* PyObjectSetAttrStr.proto */
1097 #if CYTHON_USE_TYPE_SLOTS
1098 #define __Pyx_PyObject_DelAttrStr(o,n) __Pyx_PyObject_SetAttrStr(o,n,NULL)
1099 static CYTHON_INLINE int __Pyx_PyObject_SetAttrStr(PyObject* obj, PyObject* attr_name, PyObject* value) {
1100  PyTypeObject* tp = Py_TYPE(obj);
1101  if (likely(tp->tp_setattro))
1102  return tp->tp_setattro(obj, attr_name, value);
1103 #if PY_MAJOR_VERSION < 3
1104  if (likely(tp->tp_setattr))
1105  return tp->tp_setattr(obj, PyString_AS_STRING(attr_name), value);
1106 #endif
1107  return PyObject_SetAttr(obj, attr_name, value);
1108 }
1109 #else
1110 #define __Pyx_PyObject_DelAttrStr(o,n) PyObject_DelAttr(o,n)
1111 #define __Pyx_PyObject_SetAttrStr(o,n,v) PyObject_SetAttr(o,n,v)
1112 #endif
1113 
1114 /* ListAppend.proto */
1115 #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
1116 static CYTHON_INLINE int __Pyx_PyList_Append(PyObject* list, PyObject* x) {
1117  PyListObject* L = (PyListObject*) list;
1118  Py_ssize_t len = Py_SIZE(list);
1119  if (likely(L->allocated > len) & likely(len > (L->allocated >> 1))) {
1120  Py_INCREF(x);
1121  PyList_SET_ITEM(list, len, x);
1122  Py_SIZE(list) = len+1;
1123  return 0;
1124  }
1125  return PyList_Append(list, x);
1126 }
1127 #else
1128 #define __Pyx_PyList_Append(L,x) PyList_Append(L,x)
1129 #endif
1130 
1131 /* PyObjectCallMethod1.proto */
1132 static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg);
1133 
1134 /* append.proto */
1135 static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x);
1136 
1137 /* PyIntBinop.proto */
1138 #if !CYTHON_COMPILING_IN_PYPY
1139 static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, long intval, int inplace);
1140 #else
1141 #define __Pyx_PyInt_AddObjC(op1, op2, intval, inplace)\
1142  (inplace ? PyNumber_InPlaceAdd(op1, op2) : PyNumber_Add(op1, op2))
1143 #endif
1144 
1145 /* SliceObject.proto */
1146 #define __Pyx_PyObject_DelSlice(obj, cstart, cstop, py_start, py_stop, py_slice, has_cstart, has_cstop, wraparound)\
1147  __Pyx_PyObject_SetSlice(obj, (PyObject*)NULL, cstart, cstop, py_start, py_stop, py_slice, has_cstart, has_cstop, wraparound)
1148 static CYTHON_INLINE int __Pyx_PyObject_SetSlice(
1149  PyObject* obj, PyObject* value, Py_ssize_t cstart, Py_ssize_t cstop,
1150  PyObject** py_start, PyObject** py_stop, PyObject** py_slice,
1151  int has_cstart, int has_cstop, int wraparound);
1152 
1153 /* GetItemInt.proto */
1154 #define __Pyx_GetItemInt(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1155  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1156  __Pyx_GetItemInt_Fast(o, (Py_ssize_t)i, is_list, wraparound, boundscheck) :\
1157  (is_list ? (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL) :\
1158  __Pyx_GetItemInt_Generic(o, to_py_func(i))))
1159 #define __Pyx_GetItemInt_List(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1160  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1161  __Pyx_GetItemInt_List_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1162  (PyErr_SetString(PyExc_IndexError, "list index out of range"), (PyObject*)NULL))
1163 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
1164  int wraparound, int boundscheck);
1165 #define __Pyx_GetItemInt_Tuple(o, i, type, is_signed, to_py_func, is_list, wraparound, boundscheck)\
1166  (__Pyx_fits_Py_ssize_t(i, type, is_signed) ?\
1167  __Pyx_GetItemInt_Tuple_Fast(o, (Py_ssize_t)i, wraparound, boundscheck) :\
1168  (PyErr_SetString(PyExc_IndexError, "tuple index out of range"), (PyObject*)NULL))
1169 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
1170  int wraparound, int boundscheck);
1171 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j);
1172 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i,
1173  int is_list, int wraparound, int boundscheck);
1174 
1175 /* ListCompAppend.proto */
1176 #if CYTHON_USE_PYLIST_INTERNALS && CYTHON_ASSUME_SAFE_MACROS
1177 static CYTHON_INLINE int __Pyx_ListComp_Append(PyObject* list, PyObject* x) {
1178  PyListObject* L = (PyListObject*) list;
1179  Py_ssize_t len = Py_SIZE(list);
1180  if (likely(L->allocated > len)) {
1181  Py_INCREF(x);
1182  PyList_SET_ITEM(list, len, x);
1183  Py_SIZE(list) = len+1;
1184  return 0;
1185  }
1186  return PyList_Append(list, x);
1187 }
1188 #else
1189 #define __Pyx_ListComp_Append(L,x) PyList_Append(L,x)
1190 #endif
1191 
1192 /* SliceObject.proto */
1193 static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(
1194  PyObject* obj, Py_ssize_t cstart, Py_ssize_t cstop,
1195  PyObject** py_start, PyObject** py_stop, PyObject** py_slice,
1196  int has_cstart, int has_cstop, int wraparound);
1197 
1198 /* Import.proto */
1199 static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level);
1200 
1201 /* ImportFrom.proto */
1202 static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name);
1203 
1204 /* IncludeStringH.proto */
1205 #include <string.h>
1206 
1207 /* BytesEquals.proto */
1208 static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals);
1209 
1210 /* UnicodeEquals.proto */
1211 static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals);
1212 
1213 /* StrEquals.proto */
1214 #if PY_MAJOR_VERSION >= 3
1215 #define __Pyx_PyString_Equals __Pyx_PyUnicode_Equals
1216 #else
1217 #define __Pyx_PyString_Equals __Pyx_PyBytes_Equals
1218 #endif
1219 
1220 /* PyIntBinop.proto */
1221 #if !CYTHON_COMPILING_IN_PYPY
1222 static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, long intval, int inplace);
1223 #else
1224 #define __Pyx_PyInt_EqObjC(op1, op2, intval, inplace)\
1225  PyObject_RichCompare(op1, op2, Py_EQ)
1226  #endif
1227 
1228 /* PyObjectCallMethod0.proto */
1229 static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name);
1230 
1231 /* RaiseNoneIterError.proto */
1232 static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void);
1233 
1234 /* UnpackTupleError.proto */
1235 static void __Pyx_UnpackTupleError(PyObject *, Py_ssize_t index);
1236 
1237 /* UnpackTuple2.proto */
1238 static CYTHON_INLINE int __Pyx_unpack_tuple2(PyObject* tuple, PyObject** value1, PyObject** value2,
1239  int is_tuple, int has_known_size, int decref_tuple);
1240 
1241 /* dict_iter.proto */
1242 static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* dict, int is_dict, PyObject* method_name,
1243  Py_ssize_t* p_orig_length, int* p_is_dict);
1244 static CYTHON_INLINE int __Pyx_dict_iter_next(PyObject* dict_or_iter, Py_ssize_t orig_length, Py_ssize_t* ppos,
1245  PyObject** pkey, PyObject** pvalue, PyObject** pitem, int is_dict);
1246 
1247 /* PyThreadStateGet.proto */
1248 #if CYTHON_FAST_THREAD_STATE
1249 #define __Pyx_PyThreadState_declare PyThreadState *__pyx_tstate;
1250 #define __Pyx_PyThreadState_assign __pyx_tstate = PyThreadState_GET();
1251 #else
1252 #define __Pyx_PyThreadState_declare
1253 #define __Pyx_PyThreadState_assign
1254 #endif
1255 
1256 /* PyErrFetchRestore.proto */
1257 #if CYTHON_FAST_THREAD_STATE
1258 #define __Pyx_ErrRestoreWithState(type, value, tb) __Pyx_ErrRestoreInState(PyThreadState_GET(), type, value, tb)
1259 #define __Pyx_ErrFetchWithState(type, value, tb) __Pyx_ErrFetchInState(PyThreadState_GET(), type, value, tb)
1260 #define __Pyx_ErrRestore(type, value, tb) __Pyx_ErrRestoreInState(__pyx_tstate, type, value, tb)
1261 #define __Pyx_ErrFetch(type, value, tb) __Pyx_ErrFetchInState(__pyx_tstate, type, value, tb)
1262 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1263 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1264 #else
1265 #define __Pyx_ErrRestoreWithState(type, value, tb) PyErr_Restore(type, value, tb)
1266 #define __Pyx_ErrFetchWithState(type, value, tb) PyErr_Fetch(type, value, tb)
1267 #define __Pyx_ErrRestore(type, value, tb) PyErr_Restore(type, value, tb)
1268 #define __Pyx_ErrFetch(type, value, tb) PyErr_Fetch(type, value, tb)
1269 #endif
1270 
1271 /* RaiseException.proto */
1272 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause);
1273 
1274 /* DictGetItem.proto */
1275 #if PY_MAJOR_VERSION >= 3 && !CYTHON_COMPILING_IN_PYPY
1276 static PyObject *__Pyx_PyDict_GetItem(PyObject *d, PyObject* key) {
1277  PyObject *value;
1278  value = PyDict_GetItemWithError(d, key);
1279  if (unlikely(!value)) {
1280  if (!PyErr_Occurred()) {
1281  PyObject* args = PyTuple_Pack(1, key);
1282  if (likely(args))
1283  PyErr_SetObject(PyExc_KeyError, args);
1284  Py_XDECREF(args);
1285  }
1286  return NULL;
1287  }
1288  Py_INCREF(value);
1289  return value;
1290 }
1291 #else
1292  #define __Pyx_PyDict_GetItem(d, key) PyObject_GetItem(d, key)
1293 #endif
1294 
1295 /* SaveResetException.proto */
1296 #if CYTHON_FAST_THREAD_STATE
1297 #define __Pyx_ExceptionSave(type, value, tb) __Pyx__ExceptionSave(__pyx_tstate, type, value, tb)
1298 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1299 #define __Pyx_ExceptionReset(type, value, tb) __Pyx__ExceptionReset(__pyx_tstate, type, value, tb)
1300 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb);
1301 #else
1302 #define __Pyx_ExceptionSave(type, value, tb) PyErr_GetExcInfo(type, value, tb)
1303 #define __Pyx_ExceptionReset(type, value, tb) PyErr_SetExcInfo(type, value, tb)
1304 #endif
1305 
1306 /* PyErrExceptionMatches.proto */
1307 #if CYTHON_FAST_THREAD_STATE
1308 #define __Pyx_PyErr_ExceptionMatches(err) __Pyx_PyErr_ExceptionMatchesInState(__pyx_tstate, err)
1309 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err);
1310 #else
1311 #define __Pyx_PyErr_ExceptionMatches(err) PyErr_ExceptionMatches(err)
1312 #endif
1313 
1314 /* GetException.proto */
1315 #if CYTHON_FAST_THREAD_STATE
1316 #define __Pyx_GetException(type, value, tb) __Pyx__GetException(__pyx_tstate, type, value, tb)
1317 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb);
1318 #else
1319 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb);
1320 #endif
1321 
1322 /* CalculateMetaclass.proto */
1323 static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases);
1324 
1325 /* FetchCommonType.proto */
1326 static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type);
1327 
1328 /* CythonFunction.proto */
1329 #define __Pyx_CyFunction_USED 1
1330 #include <structmember.h>
1331 #define __Pyx_CYFUNCTION_STATICMETHOD 0x01
1332 #define __Pyx_CYFUNCTION_CLASSMETHOD 0x02
1333 #define __Pyx_CYFUNCTION_CCLASS 0x04
1334 #define __Pyx_CyFunction_GetClosure(f)\
1335  (((__pyx_CyFunctionObject *) (f))->func_closure)
1336 #define __Pyx_CyFunction_GetClassObj(f)\
1337  (((__pyx_CyFunctionObject *) (f))->func_classobj)
1338 #define __Pyx_CyFunction_Defaults(type, f)\
1339  ((type *)(((__pyx_CyFunctionObject *) (f))->defaults))
1340 #define __Pyx_CyFunction_SetDefaultsGetter(f, g)\
1341  ((__pyx_CyFunctionObject *) (f))->defaults_getter = (g)
1342 typedef struct {
1343  PyCFunctionObject func;
1344 #if PY_VERSION_HEX < 0x030500A0
1345  PyObject *func_weakreflist;
1346 #endif
1347  PyObject *func_dict;
1348  PyObject *func_name;
1349  PyObject *func_qualname;
1350  PyObject *func_doc;
1351  PyObject *func_globals;
1352  PyObject *func_code;
1353  PyObject *func_closure;
1354  PyObject *func_classobj;
1355  void *defaults;
1356  int defaults_pyobjects;
1357  int flags;
1358  PyObject *defaults_tuple;
1359  PyObject *defaults_kwdict;
1360  PyObject *(*defaults_getter)(PyObject *);
1361  PyObject *func_annotations;
1362 } __pyx_CyFunctionObject;
1363 static PyTypeObject *__pyx_CyFunctionType = 0;
1364 #define __Pyx_CyFunction_NewEx(ml, flags, qualname, self, module, globals, code)\
1365  __Pyx_CyFunction_New(__pyx_CyFunctionType, ml, flags, qualname, self, module, globals, code)
1366 static PyObject *__Pyx_CyFunction_New(PyTypeObject *, PyMethodDef *ml,
1367  int flags, PyObject* qualname,
1368  PyObject *self,
1369  PyObject *module, PyObject *globals,
1370  PyObject* code);
1371 static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *m,
1372  size_t size,
1373  int pyobjects);
1374 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *m,
1375  PyObject *tuple);
1376 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *m,
1377  PyObject *dict);
1378 static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *m,
1379  PyObject *dict);
1380 static int __pyx_CyFunction_init(void);
1381 
1382 /* Py3ClassCreate.proto */
1383 static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name, PyObject *qualname,
1384  PyObject *mkw, PyObject *modname, PyObject *doc);
1385 static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases, PyObject *dict,
1386  PyObject *mkw, int calculate_metaclass, int allow_py2_metaclass);
1387 
1388 /* CodeObjectCache.proto */
1389 typedef struct {
1390  PyCodeObject* code_object;
1391  int code_line;
1392 } __Pyx_CodeObjectCacheEntry;
1393 struct __Pyx_CodeObjectCache {
1394  int count;
1395  int max_count;
1396  __Pyx_CodeObjectCacheEntry* entries;
1397 };
1398 static struct __Pyx_CodeObjectCache __pyx_code_cache = {0,0,NULL};
1399 static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line);
1400 static PyCodeObject *__pyx_find_code_object(int code_line);
1401 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object);
1402 
1403 /* AddTraceback.proto */
1404 static void __Pyx_AddTraceback(const char *funcname, int c_line,
1405  int py_line, const char *filename);
1406 
1407 /* CIntToPy.proto */
1408 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value);
1409 
1410 /* RealImag.proto */
1411 #if CYTHON_CCOMPLEX
1412  #ifdef __cplusplus
1413  #define __Pyx_CREAL(z) ((z).real())
1414  #define __Pyx_CIMAG(z) ((z).imag())
1415  #else
1416  #define __Pyx_CREAL(z) (__real__(z))
1417  #define __Pyx_CIMAG(z) (__imag__(z))
1418  #endif
1419 #else
1420  #define __Pyx_CREAL(z) ((z).real)
1421  #define __Pyx_CIMAG(z) ((z).imag)
1422 #endif
1423 #if defined(__cplusplus) && CYTHON_CCOMPLEX\
1424  && (defined(_WIN32) || defined(__clang__) || (defined(__GNUC__) && (__GNUC__ >= 5 || __GNUC__ == 4 && __GNUC_MINOR__ >= 4 )) || __cplusplus >= 201103)
1425  #define __Pyx_SET_CREAL(z,x) ((z).real(x))
1426  #define __Pyx_SET_CIMAG(z,y) ((z).imag(y))
1427 #else
1428  #define __Pyx_SET_CREAL(z,x) __Pyx_CREAL(z) = (x)
1429  #define __Pyx_SET_CIMAG(z,y) __Pyx_CIMAG(z) = (y)
1430 #endif
1431 
1432 /* Arithmetic.proto */
1433 #if CYTHON_CCOMPLEX
1434  #define __Pyx_c_eq_float(a, b) ((a)==(b))
1435  #define __Pyx_c_sum_float(a, b) ((a)+(b))
1436  #define __Pyx_c_diff_float(a, b) ((a)-(b))
1437  #define __Pyx_c_prod_float(a, b) ((a)*(b))
1438  #define __Pyx_c_quot_float(a, b) ((a)/(b))
1439  #define __Pyx_c_neg_float(a) (-(a))
1440  #ifdef __cplusplus
1441  #define __Pyx_c_is_zero_float(z) ((z)==(float)0)
1442  #define __Pyx_c_conj_float(z) (::std::conj(z))
1443  #if 1
1444  #define __Pyx_c_abs_float(z) (::std::abs(z))
1445  #define __Pyx_c_pow_float(a, b) (::std::pow(a, b))
1446  #endif
1447  #else
1448  #define __Pyx_c_is_zero_float(z) ((z)==0)
1449  #define __Pyx_c_conj_float(z) (conjf(z))
1450  #if 1
1451  #define __Pyx_c_abs_float(z) (cabsf(z))
1452  #define __Pyx_c_pow_float(a, b) (cpowf(a, b))
1453  #endif
1454  #endif
1455 #else
1456  static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex, __pyx_t_float_complex);
1457  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex, __pyx_t_float_complex);
1458  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex, __pyx_t_float_complex);
1459  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex, __pyx_t_float_complex);
1460  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex, __pyx_t_float_complex);
1461  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex);
1462  static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex);
1463  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex);
1464  #if 1
1465  static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex);
1466  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex, __pyx_t_float_complex);
1467  #endif
1468 #endif
1469 
1470 /* Arithmetic.proto */
1471 #if CYTHON_CCOMPLEX
1472  #define __Pyx_c_eq_double(a, b) ((a)==(b))
1473  #define __Pyx_c_sum_double(a, b) ((a)+(b))
1474  #define __Pyx_c_diff_double(a, b) ((a)-(b))
1475  #define __Pyx_c_prod_double(a, b) ((a)*(b))
1476  #define __Pyx_c_quot_double(a, b) ((a)/(b))
1477  #define __Pyx_c_neg_double(a) (-(a))
1478  #ifdef __cplusplus
1479  #define __Pyx_c_is_zero_double(z) ((z)==(double)0)
1480  #define __Pyx_c_conj_double(z) (::std::conj(z))
1481  #if 1
1482  #define __Pyx_c_abs_double(z) (::std::abs(z))
1483  #define __Pyx_c_pow_double(a, b) (::std::pow(a, b))
1484  #endif
1485  #else
1486  #define __Pyx_c_is_zero_double(z) ((z)==0)
1487  #define __Pyx_c_conj_double(z) (conj(z))
1488  #if 1
1489  #define __Pyx_c_abs_double(z) (cabs(z))
1490  #define __Pyx_c_pow_double(a, b) (cpow(a, b))
1491  #endif
1492  #endif
1493 #else
1494  static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex, __pyx_t_double_complex);
1495  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex, __pyx_t_double_complex);
1496  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex, __pyx_t_double_complex);
1497  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex, __pyx_t_double_complex);
1498  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex, __pyx_t_double_complex);
1499  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex);
1500  static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex);
1501  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex);
1502  #if 1
1503  static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex);
1504  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex, __pyx_t_double_complex);
1505  #endif
1506 #endif
1507 
1508 /* CIntToPy.proto */
1509 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value);
1510 
1511 /* CIntToPy.proto */
1512 static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value);
1513 
1514 /* CIntFromPy.proto */
1515 static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *);
1516 
1517 /* CIntFromPy.proto */
1518 static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *);
1519 
1520 /* CheckBinaryVersion.proto */
1521 static int __Pyx_check_binary_version(void);
1522 
1523 /* PyIdentifierFromString.proto */
1524 #if !defined(__Pyx_PyIdentifier_FromString)
1525 #if PY_MAJOR_VERSION < 3
1526  #define __Pyx_PyIdentifier_FromString(s) PyString_FromString(s)
1527 #else
1528  #define __Pyx_PyIdentifier_FromString(s) PyUnicode_FromString(s)
1529 #endif
1530 #endif
1531 
1532 /* ModuleImport.proto */
1533 static PyObject *__Pyx_ImportModule(const char *name);
1534 
1535 /* TypeImport.proto */
1536 static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name, size_t size, int strict);
1537 
1538 /* InitStrings.proto */
1539 static int __Pyx_InitStrings(__Pyx_StringTabEntry *t);
1540 
1541 
1542 /* Module declarations from 'cpython.buffer' */
1543 
1544 /* Module declarations from 'libc.string' */
1545 
1546 /* Module declarations from 'libc.stdio' */
1547 
1548 /* Module declarations from '__builtin__' */
1549 
1550 /* Module declarations from 'cpython.type' */
1551 static PyTypeObject *__pyx_ptype_7cpython_4type_type = 0;
1552 
1553 /* Module declarations from 'cpython' */
1554 
1555 /* Module declarations from 'cpython.object' */
1556 
1557 /* Module declarations from 'cpython.ref' */
1558 
1559 /* Module declarations from 'libc.stdlib' */
1560 
1561 /* Module declarations from 'numpy' */
1562 
1563 /* Module declarations from 'numpy' */
1564 static PyTypeObject *__pyx_ptype_5numpy_dtype = 0;
1565 static PyTypeObject *__pyx_ptype_5numpy_flatiter = 0;
1566 static PyTypeObject *__pyx_ptype_5numpy_broadcast = 0;
1567 static PyTypeObject *__pyx_ptype_5numpy_ndarray = 0;
1568 static PyTypeObject *__pyx_ptype_5numpy_ufunc = 0;
1569 static CYTHON_INLINE char *__pyx_f_5numpy__util_dtypestring(PyArray_Descr *, char *, char *, int *); /*proto*/
1570 
1571 /* Module declarations from 'ADR' */
1572 static PyTypeObject *__pyx_ptype_3ADR_ADR = 0;
1573 #define __Pyx_MODULE_NAME "ADR"
1574 int __pyx_module_is_main_ADR = 0;
1575 
1576 /* Implementation of 'ADR' */
1577 static PyObject *__pyx_builtin_range;
1578 static PyObject *__pyx_builtin_sum;
1579 static PyObject *__pyx_builtin_enumerate;
1580 static PyObject *__pyx_builtin_ValueError;
1581 static PyObject *__pyx_builtin_RuntimeError;
1582 static PyObject *__pyx_builtin_ImportError;
1583 static const char __pyx_k_I[] = "I";
1584 static const char __pyx_k_a[] = "a";
1585 static const char __pyx_k_c[] = "c";
1586 static const char __pyx_k_d[] = "d";
1587 static const char __pyx_k_g[] = "g";
1588 static const char __pyx_k_i[] = "i";
1589 static const char __pyx_k_k[] = "k";
1590 static const char __pyx_k_m[] = "m";
1591 static const char __pyx_k_n[] = "n";
1592 static const char __pyx_k_q[] = "q";
1593 static const char __pyx_k_r[] = "r";
1594 static const char __pyx_k_t[] = "t";
1595 static const char __pyx_k_u[] = "u";
1596 static const char __pyx_k_x[] = "x";
1597 static const char __pyx_k_ci[] = "ci";
1598 static const char __pyx_k_cj[] = "cj";
1599 static const char __pyx_k_ck[] = "ck";
1600 static const char __pyx_k_cq[] = "cq";
1601 static const char __pyx_k_dc[] = "dc";
1602 static const char __pyx_k_df[] = "df";
1603 static const char __pyx_k_nI[] = "nI";
1604 static const char __pyx_k_nc[] = "nc";
1605 static const char __pyx_k_nd[] = "nd";
1606 static const char __pyx_k_sd[] = "sd";
1607 static const char __pyx_k_ua[] = "ua";
1608 static const char __pyx_k_vt[] = "vt";
1609 static const char __pyx_k_ADR[] = "ADR";
1610 static const char __pyx_k_adr[] = "adr";
1611 static const char __pyx_k_cfl[] = "cfl";
1612 static const char __pyx_k_dim[] = "dim";
1613 static const char __pyx_k_doc[] = "__doc__";
1614 static const char __pyx_k_dof[] = "dof";
1615 static const char __pyx_k_ebN[] = "ebN";
1616 static const char __pyx_k_ebq[] = "ebq";
1617 static const char __pyx_k_get[] = "get";
1618 static const char __pyx_k_l2g[] = "l2g";
1619 static const char __pyx_k_lag[] = "lag";
1620 static const char __pyx_k_log[] = "log";
1621 static const char __pyx_k_max[] = "max";
1622 static const char __pyx_k_pdb[] = "pdb";
1623 static const char __pyx_k_phi[] = "phi";
1624 static const char __pyx_k_psi[] = "psi";
1625 static const char __pyx_k_q_a[] = "q_a";
1626 static const char __pyx_k_q_r[] = "q_r";
1627 static const char __pyx_k_q_v[] = "q_v";
1628 static const char __pyx_k_row[] = "row";
1629 static const char __pyx_k_sum[] = "sum";
1630 static const char __pyx_k_u_j[] = "u_j";
1631 static const char __pyx_k_Comm[] = "Comm";
1632 static const char __pyx_k_Hess[] = "Hess";
1633 static const char __pyx_k_aOfX[] = "aOfX";
1634 static const char __pyx_k_cebq[] = "cebq";
1635 static const char __pyx_k_comm[] = "comm";
1636 static const char __pyx_k_copy[] = "copy";
1637 static const char __pyx_k_data[] = "data";
1638 static const char __pyx_k_dphi[] = "dphi";
1639 static const char __pyx_k_ebNE[] = "ebNE";
1640 static const char __pyx_k_ebqe[] = "ebqe";
1641 static const char __pyx_k_fOfX[] = "fOfX";
1642 static const char __pyx_k_fabs[] = "fabs";
1643 static const char __pyx_k_fill[] = "fill";
1644 static const char __pyx_k_flag[] = "flag";
1645 static const char __pyx_k_flat[] = "flat";
1646 static const char __pyx_k_init[] = "__init__";
1647 static const char __pyx_k_keys[] = "keys";
1648 static const char __pyx_k_main[] = "__main__";
1649 static const char __pyx_k_mass[] = "mass";
1650 static const char __pyx_k_math[] = "math";
1651 static const char __pyx_k_mesh[] = "mesh";
1652 static const char __pyx_k_name[] = "name";
1653 static const char __pyx_k_self[] = "self";
1654 static const char __pyx_k_size[] = "size";
1655 static const char __pyx_k_stab[] = "stab";
1656 static const char __pyx_k_step[] = "step";
1657 static const char __pyx_k_stop[] = "stop";
1658 static const char __pyx_k_test[] = "__test__";
1659 static const char __pyx_k_array[] = "array";
1660 static const char __pyx_k_cebqe[] = "cebqe";
1661 static const char __pyx_k_class[] = "__class__";
1662 static const char __pyx_k_dtype[] = "dtype";
1663 static const char __pyx_k_level[] = "level";
1664 static const char __pyx_k_numpy[] = "numpy";
1665 static const char __pyx_k_phi_k[] = "phi_k";
1666 static const char __pyx_k_range[] = "range";
1667 static const char __pyx_k_shape[] = "shape";
1668 static const char __pyx_k_start[] = "start";
1669 static const char __pyx_k_uDict[] = "uDict";
1670 static const char __pyx_k_u_dof[] = "u_dof";
1671 static const char __pyx_k_u_l2g[] = "u_l2g";
1672 static const char __pyx_k_zeros[] = "zeros";
1673 static const char __pyx_k_CT_sge[] = "CT_sge";
1674 static const char __pyx_k_append[] = "append";
1675 static const char __pyx_k_arange[] = "arange";
1676 static const char __pyx_k_dS_ref[] = "dS_ref";
1677 static const char __pyx_k_dV_ref[] = "dV_ref";
1678 static const char __pyx_k_dofMap[] = "dofMap";
1679 static const char __pyx_k_ebqe_a[] = "ebqe_a";
1680 static const char __pyx_k_ebqe_v[] = "ebqe_v";
1681 static const char __pyx_k_grad_u[] = "grad(u)";
1682 static const char __pyx_k_import[] = "__import__";
1683 static const char __pyx_k_l2proj[] = "l2proj";
1684 static const char __pyx_k_linear[] = "linear";
1685 static const char __pyx_k_lowmem[] = "lowmem";
1686 static const char __pyx_k_memory[] = "memory";
1687 static const char __pyx_k_module[] = "__module__";
1688 static const char __pyx_k_nCalls[] = "nCalls";
1689 static const char __pyx_k_nSteps[] = "nSteps";
1690 static const char __pyx_k_name_2[] = "__name__";
1691 static const char __pyx_k_offset[] = "offset";
1692 static const char __pyx_k_phi_ip[] = "phi_ip";
1693 static const char __pyx_k_sdInfo[] = "sdInfo";
1694 static const char __pyx_k_stride[] = "stride";
1695 static const char __pyx_k_values[] = "values";
1696 static const char __pyx_k_TC_base[] = "TC_base";
1697 static const char __pyx_k_default[] = "default";
1698 static const char __pyx_k_has_key[] = "has_key";
1699 static const char __pyx_k_matType[] = "matType";
1700 static const char __pyx_k_numDiff[] = "numDiff";
1701 static const char __pyx_k_options[] = "options";
1702 static const char __pyx_k_outFlow[] = "outFlow";
1703 static const char __pyx_k_penalty[] = "penalty";
1704 static const char __pyx_k_phiDict[] = "phiDict";
1705 static const char __pyx_k_prepare[] = "__prepare__";
1706 static const char __pyx_k_proteus[] = "proteus";
1707 static const char __pyx_k_sc_beta[] = "sc_beta";
1708 static const char __pyx_k_sc_uref[] = "sc_uref";
1709 static const char __pyx_k_setFlow[] = "setFlow";
1710 static const char __pyx_k_Archiver[] = "Archiver";
1711 static const char __pyx_k_Jacobian[] = "Jacobian ";
1712 static const char __pyx_k_SGE_base[] = "SGE_base";
1713 static const char __pyx_k_constant[] = "constant";
1714 static const char __pyx_k_evaluate[] = "evaluate";
1715 static const char __pyx_k_femSpace[] = "femSpace";
1716 static const char __pyx_k_grad_psi[] = "grad_psi";
1717 static const char __pyx_k_jacobian[] = "jacobian";
1718 static const char __pyx_k_logEvent[] = "logEvent";
1719 static const char __pyx_k_mesh_dof[] = "mesh_dof";
1720 static const char __pyx_k_mesh_l2g[] = "mesh_l2g";
1721 static const char __pyx_k_nSpaceIn[] = "nSpaceIn";
1722 static const char __pyx_k_offset_u[] = "offset_u";
1723 static const char __pyx_k_qualname[] = "__qualname__";
1724 static const char __pyx_k_reaction[] = "reaction";
1725 static const char __pyx_k_sc_alpha[] = "sc_alpha";
1726 static const char __pyx_k_stride_u[] = "stride_u";
1727 static const char __pyx_k_timeTerm[] = "timeTerm";
1728 static const char __pyx_k_velocity[] = "velocity";
1729 static const char __pyx_k_Transport[] = "Transport";
1730 static const char __pyx_k_advection[] = "advection";
1731 static const char __pyx_k_diffusion[] = "diffusion";
1732 static const char __pyx_k_eN_global[] = "eN_global";
1733 static const char __pyx_k_enumerate[] = "enumerate";
1734 static const char __pyx_k_fbcObject[] = "fbcObject";
1735 static const char __pyx_k_getValues[] = "getValues";
1736 static const char __pyx_k_globalMax[] = "globalMax";
1737 static const char __pyx_k_globalSum[] = "globalSum";
1738 static const char __pyx_k_iteritems[] = "iteritems";
1739 static const char __pyx_k_metaclass[] = "__metaclass__";
1740 static const char __pyx_k_mixedFlow[] = "mixedFlow";
1741 static const char __pyx_k_nodeArray[] = "nodeArray";
1742 static const char __pyx_k_nonlinear[] = "nonlinear";
1743 static const char __pyx_k_potential[] = "potential";
1744 static const char __pyx_k_psi_trace[] = "psi_trace";
1745 static const char __pyx_k_testSpace[] = "testSpace";
1746 static const char __pyx_k_LevelModel[] = "LevelModel";
1747 static const char __pyx_k_Quadrature[] = "Quadrature";
1748 static const char __pyx_k_ValueError[] = "ValueError";
1749 static const char __pyx_k_XdmfWriter[] = "XdmfWriter";
1750 static const char __pyx_k_buildUnion[] = "buildUnion";
1751 static const char __pyx_k_components[] = "components";
1752 static const char __pyx_k_ebq_global[] = "ebq_global";
1753 static const char __pyx_k_inflowFlux[] = "inflowFlux";
1754 static const char __pyx_k_normal_ref[] = "normal_ref";
1755 static const char __pyx_k_tLast_mesh[] = "tLast_mesh";
1756 static const char __pyx_k_u_test_ref[] = "u_test_ref";
1757 static const char __pyx_k_useMetrics[] = "useMetrics";
1758 static const char __pyx_k_ImportError[] = "ImportError";
1759 static const char __pyx_k_cebq_global[] = "cebq_global";
1760 static const char __pyx_k_defaultName[] = "defaultName";
1761 static const char __pyx_k_ebN_element[] = "ebN_element";
1762 static const char __pyx_k_elementMaps[] = "elementMaps";
1763 static const char __pyx_k_estimate_mt[] = "estimate_mt";
1764 static const char __pyx_k_getJacobian[] = "getJacobian";
1765 static const char __pyx_k_getResidual[] = "getResidual";
1766 static const char __pyx_k_hamiltonian[] = "hamiltonian";
1767 static const char __pyx_k_massLumping[] = "massLumping";
1768 static const char __pyx_k_q_numDiff_u[] = "q_numDiff_u";
1769 static const char __pyx_k_setUnknowns[] = "setUnknowns";
1770 static const char __pyx_k_testIsTrial[] = "testIsTrial";
1771 static const char __pyx_k_u_trial_ref[] = "u_trial_ref";
1772 static const char __pyx_k_Coefficients[] = "Coefficients";
1773 static const char __pyx_k_RuntimeError[] = "RuntimeError";
1774 static const char __pyx_k_SubgridError[] = "SubgridError";
1775 static const char __pyx_k_coefficients[] = "coefficients";
1776 static const char __pyx_k_ebqe_penalty[] = "ebqe_penalty";
1777 static const char __pyx_k_movingDomain[] = "movingDomain";
1778 static const char __pyx_k_numDiff_last[] = "numDiff_last";
1779 static const char __pyx_k_MOVING_DOMAIN[] = "MOVING_DOMAIN";
1780 static const char __pyx_k_NumericalFlux[] = "NumericalFlux";
1781 static const char __pyx_k_adjoint_sigma[] = "adjoint_sigma";
1782 static const char __pyx_k_cfemIntegrals[] = "cfemIntegrals";
1783 static const char __pyx_k_csrRowIndeces[] = "csrRowIndeces";
1784 static const char __pyx_k_diffusionDict[] = "diffusionDict";
1785 static const char __pyx_k_ebqe_bc_u_ext[] = "ebqe_bc_u_ext";
1786 static const char __pyx_k_internalNodes[] = "internalNodes";
1787 static const char __pyx_k_isDOFBoundary[] = "isDOFBoundary";
1788 static const char __pyx_k_nNodes_global[] = "nNodes_global";
1789 static const char __pyx_k_nSpace_global[] = "nSpace_global";
1790 static const char __pyx_k_nStepsToDelay[] = "nStepsToDelay";
1791 static const char __pyx_k_nVDOF_element[] = "nVDOF_element";
1792 static const char __pyx_k_numericalFlux[] = "numericalFlux";
1793 static const char __pyx_k_penalty_power[] = "penalty_power";
1794 static const char __pyx_k_stabilization[] = "stabilization";
1795 static const char __pyx_k_stride_offset[] = "stride+offset";
1796 static const char __pyx_k_testSpaceDict[] = "testSpaceDict";
1797 static const char __pyx_k_variableNames[] = "variableNames";
1798 static const char __pyx_k_CompKernelFlag[] = "CompKernelFlag";
1799 static const char __pyx_k_ShockCapturing[] = "ShockCapturing";
1800 static const char __pyx_k_compKernelFlag[] = "compKernelFlag";
1801 static const char __pyx_k_elemQuadIsDict[] = "elemQuadIsDict";
1802 static const char __pyx_k_globalJacobian[] = "globalJacobian";
1803 static const char __pyx_k_globalResidual[] = "globalResidual";
1804 static const char __pyx_k_grad_psi_trace[] = "grad_psi_trace";
1805 static const char __pyx_k_initializeMesh[] = "initializeMesh";
1806 static const char __pyx_k_mesh_trial_ref[] = "mesh_trial_ref";
1807 static const char __pyx_k_nNodes_element[] = "nNodes_element";
1808 static const char __pyx_k_setFromOptions[] = "setFromOptions";
1809 static const char __pyx_k_shockCapturing[] = "shockCapturing";
1810 static const char __pyx_k_Global_residual[] = "Global residual";
1811 static const char __pyx_k_TimeIntegration[] = "TimeIntegration";
1812 static const char __pyx_k_boundaryJac_ref[] = "boundaryJac_ref";
1813 static const char __pyx_k_boundaryNormals[] = "boundaryNormals";
1814 static const char __pyx_k_elementDiameter[] = "elementDiameter";
1815 static const char __pyx_k_isDOFBoundary_u[] = "isDOFBoundary_u";
1816 static const char __pyx_k_nElements_owned[] = "nElements_owned";
1817 static const char __pyx_k_nFreeDOF_global[] = "nFreeDOF_global";
1818 static const char __pyx_k_nNodes_internal[] = "nNodes_internal";
1819 static const char __pyx_k_phiTrialIsTrial[] = "phiTrialIsTrial";
1820 static const char __pyx_k_reactionLumping[] = "reactionLumping";
1821 static const char __pyx_k_timeIntegration[] = "timeIntegration";
1822 static const char __pyx_k_u_grad_test_ref[] = "u_grad_test_ref";
1823 static const char __pyx_k_advectiveFlux_bc[] = "advectiveFlux_bc";
1824 static const char __pyx_k_conservativeFlux[] = "conservativeFlux";
1825 static const char __pyx_k_csrColumnOffsets[] = "csrColumnOffsets";
1826 static const char __pyx_k_diffusiveFlux_bc[] = "diffusiveFlux_bc";
1827 static const char __pyx_k_inflowBoundaryBC[] = "inflowBoundaryBC";
1828 static const char __pyx_k_isFluxBoundary_u[] = "isFluxBoundary_u";
1829 static const char __pyx_k_max_nDOF_element[] = "max_nDOF_element";
1830 static const char __pyx_k_nElements_global[] = "nElements_global";
1831 static const char __pyx_k_nFreeVDOF_global[] = "nFreeVDOF_global";
1832 static const char __pyx_k_n_phi_ip_element[] = "n_phi_ip_element";
1833 static const char __pyx_k_penalty_constant[] = "penalty_constant";
1834 static const char __pyx_k_proteus_FemTools[] = "proteus.FemTools";
1835 static const char __pyx_k_q_numDiff_u_last[] = "q_numDiff_u_last";
1836 static const char __pyx_k_u_grad_trial_ref[] = "u_grad_trial_ref";
1837 static const char __pyx_k_u_test_trace_ref[] = "u_test_trace_ref";
1838 static const char __pyx_k_zeroJacobian_CSR[] = "zeroJacobian_CSR";
1839 static const char __pyx_k_L2projectEvaluate[] = "L2projectEvaluate";
1840 static const char __pyx_k_LevelModel___init[] = "LevelModel.__init__";
1841 static const char __pyx_k_NonlinearEquation[] = "NonlinearEquation";
1842 static const char __pyx_k_OneLevelTransport[] = "OneLevelTransport";
1843 static const char __pyx_k_VOF_max_numDiff_e[] = "VOF: max numDiff %e";
1844 static const char __pyx_k_boundaryJacobians[] = "boundaryJacobians";
1845 static const char __pyx_k_calculateJacobian[] = "calculateJacobian";
1846 static const char __pyx_k_calculateResidual[] = "calculateResidual";
1847 static const char __pyx_k_csrRowIndeces_u_u[] = "csrRowIndeces_u_u";
1848 static const char __pyx_k_elementNodesArray[] = "elementNodesArray";
1849 static const char __pyx_k_elementQuadrature[] = "elementQuadrature";
1850 static const char __pyx_k_getBasisValuesRef[] = "getBasisValuesRef";
1851 static const char __pyx_k_nDOF_test_element[] = "nDOF_test_element";
1852 static const char __pyx_k_nQuadraturePoints[] = "nQuadraturePoints";
1853 static const char __pyx_k_nodeVelocityArray[] = "nodeVelocityArray";
1854 static const char __pyx_k_numericalFluxType[] = "numericalFluxType";
1855 static const char __pyx_k_proteus_Profiling[] = "proteus.Profiling";
1856 static const char __pyx_k_proteus_Transport[] = "proteus.Transport";
1857 static const char __pyx_k_sdInfo_u_u_colind[] = "sdInfo_u_u_colind";
1858 static const char __pyx_k_sdInfo_u_u_rowptr[] = "sdInfo_u_u_rowptr";
1859 static const char __pyx_k_setupFieldStrides[] = "setupFieldStrides";
1860 static const char __pyx_k_u_trial_trace_ref[] = "u_trial_trace_ref";
1861 static const char __pyx_k_NumericalFlux_IIPG[] = "NumericalFlux_IIPG";
1862 static const char __pyx_k_NumericalFlux_NIPG[] = "NumericalFlux_NIPG";
1863 static const char __pyx_k_NumericalFlux_SIPG[] = "NumericalFlux_SIPG";
1864 static const char __pyx_k_ebqe_bc_flux_u_ext[] = "ebqe_bc_flux_u_ext";
1865 static const char __pyx_k_internalNodesArray[] = "internalNodesArray";
1866 static const char __pyx_k_lag_shockCapturing[] = "lag_shockCapturing";
1867 static const char __pyx_k_localFunctionSpace[] = "localFunctionSpace";
1868 static const char __pyx_k_nDOF_trial_element[] = "nDOF_trial_element";
1869 static const char __pyx_k_setDirichletValues[] = "setDirichletValues";
1870 static const char __pyx_k_updateLocal2Global[] = "updateLocal2Global";
1871 static const char __pyx_k_useSparseDiffusion[] = "useSparseDiffusion";
1872 static const char __pyx_k_Coefficients___init[] = "Coefficients.__init__";
1873 static const char __pyx_k_PostProcessingTools[] = "PostProcessingTools";
1874 static const char __pyx_k_ShockCapturing_base[] = "ShockCapturing_base";
1875 static const char __pyx_k_SubgridError___init[] = "SubgridError.__init__";
1876 static const char __pyx_k_calculateQuadrature[] = "calculateQuadrature";
1877 static const char __pyx_k_csrColumnOffsets_eb[] = "csrColumnOffsets_eb";
1878 static const char __pyx_k_dirichletConditions[] = "dirichletConditions";
1879 static const char __pyx_k_elementIntegralKeys[] = "elementIntegralKeys";
1880 static const char __pyx_k_initializationPhase[] = "initializationPhase";
1881 static const char __pyx_k_mesh_grad_trial_ref[] = "mesh_grad_trial_ref";
1882 static const char __pyx_k_nDOF_test_elementIn[] = "nDOF_test_elementIn";
1883 static const char __pyx_k_nNonzerosInJacobian[] = "nNonzerosInJacobian";
1884 static const char __pyx_k_TimeIntegrationClass[] = "TimeIntegrationClass";
1885 static const char __pyx_k_conservativeFluxDict[] = "conservativeFluxDict";
1886 static const char __pyx_k_csrColumnOffsets_u_u[] = "csrColumnOffsets_u_u";
1887 static const char __pyx_k_dirichletNodeSetList[] = "dirichletNodeSetList";
1888 static const char __pyx_k_forceStrongDirichlet[] = "forceStrongDirichlet";
1889 static const char __pyx_k_getCSRrepresentation[] = "getCSRrepresentation";
1890 static const char __pyx_k_mesh_trial_trace_ref[] = "mesh_trial_trace_ref";
1891 static const char __pyx_k_nDOF_trial_elementIn[] = "nDOF_trial_elementIn";
1892 static const char __pyx_k_proteus_SubgridError[] = "proteus.SubgridError";
1893 static const char __pyx_k_shockCapturingFactor[] = "shockCapturingFactor";
1894 static const char __pyx_k_Coefficients_evaluate[] = "Coefficients.evaluate";
1895 static const char __pyx_k_DOFBoundaryConditions[] = "DOFBoundaryConditions";
1896 static const char __pyx_k_ShockCapturing___init[] = "ShockCapturing.__init__";
1897 static const char __pyx_k_advectiveFlux_bc_flag[] = "advectiveFlux_bc_flag";
1898 static const char __pyx_k_boundaryAdjoint_sigma[] = "boundaryAdjoint_sigma";
1899 static const char __pyx_k_calculateCoefficients[] = "calculateCoefficients";
1900 static const char __pyx_k_calculateSubgridError[] = "calculateSubgridError";
1901 static const char __pyx_k_diffusiveFlux_bc_flag[] = "diffusiveFlux_bc_flag";
1902 static const char __pyx_k_elementDiametersArray[] = "elementDiametersArray";
1903 static const char __pyx_k_elementQuadratureDict[] = "elementQuadratureDict";
1904 static const char __pyx_k_forceStrongConditions[] = "forceStrongConditions";
1905 static const char __pyx_k_massConservationError[] = "massConservationError";
1906 static const char __pyx_k_u_grad_test_trace_ref[] = "u_grad_test_trace_ref";
1907 static const char __pyx_k_velocityPostProcessor[] = "velocityPostProcessor";
1908 static const char __pyx_k_FluxBoundaryConditions[] = "FluxBoundaryConditions";
1909 static const char __pyx_k_LevelModel_estimate_mt[] = "LevelModel.estimate_mt";
1910 static const char __pyx_k_LevelModel_getJacobian[] = "LevelModel.getJacobian";
1911 static const char __pyx_k_LevelModel_getResidual[] = "LevelModel.getResidual";
1912 static const char __pyx_k_fluxBoundaryConditions[] = "fluxBoundaryConditions";
1913 static const char __pyx_k_getBasisValuesTraceRef[] = "getBasisValuesTraceRef";
1914 static const char __pyx_k_nDOF_phi_trial_element[] = "nDOF_phi_trial_element";
1915 static const char __pyx_k_proteus_ShockCapturing[] = "proteus.ShockCapturing";
1916 static const char __pyx_k_proteus_flcbdfWrappers[] = "proteus.flcbdfWrappers";
1917 static const char __pyx_k_referenceFiniteElement[] = "referenceFiniteElement";
1918 static const char __pyx_k_sparseDiffusionTensors[] = "sparseDiffusionTensors";
1919 static const char __pyx_k_u_grad_trial_trace_ref[] = "u_grad_trial_trace_ref";
1920 static const char __pyx_k_velocity_postprocessor[] = "velocity postprocessor";
1921 static const char __pyx_k_Mass_Conservation_Error[] = " Mass Conservation Error";
1922 static const char __pyx_k_csrColumnOffsets_eb_u_u[] = "csrColumnOffsets_eb_u_u";
1923 static const char __pyx_k_elementQuadraturePoints[] = "elementQuadraturePoints";
1924 static const char __pyx_k_inflowBoundaryBC_values[] = "inflowBoundaryBC_values";
1925 static const char __pyx_k_interpolationConditions[] = "interpolationConditions";
1926 static const char __pyx_k_shockCapturingDiffusion[] = "shockCapturingDiffusion";
1927 static const char __pyx_k_timeVaryingCoefficients[] = "timeVaryingCoefficients";
1928 static const char __pyx_k_weakDirichletConditions[] = "weakDirichletConditions";
1929 static const char __pyx_k_SimplexLobattoQuadrature[] = "SimplexLobattoQuadrature";
1930 static const char __pyx_k_elementBoundaryIntegrals[] = "elementBoundaryIntegrals";
1931 static const char __pyx_k_elementQuadratureWeights[] = "elementQuadratureWeights";
1932 static const char __pyx_k_nQuadraturePoints_global[] = "nQuadraturePoints_global";
1933 static const char __pyx_k_proteus_NonlinearSolvers[] = "proteus.NonlinearSolvers";
1934 static const char __pyx_k_stabilizationIsNonlinear[] = "stabilizationIsNonlinear";
1935 static const char __pyx_k_NumericalFlux_IIPG___init[] = "NumericalFlux_IIPG.__init__";
1936 static const char __pyx_k_NumericalFlux_NIPG___init[] = "NumericalFlux_NIPG.__init__";
1937 static const char __pyx_k_NumericalFlux_SIPG___init[] = "NumericalFlux_SIPG.__init__";
1938 static const char __pyx_k_dofBoundaryConditionsDict[] = "dofBoundaryConditionsDict";
1939 static const char __pyx_k_elementBoundaryQuadrature[] = "elementBoundaryQuadrature";
1940 static const char __pyx_k_getBasisGradientValuesRef[] = "getBasisGradientValuesRef";
1941 static const char __pyx_k_initializeTimeIntegration[] = "initializeTimeIntegration";
1942 static const char __pyx_k_isAdvectiveFluxBoundary_u[] = "isAdvectiveFluxBoundary_u";
1943 static const char __pyx_k_mesh_grad_trial_trace_ref[] = "mesh_grad_trial_trace_ref";
1944 static const char __pyx_k_nDOF_mesh_trial_elementIn[] = "nDOF_mesh_trial_elementIn";
1945 static const char __pyx_k_nElementBoundaries_global[] = "nElementBoundaries_global";
1946 static const char __pyx_k_nQuadraturePoints_element[] = "nQuadraturePoints_element";
1947 static const char __pyx_k_updateSubgridErrorHistory[] = "updateSubgridErrorHistory";
1948 static const char __pyx_k_usesGradientStabilization[] = "usesGradientStabilization";
1949 static const char __pyx_k_calculateElementQuadrature[] = "calculateElementQuadrature";
1950 static const char __pyx_k_elementInnerDiametersArray[] = "elementInnerDiametersArray";
1951 static const char __pyx_k_fluxBoundaryConditionsDict[] = "fluxBoundaryConditionsDict";
1952 static const char __pyx_k_nElementBoundaries_element[] = "nElementBoundaries_element";
1953 static const char __pyx_k_useWeakDirichletConditions[] = "useWeakDirichletConditions";
1954 static const char __pyx_k_dirichletConditionsForceDOF[] = "dirichletConditionsForceDOF";
1955 static const char __pyx_k_ebqe_bc_advectiveFlux_u_ext[] = "ebqe_bc_advectiveFlux_u_ext";
1956 static const char __pyx_k_elementBoundaryIntegralKeys[] = "elementBoundaryIntegralKeys";
1957 static const char __pyx_k_initializeElementQuadrature[] = "initializeElementQuadrature";
1958 static const char __pyx_k_nQuadraturePoints_elementIn[] = "nQuadraturePoints_elementIn";
1959 static const char __pyx_k_ndarray_is_not_C_contiguous[] = "ndarray is not C contiguous";
1960 static const char __pyx_k_periodicDirichletConditions[] = "periodicDirichletConditions";
1961 static const char __pyx_k_reuse_test_trial_quadrature[] = "reuse_test_trial_quadrature";
1962 static const char __pyx_k_updateShockCapturingHistory[] = "updateShockCapturingHistory";
1963 static const char __pyx_k_elementBoundaryElementsArray[] = "elementBoundaryElementsArray";
1964 static const char __pyx_k_elementQuadratureRuleIndeces[] = "elementQuadratureRuleIndeces";
1965 static const char __pyx_k_getValuesGlobalExteriorTrace[] = "getValuesGlobalExteriorTrace";
1966 static const char __pyx_k_integrateInterpolationPoints[] = "integrateInterpolationPoints";
1967 static const char __pyx_k_VelocityPostProcessingChooser[] = "VelocityPostProcessingChooser";
1968 static const char __pyx_k_calculateSolutionAtQuadrature[] = "calculateSolutionAtQuadrature";
1969 static const char __pyx_k_elementBoundaryDiametersArray[] = "elementBoundaryDiametersArray";
1970 static const char __pyx_k_elementBoundaryQuadratureDict[] = "elementBoundaryQuadratureDict";
1971 static const char __pyx_k_proteus_TransportCoefficients[] = "proteus.TransportCoefficients";
1972 static const char __pyx_k_Residual_based_shock_capturing[] = "\n Residual-based shock capturing for ADR equations\n\n .. inheritance-diagram:: ShockCapturing\n :parts: 2\n ";
1973 static const char __pyx_k_SubgridError_approximation_for[] = "\n SubgridError approximation for ADR equations\n\n .. inheritance-diagram:: SubgridError\n :parts: 2\n ";
1974 static const char __pyx_k_elementEffectiveDiametersArray[] = "elementEffectiveDiametersArray";
1975 static const char __pyx_k_exteriorElementBoundariesArray[] = "exteriorElementBoundariesArray";
1976 static const char __pyx_k_getBasisGradientValuesTraceRef[] = "getBasisGradientValuesTraceRef";
1977 static const char __pyx_k_getPointwiseBoundaryConditions[] = "getPointwiseBoundaryConditions";
1978 static const char __pyx_k_nonlinear_function_evaluations[] = "nonlinear_function_evaluations";
1979 static const char __pyx_k_proteus_ctransportCoefficients[] = "proteus.ctransportCoefficients";
1980 static const char __pyx_k_An_optimized_Advection_Diffusio[] = "\nAn optimized Advection-Diffusion-Reaction module\n";
1981 static const char __pyx_k_Coefficients_of_linear_ADR_equa[] = "\n Coefficients of linear ADR equations\n\n .. inheritance-diagram:: Coefficients\n :parts: 2\n ";
1982 static const char __pyx_k_Optimized_LevelModel_for_ADR_eq[] = "\n Optimized LevelModel for ADR equations\n\n .. inheritance-diagram:: LevelModel\n :parts: 2\n ";
1983 static const char __pyx_k_dofBoundaryConditionsSetterDict[] = "dofBoundaryConditionsSetterDict";
1984 static const char __pyx_k_elementBoundaryQuadraturePoints[] = "elementBoundaryQuadraturePoints";
1985 static const char __pyx_k_home_cekees_proteus_proteus_ADR[] = "/home/cekees/proteus/proteus/ADR.pyx";
1986 static const char __pyx_k_numpy_core_multiarray_failed_to[] = "numpy.core.multiarray failed to import";
1987 static const char __pyx_k_reuse_trial_and_test_quadrature[] = "reuse_trial_and_test_quadrature";
1988 static const char __pyx_k_unknown_dtype_code_in_numpy_pxd[] = "unknown dtype code in numpy.pxd (%d)";
1989 static const char __pyx_k_ADR_ShockCapturing_lagging_reque[] = "ADR.ShockCapturing: lagging requested but must lag the first step; switching lagging off and delaying";
1990 static const char __pyx_k_ADR_ShockCapturing_switched_to_l[] = "ADR.ShockCapturing: switched to lagged shock capturing";
1991 static const char __pyx_k_Advection_DiagonalUpwind_Diffusi[] = "Advection_DiagonalUpwind_Diffusion_IIPG_exterior";
1992 static const char __pyx_k_Building_time_integration_object[] = "Building time integration object";
1993 static const char __pyx_k_C0_AffineLinearOnSimplexWithNoda[] = "C0_AffineLinearOnSimplexWithNodalBasis";
1994 static const char __pyx_k_Calculating_numerical_quadrature[] = "Calculating numerical quadrature formulas";
1995 static const char __pyx_k_Coefficients_initializeElementBo[] = "Coefficients.initializeElementBoundaryQuadrature";
1996 static const char __pyx_k_Coefficients_initializeElementQu[] = "Coefficients.initializeElementQuadrature";
1997 static const char __pyx_k_Coefficients_initializeGlobalExt[] = "Coefficients.initializeGlobalExteriorElementBoundaryQuadrature";
1998 static const char __pyx_k_Format_string_allocated_too_shor[] = "Format string allocated too short, see comment in numpy.pxd";
1999 static const char __pyx_k_LevelModel_calculateAuxiliaryQua[] = "LevelModel.calculateAuxiliaryQuantitiesAfterStep";
2000 static const char __pyx_k_LevelModel_calculateCoefficients[] = "LevelModel.calculateCoefficients";
2001 static const char __pyx_k_LevelModel_calculateElementBound[] = "LevelModel.calculateElementBoundaryQuadrature";
2002 static const char __pyx_k_LevelModel_calculateElementQuadr[] = "LevelModel.calculateElementQuadrature";
2003 static const char __pyx_k_LevelModel_calculateExteriorElem[] = "LevelModel.calculateExteriorElementBoundaryQuadrature";
2004 static const char __pyx_k_LevelModel_calculateSolutionAtQu[] = "LevelModel.calculateSolutionAtQuadrature";
2005 static const char __pyx_k_Non_native_byte_order_not_suppor[] = "Non-native byte order not supported";
2006 static const char __pyx_k_ShockCapturing_initializeElement[] = "ShockCapturing.initializeElementQuadrature";
2007 static const char __pyx_k_ShockCapturing_updateShockCaptur[] = "ShockCapturing.updateShockCapturingHistory";
2008 static const char __pyx_k_SubgridError_calculateSubgridErr[] = "SubgridError.calculateSubgridError";
2009 static const char __pyx_k_SubgridError_initializeElementQu[] = "SubgridError.initializeElementQuadrature";
2010 static const char __pyx_k_SubgridError_updateSubgridErrorH[] = "SubgridError.updateSubgridErrorHistory";
2011 static const char __pyx_k_Updating_local_to_global_mapping[] = "Updating local to global mappings";
2012 static const char __pyx_k_You_must_use_a_numerical_flux_to[] = "You must use a numerical flux to apply weak boundary conditions for parallel runs";
2013 static const char __pyx_k_advectiveFluxBoundaryConditionsD[] = "advectiveFluxBoundaryConditionsDict";
2014 static const char __pyx_k_advectiveFluxBoundaryConditionsS[] = "advectiveFluxBoundaryConditionsSetterDict";
2015 static const char __pyx_k_calculateAuxiliaryQuantitiesAfte[] = "calculateAuxiliaryQuantitiesAfterStep";
2016 static const char __pyx_k_calculateElementBoundaryQuadratu[] = "calculateElementBoundaryQuadrature";
2017 static const char __pyx_k_calculateExteriorElementBoundary[] = "calculateExteriorElementBoundaryQuadrature";
2018 static const char __pyx_k_diffusiveFluxBoundaryConditionsD[] = "diffusiveFluxBoundaryConditionsDictDict";
2019 static const char __pyx_k_diffusiveFluxBoundaryConditionsS[] = "diffusiveFluxBoundaryConditionsSetterDictDict";
2020 static const char __pyx_k_elementBoundaryLocalElementBound[] = "elementBoundaryLocalElementBoundariesArray";
2021 static const char __pyx_k_elementBoundaryQuadratureDiction[] = "elementBoundaryQuadratureDictionaryWriter";
2022 static const char __pyx_k_elementBoundaryQuadratureRuleInd[] = "elementBoundaryQuadratureRuleIndeces";
2023 static const char __pyx_k_elementBoundaryQuadratureWeights[] = "elementBoundaryQuadratureWeights";
2024 static const char __pyx_k_elementQuadratureDictionaryWrite[] = "elementQuadratureDictionaryWriter";
2025 static const char __pyx_k_element_and_element_boundary_Jac[] = "element and element boundary Jacobians";
2026 static const char __pyx_k_exteriorElementBoundaryQuadratur[] = "exteriorElementBoundaryQuadratureDictionaryWriter";
2027 static const char __pyx_k_fluxBoundaryConditionsObjectsDic[] = "fluxBoundaryConditionsObjectsDict";
2028 static const char __pyx_k_getAdvectiveFluxBoundaryConditio[] = "getAdvectiveFluxBoundaryConditions";
2029 static const char __pyx_k_getDiffusiveFluxBoundaryConditio[] = "getDiffusiveFluxBoundaryConditions";
2030 static const char __pyx_k_inflowBC_internalNodes_updateLoc[] = "inflowBC, internalNodes,updateLocal2Global";
2031 static const char __pyx_k_initializeElementBoundaryQuadrat[] = "initializeElementBoundaryQuadrature";
2032 static const char __pyx_k_initializeGlobalExteriorElementB[] = "initializeGlobalExteriorElementBoundaryQuadrature";
2033 static const char __pyx_k_nElementBoundaryQuadraturePoints[] = "nElementBoundaryQuadraturePoints_elementBoundary";
2034 static const char __pyx_k_nExteriorElementBoundaries_globa[] = "nExteriorElementBoundaries_global";
2035 static const char __pyx_k_nQuadraturePoints_elementBoundar[] = "nQuadraturePoints_elementBoundaryIn";
2036 static const char __pyx_k_ndarray_is_not_Fortran_contiguou[] = "ndarray is not Fortran contiguous";
2037 static const char __pyx_k_nonlinear_function_jacobian_eval[] = "nonlinear_function_jacobian_evaluations";
2038 static const char __pyx_k_numpy_core_umath_failed_to_impor[] = "numpy.core.umath failed to import";
2039 static const char __pyx_k_points_elementBoundaryQuadrature[] = "points_elementBoundaryQuadrature";
2040 static const char __pyx_k_scalars_elementBoundaryQuadratur[] = "scalars_elementBoundaryQuadrature";
2041 static const char __pyx_k_stressTraceBoundaryConditionsSet[] = "stressTraceBoundaryConditionsSetterDict";
2042 static const char __pyx_k_tensors_elementBoundaryQuadratur[] = "tensors_elementBoundaryQuadrature";
2043 static const char __pyx_k_to_reuse_test_trial_quad_all_fem[] = "to reuse_test_trial_quad all femSpaces must be the same!";
2044 static const char __pyx_k_vectors_elementBoundaryQuadratur[] = "vectors_elementBoundaryQuadrature";
2045 static const char __pyx_k_Advection_DiagonalUpwind_Diffusi_2[] = "Advection_DiagonalUpwind_Diffusion_SIPG_exterior";
2046 static const char __pyx_k_Advection_DiagonalUpwind_Diffusi_3[] = "Advection_DiagonalUpwind_Diffusion_NIPG_exterior";
2047 static const char __pyx_k_Format_string_allocated_too_shor_2[] = "Format string allocated too short.";
2048 static const char __pyx_k_diffusiveFluxBoundaryConditionsD_2[] = "diffusiveFluxBoundaryConditionsDict";
2049 static const char __pyx_k_nElementBoundaryQuadraturePoints_2[] = "nElementBoundaryQuadraturePoints_global";
2050 static PyObject *__pyx_n_s_ADR;
2051 static PyObject *__pyx_kp_s_ADR_ShockCapturing_lagging_reque;
2052 static PyObject *__pyx_kp_s_ADR_ShockCapturing_switched_to_l;
2053 static PyObject *__pyx_n_s_Advection_DiagonalUpwind_Diffusi;
2054 static PyObject *__pyx_n_s_Advection_DiagonalUpwind_Diffusi_2;
2055 static PyObject *__pyx_n_s_Advection_DiagonalUpwind_Diffusi_3;
2056 static PyObject *__pyx_n_s_Archiver;
2057 static PyObject *__pyx_kp_s_Building_time_integration_object;
2058 static PyObject *__pyx_n_s_C0_AffineLinearOnSimplexWithNoda;
2059 static PyObject *__pyx_n_s_CT_sge;
2060 static PyObject *__pyx_kp_s_Calculating_numerical_quadrature;
2061 static PyObject *__pyx_n_s_Coefficients;
2062 static PyObject *__pyx_n_s_Coefficients___init;
2063 static PyObject *__pyx_n_s_Coefficients_evaluate;
2064 static PyObject *__pyx_n_s_Coefficients_initializeElementBo;
2065 static PyObject *__pyx_n_s_Coefficients_initializeElementQu;
2066 static PyObject *__pyx_n_s_Coefficients_initializeGlobalExt;
2067 static PyObject *__pyx_kp_s_Coefficients_of_linear_ADR_equa;
2068 static PyObject *__pyx_n_s_Comm;
2069 static PyObject *__pyx_n_s_CompKernelFlag;
2070 static PyObject *__pyx_n_s_DOFBoundaryConditions;
2071 static PyObject *__pyx_n_s_FluxBoundaryConditions;
2072 static PyObject *__pyx_kp_u_Format_string_allocated_too_shor;
2073 static PyObject *__pyx_kp_u_Format_string_allocated_too_shor_2;
2074 static PyObject *__pyx_kp_s_Global_residual;
2075 static PyObject *__pyx_n_s_Hess;
2076 static PyObject *__pyx_n_s_I;
2077 static PyObject *__pyx_n_s_ImportError;
2078 static PyObject *__pyx_kp_s_Jacobian;
2079 static PyObject *__pyx_n_s_L2projectEvaluate;
2080 static PyObject *__pyx_n_s_LevelModel;
2081 static PyObject *__pyx_n_s_LevelModel___init;
2082 static PyObject *__pyx_n_s_LevelModel_calculateAuxiliaryQua;
2083 static PyObject *__pyx_n_s_LevelModel_calculateCoefficients;
2084 static PyObject *__pyx_n_s_LevelModel_calculateElementBound;
2085 static PyObject *__pyx_n_s_LevelModel_calculateElementQuadr;
2086 static PyObject *__pyx_n_s_LevelModel_calculateExteriorElem;
2087 static PyObject *__pyx_n_s_LevelModel_calculateSolutionAtQu;
2088 static PyObject *__pyx_n_s_LevelModel_estimate_mt;
2089 static PyObject *__pyx_n_s_LevelModel_getJacobian;
2090 static PyObject *__pyx_n_s_LevelModel_getResidual;
2091 static PyObject *__pyx_n_s_MOVING_DOMAIN;
2092 static PyObject *__pyx_kp_s_Mass_Conservation_Error;
2093 static PyObject *__pyx_kp_u_Non_native_byte_order_not_suppor;
2094 static PyObject *__pyx_n_s_NonlinearEquation;
2095 static PyObject *__pyx_n_s_NumericalFlux;
2096 static PyObject *__pyx_n_s_NumericalFlux_IIPG;
2097 static PyObject *__pyx_n_s_NumericalFlux_IIPG___init;
2098 static PyObject *__pyx_n_s_NumericalFlux_NIPG;
2099 static PyObject *__pyx_n_s_NumericalFlux_NIPG___init;
2100 static PyObject *__pyx_n_s_NumericalFlux_SIPG;
2101 static PyObject *__pyx_n_s_NumericalFlux_SIPG___init;
2102 static PyObject *__pyx_n_s_OneLevelTransport;
2103 static PyObject *__pyx_kp_s_Optimized_LevelModel_for_ADR_eq;
2104 static PyObject *__pyx_n_s_PostProcessingTools;
2105 static PyObject *__pyx_n_s_Quadrature;
2106 static PyObject *__pyx_kp_s_Residual_based_shock_capturing;
2107 static PyObject *__pyx_n_s_RuntimeError;
2108 static PyObject *__pyx_n_s_SGE_base;
2109 static PyObject *__pyx_n_s_ShockCapturing;
2110 static PyObject *__pyx_n_s_ShockCapturing___init;
2111 static PyObject *__pyx_n_s_ShockCapturing_base;
2112 static PyObject *__pyx_n_s_ShockCapturing_initializeElement;
2113 static PyObject *__pyx_n_s_ShockCapturing_updateShockCaptur;
2114 static PyObject *__pyx_n_s_SimplexLobattoQuadrature;
2115 static PyObject *__pyx_n_s_SubgridError;
2116 static PyObject *__pyx_n_s_SubgridError___init;
2117 static PyObject *__pyx_kp_s_SubgridError_approximation_for;
2118 static PyObject *__pyx_n_s_SubgridError_calculateSubgridErr;
2119 static PyObject *__pyx_n_s_SubgridError_initializeElementQu;
2120 static PyObject *__pyx_n_s_SubgridError_updateSubgridErrorH;
2121 static PyObject *__pyx_n_s_TC_base;
2122 static PyObject *__pyx_n_s_TimeIntegration;
2123 static PyObject *__pyx_n_s_TimeIntegrationClass;
2124 static PyObject *__pyx_n_s_Transport;
2125 static PyObject *__pyx_kp_s_Updating_local_to_global_mapping;
2126 static PyObject *__pyx_kp_s_VOF_max_numDiff_e;
2127 static PyObject *__pyx_n_s_ValueError;
2128 static PyObject *__pyx_n_s_VelocityPostProcessingChooser;
2129 static PyObject *__pyx_n_s_XdmfWriter;
2130 static PyObject *__pyx_kp_s_You_must_use_a_numerical_flux_to;
2131 static PyObject *__pyx_n_s_a;
2132 static PyObject *__pyx_n_s_aOfX;
2133 static PyObject *__pyx_n_s_adjoint_sigma;
2134 static PyObject *__pyx_n_s_adr;
2135 static PyObject *__pyx_n_s_advection;
2136 static PyObject *__pyx_n_s_advectiveFluxBoundaryConditionsD;
2137 static PyObject *__pyx_n_s_advectiveFluxBoundaryConditionsS;
2138 static PyObject *__pyx_n_s_advectiveFlux_bc;
2139 static PyObject *__pyx_n_s_advectiveFlux_bc_flag;
2140 static PyObject *__pyx_n_s_append;
2141 static PyObject *__pyx_n_s_arange;
2142 static PyObject *__pyx_n_s_array;
2143 static PyObject *__pyx_n_s_boundaryAdjoint_sigma;
2144 static PyObject *__pyx_n_s_boundaryJac_ref;
2145 static PyObject *__pyx_n_s_boundaryJacobians;
2146 static PyObject *__pyx_n_s_boundaryNormals;
2147 static PyObject *__pyx_n_s_buildUnion;
2148 static PyObject *__pyx_n_s_c;
2149 static PyObject *__pyx_n_s_calculateAuxiliaryQuantitiesAfte;
2150 static PyObject *__pyx_n_s_calculateCoefficients;
2151 static PyObject *__pyx_n_s_calculateElementBoundaryQuadratu;
2152 static PyObject *__pyx_n_s_calculateElementQuadrature;
2153 static PyObject *__pyx_n_s_calculateExteriorElementBoundary;
2154 static PyObject *__pyx_n_s_calculateJacobian;
2155 static PyObject *__pyx_n_s_calculateQuadrature;
2156 static PyObject *__pyx_n_s_calculateResidual;
2157 static PyObject *__pyx_n_s_calculateSolutionAtQuadrature;
2158 static PyObject *__pyx_n_s_calculateSubgridError;
2159 static PyObject *__pyx_n_s_cebq;
2160 static PyObject *__pyx_n_s_cebq_global;
2161 static PyObject *__pyx_n_s_cebqe;
2162 static PyObject *__pyx_n_s_cfemIntegrals;
2163 static PyObject *__pyx_n_s_cfl;
2164 static PyObject *__pyx_n_s_ci;
2165 static PyObject *__pyx_n_s_cj;
2166 static PyObject *__pyx_n_s_ck;
2167 static PyObject *__pyx_n_s_class;
2168 static PyObject *__pyx_n_s_coefficients;
2169 static PyObject *__pyx_n_s_comm;
2170 static PyObject *__pyx_n_s_compKernelFlag;
2171 static PyObject *__pyx_n_s_components;
2172 static PyObject *__pyx_n_s_conservativeFlux;
2173 static PyObject *__pyx_n_s_conservativeFluxDict;
2174 static PyObject *__pyx_n_s_constant;
2175 static PyObject *__pyx_n_s_copy;
2176 static PyObject *__pyx_n_s_cq;
2177 static PyObject *__pyx_n_s_csrColumnOffsets;
2178 static PyObject *__pyx_n_s_csrColumnOffsets_eb;
2179 static PyObject *__pyx_n_s_csrColumnOffsets_eb_u_u;
2180 static PyObject *__pyx_n_s_csrColumnOffsets_u_u;
2181 static PyObject *__pyx_n_s_csrRowIndeces;
2182 static PyObject *__pyx_n_s_csrRowIndeces_u_u;
2183 static PyObject *__pyx_n_s_d;
2184 static PyObject *__pyx_n_s_dS_ref;
2185 static PyObject *__pyx_n_s_dV_ref;
2186 static PyObject *__pyx_n_s_data;
2187 static PyObject *__pyx_n_s_dc;
2188 static PyObject *__pyx_n_s_default;
2189 static PyObject *__pyx_n_s_defaultName;
2190 static PyObject *__pyx_n_s_df;
2191 static PyObject *__pyx_n_s_diffusion;
2192 static PyObject *__pyx_n_s_diffusionDict;
2193 static PyObject *__pyx_n_s_diffusiveFluxBoundaryConditionsD;
2194 static PyObject *__pyx_n_s_diffusiveFluxBoundaryConditionsD_2;
2195 static PyObject *__pyx_n_s_diffusiveFluxBoundaryConditionsS;
2196 static PyObject *__pyx_n_s_diffusiveFlux_bc;
2197 static PyObject *__pyx_n_s_diffusiveFlux_bc_flag;
2198 static PyObject *__pyx_n_s_dim;
2199 static PyObject *__pyx_n_s_dirichletConditions;
2200 static PyObject *__pyx_n_s_dirichletConditionsForceDOF;
2201 static PyObject *__pyx_n_s_dirichletNodeSetList;
2202 static PyObject *__pyx_n_s_doc;
2203 static PyObject *__pyx_n_s_dof;
2204 static PyObject *__pyx_n_s_dofBoundaryConditionsDict;
2205 static PyObject *__pyx_n_s_dofBoundaryConditionsSetterDict;
2206 static PyObject *__pyx_n_s_dofMap;
2207 static PyObject *__pyx_n_s_dphi;
2208 static PyObject *__pyx_n_s_dtype;
2209 static PyObject *__pyx_n_s_eN_global;
2210 static PyObject *__pyx_n_s_ebN;
2211 static PyObject *__pyx_n_s_ebNE;
2212 static PyObject *__pyx_n_s_ebN_element;
2213 static PyObject *__pyx_n_s_ebq;
2214 static PyObject *__pyx_n_s_ebq_global;
2215 static PyObject *__pyx_n_s_ebqe;
2216 static PyObject *__pyx_n_s_ebqe_a;
2217 static PyObject *__pyx_n_s_ebqe_bc_advectiveFlux_u_ext;
2218 static PyObject *__pyx_n_s_ebqe_bc_flux_u_ext;
2219 static PyObject *__pyx_n_s_ebqe_bc_u_ext;
2220 static PyObject *__pyx_n_s_ebqe_penalty;
2221 static PyObject *__pyx_n_s_ebqe_v;
2222 static PyObject *__pyx_n_s_elemQuadIsDict;
2223 static PyObject *__pyx_n_s_elementBoundaryDiametersArray;
2224 static PyObject *__pyx_n_s_elementBoundaryElementsArray;
2225 static PyObject *__pyx_n_s_elementBoundaryIntegralKeys;
2226 static PyObject *__pyx_n_s_elementBoundaryIntegrals;
2227 static PyObject *__pyx_n_s_elementBoundaryLocalElementBound;
2228 static PyObject *__pyx_n_s_elementBoundaryQuadrature;
2229 static PyObject *__pyx_n_s_elementBoundaryQuadratureDict;
2230 static PyObject *__pyx_n_s_elementBoundaryQuadratureDiction;
2231 static PyObject *__pyx_n_s_elementBoundaryQuadraturePoints;
2232 static PyObject *__pyx_n_s_elementBoundaryQuadratureRuleInd;
2233 static PyObject *__pyx_n_s_elementBoundaryQuadratureWeights;
2234 static PyObject *__pyx_n_s_elementDiameter;
2235 static PyObject *__pyx_n_s_elementDiametersArray;
2236 static PyObject *__pyx_n_s_elementEffectiveDiametersArray;
2237 static PyObject *__pyx_n_s_elementInnerDiametersArray;
2238 static PyObject *__pyx_n_s_elementIntegralKeys;
2239 static PyObject *__pyx_n_s_elementMaps;
2240 static PyObject *__pyx_n_s_elementNodesArray;
2241 static PyObject *__pyx_n_s_elementQuadrature;
2242 static PyObject *__pyx_n_s_elementQuadratureDict;
2243 static PyObject *__pyx_n_s_elementQuadratureDictionaryWrite;
2244 static PyObject *__pyx_n_s_elementQuadraturePoints;
2245 static PyObject *__pyx_n_s_elementQuadratureRuleIndeces;
2246 static PyObject *__pyx_n_s_elementQuadratureWeights;
2247 static PyObject *__pyx_kp_s_element_and_element_boundary_Jac;
2248 static PyObject *__pyx_n_s_enumerate;
2249 static PyObject *__pyx_n_s_estimate_mt;
2250 static PyObject *__pyx_n_s_evaluate;
2251 static PyObject *__pyx_n_s_exteriorElementBoundariesArray;
2252 static PyObject *__pyx_n_s_exteriorElementBoundaryQuadratur;
2253 static PyObject *__pyx_n_s_fOfX;
2254 static PyObject *__pyx_n_s_fabs;
2255 static PyObject *__pyx_n_s_fbcObject;
2256 static PyObject *__pyx_n_s_femSpace;
2257 static PyObject *__pyx_n_s_fill;
2258 static PyObject *__pyx_n_s_flag;
2259 static PyObject *__pyx_n_s_flat;
2260 static PyObject *__pyx_n_s_fluxBoundaryConditions;
2261 static PyObject *__pyx_n_s_fluxBoundaryConditionsDict;
2262 static PyObject *__pyx_n_s_fluxBoundaryConditionsObjectsDic;
2263 static PyObject *__pyx_n_s_forceStrongConditions;
2264 static PyObject *__pyx_n_s_forceStrongDirichlet;
2265 static PyObject *__pyx_n_s_g;
2266 static PyObject *__pyx_n_s_get;
2267 static PyObject *__pyx_n_s_getAdvectiveFluxBoundaryConditio;
2268 static PyObject *__pyx_n_s_getBasisGradientValuesRef;
2269 static PyObject *__pyx_n_s_getBasisGradientValuesTraceRef;
2270 static PyObject *__pyx_n_s_getBasisValuesRef;
2271 static PyObject *__pyx_n_s_getBasisValuesTraceRef;
2272 static PyObject *__pyx_n_s_getCSRrepresentation;
2273 static PyObject *__pyx_n_s_getDiffusiveFluxBoundaryConditio;
2274 static PyObject *__pyx_n_s_getJacobian;
2275 static PyObject *__pyx_n_s_getPointwiseBoundaryConditions;
2276 static PyObject *__pyx_n_s_getResidual;
2277 static PyObject *__pyx_n_s_getValues;
2278 static PyObject *__pyx_n_s_getValuesGlobalExteriorTrace;
2279 static PyObject *__pyx_n_s_globalJacobian;
2280 static PyObject *__pyx_n_s_globalMax;
2281 static PyObject *__pyx_n_s_globalResidual;
2282 static PyObject *__pyx_n_s_globalSum;
2283 static PyObject *__pyx_n_s_grad_psi;
2284 static PyObject *__pyx_n_s_grad_psi_trace;
2285 static PyObject *__pyx_kp_s_grad_u;
2286 static PyObject *__pyx_n_s_hamiltonian;
2287 static PyObject *__pyx_n_s_has_key;
2288 static PyObject *__pyx_kp_s_home_cekees_proteus_proteus_ADR;
2289 static PyObject *__pyx_n_s_i;
2290 static PyObject *__pyx_n_s_import;
2291 static PyObject *__pyx_kp_s_inflowBC_internalNodes_updateLoc;
2292 static PyObject *__pyx_n_s_inflowBoundaryBC;
2293 static PyObject *__pyx_n_s_inflowBoundaryBC_values;
2294 static PyObject *__pyx_n_s_inflowFlux;
2295 static PyObject *__pyx_n_s_init;
2296 static PyObject *__pyx_n_s_initializationPhase;
2297 static PyObject *__pyx_n_s_initializeElementBoundaryQuadrat;
2298 static PyObject *__pyx_n_s_initializeElementQuadrature;
2299 static PyObject *__pyx_n_s_initializeGlobalExteriorElementB;
2300 static PyObject *__pyx_n_s_initializeMesh;
2301 static PyObject *__pyx_n_s_initializeTimeIntegration;
2302 static PyObject *__pyx_n_s_integrateInterpolationPoints;
2303 static PyObject *__pyx_n_s_internalNodes;
2304 static PyObject *__pyx_n_s_internalNodesArray;
2305 static PyObject *__pyx_n_s_interpolationConditions;
2306 static PyObject *__pyx_n_s_isAdvectiveFluxBoundary_u;
2307 static PyObject *__pyx_n_s_isDOFBoundary;
2308 static PyObject *__pyx_n_s_isDOFBoundary_u;
2309 static PyObject *__pyx_n_s_isFluxBoundary_u;
2310 static PyObject *__pyx_n_s_iteritems;
2311 static PyObject *__pyx_n_s_jacobian;
2312 static PyObject *__pyx_n_s_k;
2313 static PyObject *__pyx_n_s_keys;
2314 static PyObject *__pyx_n_s_l2g;
2315 static PyObject *__pyx_n_s_l2proj;
2316 static PyObject *__pyx_n_s_lag;
2317 static PyObject *__pyx_n_s_lag_shockCapturing;
2318 static PyObject *__pyx_n_s_level;
2319 static PyObject *__pyx_n_s_linear;
2320 static PyObject *__pyx_n_s_localFunctionSpace;
2321 static PyObject *__pyx_n_s_log;
2322 static PyObject *__pyx_n_s_logEvent;
2323 static PyObject *__pyx_n_s_lowmem;
2324 static PyObject *__pyx_n_s_m;
2325 static PyObject *__pyx_n_s_main;
2326 static PyObject *__pyx_n_s_mass;
2327 static PyObject *__pyx_n_s_massConservationError;
2328 static PyObject *__pyx_n_s_massLumping;
2329 static PyObject *__pyx_n_s_matType;
2330 static PyObject *__pyx_n_s_math;
2331 static PyObject *__pyx_n_s_max;
2332 static PyObject *__pyx_n_s_max_nDOF_element;
2333 static PyObject *__pyx_n_s_memory;
2334 static PyObject *__pyx_n_s_mesh;
2335 static PyObject *__pyx_n_s_mesh_dof;
2336 static PyObject *__pyx_n_s_mesh_grad_trial_ref;
2337 static PyObject *__pyx_n_s_mesh_grad_trial_trace_ref;
2338 static PyObject *__pyx_n_s_mesh_l2g;
2339 static PyObject *__pyx_n_s_mesh_trial_ref;
2340 static PyObject *__pyx_n_s_mesh_trial_trace_ref;
2341 static PyObject *__pyx_n_s_metaclass;
2342 static PyObject *__pyx_n_s_mixedFlow;
2343 static PyObject *__pyx_n_s_module;
2344 static PyObject *__pyx_n_s_movingDomain;
2345 static PyObject *__pyx_n_s_n;
2346 static PyObject *__pyx_n_s_nCalls;
2347 static PyObject *__pyx_n_s_nDOF_mesh_trial_elementIn;
2348 static PyObject *__pyx_n_s_nDOF_phi_trial_element;
2349 static PyObject *__pyx_n_s_nDOF_test_element;
2350 static PyObject *__pyx_n_s_nDOF_test_elementIn;
2351 static PyObject *__pyx_n_s_nDOF_trial_element;
2352 static PyObject *__pyx_n_s_nDOF_trial_elementIn;
2353 static PyObject *__pyx_n_s_nElementBoundaries_element;
2354 static PyObject *__pyx_n_s_nElementBoundaries_global;
2355 static PyObject *__pyx_n_s_nElementBoundaryQuadraturePoints;
2356 static PyObject *__pyx_n_s_nElementBoundaryQuadraturePoints_2;
2357 static PyObject *__pyx_n_s_nElements_global;
2358 static PyObject *__pyx_n_s_nElements_owned;
2359 static PyObject *__pyx_n_s_nExteriorElementBoundaries_globa;
2360 static PyObject *__pyx_n_s_nFreeDOF_global;
2361 static PyObject *__pyx_n_s_nFreeVDOF_global;
2362 static PyObject *__pyx_n_s_nI;
2363 static PyObject *__pyx_n_s_nNodes_element;
2364 static PyObject *__pyx_n_s_nNodes_global;
2365 static PyObject *__pyx_n_s_nNodes_internal;
2366 static PyObject *__pyx_n_s_nNonzerosInJacobian;
2367 static PyObject *__pyx_n_s_nQuadraturePoints;
2368 static PyObject *__pyx_n_s_nQuadraturePoints_element;
2369 static PyObject *__pyx_n_s_nQuadraturePoints_elementBoundar;
2370 static PyObject *__pyx_n_s_nQuadraturePoints_elementIn;
2371 static PyObject *__pyx_n_s_nQuadraturePoints_global;
2372 static PyObject *__pyx_n_s_nSpaceIn;
2373 static PyObject *__pyx_n_s_nSpace_global;
2374 static PyObject *__pyx_n_s_nSteps;
2375 static PyObject *__pyx_n_s_nStepsToDelay;
2376 static PyObject *__pyx_n_s_nVDOF_element;
2377 static PyObject *__pyx_n_s_n_phi_ip_element;
2378 static PyObject *__pyx_n_s_name;
2379 static PyObject *__pyx_n_s_name_2;
2380 static PyObject *__pyx_n_s_nc;
2381 static PyObject *__pyx_n_s_nd;
2382 static PyObject *__pyx_kp_u_ndarray_is_not_C_contiguous;
2383 static PyObject *__pyx_kp_u_ndarray_is_not_Fortran_contiguou;
2384 static PyObject *__pyx_n_s_nodeArray;
2385 static PyObject *__pyx_n_s_nodeVelocityArray;
2386 static PyObject *__pyx_n_s_nonlinear;
2387 static PyObject *__pyx_n_s_nonlinear_function_evaluations;
2388 static PyObject *__pyx_n_s_nonlinear_function_jacobian_eval;
2389 static PyObject *__pyx_n_s_normal_ref;
2390 static PyObject *__pyx_n_s_numDiff;
2391 static PyObject *__pyx_n_s_numDiff_last;
2392 static PyObject *__pyx_n_s_numericalFlux;
2393 static PyObject *__pyx_n_s_numericalFluxType;
2394 static PyObject *__pyx_n_s_numpy;
2395 static PyObject *__pyx_kp_s_numpy_core_multiarray_failed_to;
2396 static PyObject *__pyx_kp_s_numpy_core_umath_failed_to_impor;
2397 static PyObject *__pyx_n_s_offset;
2398 static PyObject *__pyx_n_s_offset_u;
2399 static PyObject *__pyx_n_s_options;
2400 static PyObject *__pyx_n_s_outFlow;
2401 static PyObject *__pyx_n_s_pdb;
2402 static PyObject *__pyx_n_s_penalty;
2403 static PyObject *__pyx_n_s_penalty_constant;
2404 static PyObject *__pyx_n_s_penalty_power;
2405 static PyObject *__pyx_n_s_periodicDirichletConditions;
2406 static PyObject *__pyx_n_s_phi;
2407 static PyObject *__pyx_n_s_phiDict;
2408 static PyObject *__pyx_n_s_phiTrialIsTrial;
2409 static PyObject *__pyx_n_s_phi_ip;
2410 static PyObject *__pyx_n_s_phi_k;
2411 static PyObject *__pyx_n_s_points_elementBoundaryQuadrature;
2412 static PyObject *__pyx_n_s_potential;
2413 static PyObject *__pyx_n_s_prepare;
2414 static PyObject *__pyx_n_s_proteus;
2415 static PyObject *__pyx_n_s_proteus_FemTools;
2416 static PyObject *__pyx_n_s_proteus_NonlinearSolvers;
2417 static PyObject *__pyx_n_s_proteus_Profiling;
2418 static PyObject *__pyx_n_s_proteus_ShockCapturing;
2419 static PyObject *__pyx_n_s_proteus_SubgridError;
2420 static PyObject *__pyx_n_s_proteus_Transport;
2421 static PyObject *__pyx_n_s_proteus_TransportCoefficients;
2422 static PyObject *__pyx_n_s_proteus_ctransportCoefficients;
2423 static PyObject *__pyx_n_s_proteus_flcbdfWrappers;
2424 static PyObject *__pyx_n_s_psi;
2425 static PyObject *__pyx_n_s_psi_trace;
2426 static PyObject *__pyx_n_s_q;
2427 static PyObject *__pyx_n_s_q_a;
2428 static PyObject *__pyx_n_s_q_numDiff_u;
2429 static PyObject *__pyx_n_s_q_numDiff_u_last;
2430 static PyObject *__pyx_n_s_q_r;
2431 static PyObject *__pyx_n_s_q_v;
2432 static PyObject *__pyx_n_s_qualname;
2433 static PyObject *__pyx_n_s_r;
2434 static PyObject *__pyx_n_s_range;
2435 static PyObject *__pyx_n_s_reaction;
2436 static PyObject *__pyx_n_s_reactionLumping;
2437 static PyObject *__pyx_n_s_referenceFiniteElement;
2438 static PyObject *__pyx_n_s_reuse_test_trial_quadrature;
2439 static PyObject *__pyx_n_s_reuse_trial_and_test_quadrature;
2440 static PyObject *__pyx_n_s_row;
2441 static PyObject *__pyx_n_s_sc_alpha;
2442 static PyObject *__pyx_n_s_sc_beta;
2443 static PyObject *__pyx_n_s_sc_uref;
2444 static PyObject *__pyx_n_s_scalars_elementBoundaryQuadratur;
2445 static PyObject *__pyx_n_s_sd;
2446 static PyObject *__pyx_n_s_sdInfo;
2447 static PyObject *__pyx_n_s_sdInfo_u_u_colind;
2448 static PyObject *__pyx_n_s_sdInfo_u_u_rowptr;
2449 static PyObject *__pyx_n_s_self;
2450 static PyObject *__pyx_n_s_setDirichletValues;
2451 static PyObject *__pyx_n_s_setFlow;
2452 static PyObject *__pyx_n_s_setFromOptions;
2453 static PyObject *__pyx_n_s_setUnknowns;
2454 static PyObject *__pyx_n_s_setupFieldStrides;
2455 static PyObject *__pyx_n_s_shape;
2456 static PyObject *__pyx_n_s_shockCapturing;
2457 static PyObject *__pyx_n_s_shockCapturingDiffusion;
2458 static PyObject *__pyx_n_s_shockCapturingFactor;
2459 static PyObject *__pyx_n_s_size;
2460 static PyObject *__pyx_n_s_sparseDiffusionTensors;
2461 static PyObject *__pyx_n_s_stab;
2462 static PyObject *__pyx_n_s_stabilization;
2463 static PyObject *__pyx_n_s_stabilizationIsNonlinear;
2464 static PyObject *__pyx_n_s_start;
2465 static PyObject *__pyx_n_s_step;
2466 static PyObject *__pyx_n_s_stop;
2467 static PyObject *__pyx_n_s_stressTraceBoundaryConditionsSet;
2468 static PyObject *__pyx_n_s_stride;
2469 static PyObject *__pyx_kp_s_stride_offset;
2470 static PyObject *__pyx_n_s_stride_u;
2471 static PyObject *__pyx_n_s_sum;
2472 static PyObject *__pyx_n_s_t;
2473 static PyObject *__pyx_n_s_tLast_mesh;
2474 static PyObject *__pyx_n_s_tensors_elementBoundaryQuadratur;
2475 static PyObject *__pyx_n_s_test;
2476 static PyObject *__pyx_n_s_testIsTrial;
2477 static PyObject *__pyx_n_s_testSpace;
2478 static PyObject *__pyx_n_s_testSpaceDict;
2479 static PyObject *__pyx_n_s_timeIntegration;
2480 static PyObject *__pyx_n_s_timeTerm;
2481 static PyObject *__pyx_n_s_timeVaryingCoefficients;
2482 static PyObject *__pyx_kp_s_to_reuse_test_trial_quad_all_fem;
2483 static PyObject *__pyx_n_s_u;
2484 static PyObject *__pyx_n_s_uDict;
2485 static PyObject *__pyx_n_s_u_dof;
2486 static PyObject *__pyx_n_s_u_grad_test_ref;
2487 static PyObject *__pyx_n_s_u_grad_test_trace_ref;
2488 static PyObject *__pyx_n_s_u_grad_trial_ref;
2489 static PyObject *__pyx_n_s_u_grad_trial_trace_ref;
2490 static PyObject *__pyx_n_s_u_j;
2491 static PyObject *__pyx_n_s_u_l2g;
2492 static PyObject *__pyx_n_s_u_test_ref;
2493 static PyObject *__pyx_n_s_u_test_trace_ref;
2494 static PyObject *__pyx_n_s_u_trial_ref;
2495 static PyObject *__pyx_n_s_u_trial_trace_ref;
2496 static PyObject *__pyx_n_s_ua;
2497 static PyObject *__pyx_kp_u_unknown_dtype_code_in_numpy_pxd;
2498 static PyObject *__pyx_n_s_updateLocal2Global;
2499 static PyObject *__pyx_n_s_updateShockCapturingHistory;
2500 static PyObject *__pyx_n_s_updateSubgridErrorHistory;
2501 static PyObject *__pyx_n_s_useMetrics;
2502 static PyObject *__pyx_n_s_useSparseDiffusion;
2503 static PyObject *__pyx_n_s_useWeakDirichletConditions;
2504 static PyObject *__pyx_n_s_usesGradientStabilization;
2505 static PyObject *__pyx_n_s_values;
2506 static PyObject *__pyx_n_s_variableNames;
2507 static PyObject *__pyx_n_s_vectors_elementBoundaryQuadratur;
2508 static PyObject *__pyx_n_s_velocity;
2509 static PyObject *__pyx_n_s_velocityPostProcessor;
2510 static PyObject *__pyx_kp_s_velocity_postprocessor;
2511 static PyObject *__pyx_n_s_vt;
2512 static PyObject *__pyx_n_s_weakDirichletConditions;
2513 static PyObject *__pyx_n_s_x;
2514 static PyObject *__pyx_n_s_zeroJacobian_CSR;
2515 static PyObject *__pyx_n_s_zeros;
2516 static int __pyx_pf_3ADR_3ADR___cinit__(struct __pyx_obj_3ADR_ADR *__pyx_v_self, int __pyx_v_nSpaceIn, int __pyx_v_nQuadraturePoints_elementIn, int __pyx_v_nDOF_mesh_trial_elementIn, int __pyx_v_nDOF_trial_elementIn, int __pyx_v_nDOF_test_elementIn, int __pyx_v_nQuadraturePoints_elementBoundaryIn, int __pyx_v_CompKernelFlag); /* proto */
2517 static void __pyx_pf_3ADR_3ADR_2__dealloc__(struct __pyx_obj_3ADR_ADR *__pyx_v_self); /* proto */
2518 static PyObject *__pyx_pf_3ADR_3ADR_4calculateResidual(struct __pyx_obj_3ADR_ADR *__pyx_v_self, PyArrayObject *__pyx_v_mesh_trial_ref, PyArrayObject *__pyx_v_mesh_grad_trial_ref, PyArrayObject *__pyx_v_mesh_dof, PyArrayObject *__pyx_v_mesh_l2g, PyArrayObject *__pyx_v_dV_ref, PyArrayObject *__pyx_v_u_trial_ref, PyArrayObject *__pyx_v_u_grad_trial_ref, PyArrayObject *__pyx_v_u_test_ref, PyArrayObject *__pyx_v_u_grad_test_ref, PyArrayObject *__pyx_v_elementDiameter, PyArrayObject *__pyx_v_cfl, double __pyx_v_CT_sge, double __pyx_v_sc_uref, double __pyx_v_sc_alpha, double __pyx_v_useMetrics, PyArrayObject *__pyx_v_mesh_trial_trace_ref, PyArrayObject *__pyx_v_mesh_grad_trial_trace_ref, PyArrayObject *__pyx_v_dS_ref, PyArrayObject *__pyx_v_u_trial_trace_ref, PyArrayObject *__pyx_v_u_grad_trial_trace_ref, PyArrayObject *__pyx_v_u_test_trace_ref, PyArrayObject *__pyx_v_u_grad_test_trace_ref, PyArrayObject *__pyx_v_normal_ref, PyArrayObject *__pyx_v_boundaryJac_ref, int __pyx_v_nElements_global, PyArrayObject *__pyx_v_u_l2g, PyArrayObject *__pyx_v_u_dof, PyArrayObject *__pyx_v_sdInfo_u_u_rowptr, PyArrayObject *__pyx_v_sdInfo_u_u_colind, PyArrayObject *__pyx_v_q_a, PyArrayObject *__pyx_v_q_v, PyArrayObject *__pyx_v_q_r, int __pyx_v_lag_shockCapturing, double __pyx_v_shockCapturingDiffusion, PyArrayObject *__pyx_v_q_numDiff_u, PyArrayObject *__pyx_v_q_numDiff_u_last, int __pyx_v_offset_u, int __pyx_v_stride_u, PyArrayObject *__pyx_v_globalResidual, int __pyx_v_nExteriorElementBoundaries_global, PyArrayObject *__pyx_v_exteriorElementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementBoundaryLocalElementBoundariesArray, PyArrayObject *__pyx_v_ebqe_a, PyArrayObject *__pyx_v_ebqe_v, PyArrayObject *__pyx_v_isDOFBoundary_u, PyArrayObject *__pyx_v_ebqe_bc_u_ext, PyArrayObject *__pyx_v_isFluxBoundary_u, PyArrayObject *__pyx_v_isAdvectiveFluxBoundary_u, PyArrayObject *__pyx_v_ebqe_bc_flux_u_ext, PyArrayObject *__pyx_v_ebqe_bc_advectiveFlux_u_ext, PyArrayObject *__pyx_v_ebqe_penalty, double __pyx_v_adjoint_sigma); /* proto */
2519 static PyObject *__pyx_pf_3ADR_3ADR_6calculateJacobian(struct __pyx_obj_3ADR_ADR *__pyx_v_self, PyArrayObject *__pyx_v_mesh_trial_ref, PyArrayObject *__pyx_v_mesh_grad_trial_ref, PyArrayObject *__pyx_v_mesh_dof, PyArrayObject *__pyx_v_mesh_l2g, PyArrayObject *__pyx_v_dV_ref, PyArrayObject *__pyx_v_u_trial_ref, PyArrayObject *__pyx_v_u_grad_trial_ref, PyArrayObject *__pyx_v_u_test_ref, PyArrayObject *__pyx_v_u_grad_test_ref, PyArrayObject *__pyx_v_elementDiameter, PyArrayObject *__pyx_v_cfl, double __pyx_v_CT_sge, double __pyx_v_sc_uref, double __pyx_v_sc_alpha, double __pyx_v_useMetrics, PyArrayObject *__pyx_v_mesh_trial_trace_ref, PyArrayObject *__pyx_v_mesh_grad_trial_trace_ref, PyArrayObject *__pyx_v_dS_ref, PyArrayObject *__pyx_v_u_trial_trace_ref, PyArrayObject *__pyx_v_u_grad_trial_trace_ref, PyArrayObject *__pyx_v_u_test_trace_ref, PyArrayObject *__pyx_v_u_grad_test_trace_ref, PyArrayObject *__pyx_v_normal_ref, PyArrayObject *__pyx_v_boundaryJac_ref, int __pyx_v_nElements_global, PyArrayObject *__pyx_v_u_l2g, PyArrayObject *__pyx_v_u_dof, PyArrayObject *__pyx_v_sdInfo_u_u_rowptr, PyArrayObject *__pyx_v_sdInfo_u_u_colind, PyArrayObject *__pyx_v_q_a, PyArrayObject *__pyx_v_q_v, PyArrayObject *__pyx_v_q_r, int __pyx_v_lag_shockCapturing, double __pyx_v_shockCapturingDiffusion, PyArrayObject *__pyx_v_q_numDiff_u, PyArrayObject *__pyx_v_q_numDiff_u_last, PyArrayObject *__pyx_v_csrRowIndeces_u_u, PyArrayObject *__pyx_v_csrColumnOffsets_u_u, PyObject *__pyx_v_globalJacobian, int __pyx_v_nExteriorElementBoundaries_global, PyArrayObject *__pyx_v_exteriorElementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementBoundaryLocalElementBoundariesArray, PyArrayObject *__pyx_v_ebqe_a, PyArrayObject *__pyx_v_ebqe_v, PyArrayObject *__pyx_v_isDOFBoundary_u, PyArrayObject *__pyx_v_ebqe_bc_u_ext, PyArrayObject *__pyx_v_isFluxBoundary_u, PyArrayObject *__pyx_v_isAdvectiveFluxBoundary_u, PyArrayObject *__pyx_v_ebqe_bc_flux_u_ext, PyArrayObject *__pyx_v_ebqe_bc_advectiveFlux_u_ext, PyArrayObject *__pyx_v_csrColumnOffsets_eb_u_u, PyArrayObject *__pyx_v_ebqe_penalty, double __pyx_v_adjoint_sigma); /* proto */
2520 static PyObject *__pyx_pf_3ADR_12SubgridError___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_coefficients, PyObject *__pyx_v_nd); /* proto */
2521 static PyObject *__pyx_pf_3ADR_12SubgridError_2initializeElementQuadrature(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_mesh, CYTHON_UNUSED PyObject *__pyx_v_t, CYTHON_UNUSED PyObject *__pyx_v_cq); /* proto */
2522 static PyObject *__pyx_pf_3ADR_12SubgridError_4updateSubgridErrorHistory(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_initializationPhase); /* proto */
2523 static PyObject *__pyx_pf_3ADR_12SubgridError_6calculateSubgridError(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_q); /* proto */
2524 static PyObject *__pyx_pf_3ADR_14ShockCapturing___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_coefficients, PyObject *__pyx_v_nd, PyObject *__pyx_v_shockCapturingFactor, PyObject *__pyx_v_lag, PyObject *__pyx_v_nStepsToDelay); /* proto */
2525 static PyObject *__pyx_pf_3ADR_14ShockCapturing_2initializeElementQuadrature(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_mesh, CYTHON_UNUSED PyObject *__pyx_v_t, PyObject *__pyx_v_cq); /* proto */
2526 static PyObject *__pyx_pf_3ADR_14ShockCapturing_4updateShockCapturingHistory(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
2527 static PyObject *__pyx_pf_3ADR_18NumericalFlux_IIPG___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_vt, PyObject *__pyx_v_getPointwiseBoundaryConditions, PyObject *__pyx_v_getAdvectiveFluxBoundaryConditions, PyObject *__pyx_v_getDiffusiveFluxBoundaryConditions); /* proto */
2528 static PyObject *__pyx_pf_3ADR_18NumericalFlux_SIPG___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_vt, PyObject *__pyx_v_getPointwiseBoundaryConditions, PyObject *__pyx_v_getAdvectiveFluxBoundaryConditions, PyObject *__pyx_v_getDiffusiveFluxBoundaryConditions); /* proto */
2529 static PyObject *__pyx_pf_3ADR_18NumericalFlux_NIPG___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_vt, PyObject *__pyx_v_getPointwiseBoundaryConditions, PyObject *__pyx_v_getAdvectiveFluxBoundaryConditions, PyObject *__pyx_v_getDiffusiveFluxBoundaryConditions); /* proto */
2530 static PyObject *__pyx_pf_3ADR_12Coefficients___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_aOfX, PyObject *__pyx_v_fOfX, PyObject *__pyx_v_velocity, PyObject *__pyx_v_nc, PyObject *__pyx_v_nd, PyObject *__pyx_v_l2proj, PyObject *__pyx_v_timeVaryingCoefficients, PyObject *__pyx_v_forceStrongDirichlet, PyObject *__pyx_v_useMetrics, PyObject *__pyx_v_sc_uref, PyObject *__pyx_v_sc_beta); /* proto */
2531 static PyObject *__pyx_pf_3ADR_12Coefficients_2initializeElementQuadrature(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_t, PyObject *__pyx_v_cq); /* proto */
2532 static PyObject *__pyx_pf_3ADR_12Coefficients_4initializeElementBoundaryQuadrature(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_t, PyObject *__pyx_v_cebq, PyObject *__pyx_v_cebq_global); /* proto */
2533 static PyObject *__pyx_pf_3ADR_12Coefficients_6initializeGlobalExteriorElementBoundaryQuadrature(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_t, PyObject *__pyx_v_cebqe); /* proto */
2534 static PyObject *__pyx_pf_3ADR_12Coefficients_8evaluate(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, CYTHON_UNUSED PyObject *__pyx_v_t, PyObject *__pyx_v_c); /* proto */
2535 static PyObject *__pyx_pf_3ADR_10LevelModel___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_uDict, PyObject *__pyx_v_phiDict, PyObject *__pyx_v_testSpaceDict, PyObject *__pyx_v_matType, PyObject *__pyx_v_dofBoundaryConditionsDict, PyObject *__pyx_v_dofBoundaryConditionsSetterDict, PyObject *__pyx_v_coefficients, PyObject *__pyx_v_elementQuadrature, PyObject *__pyx_v_elementBoundaryQuadrature, PyObject *__pyx_v_fluxBoundaryConditionsDict, PyObject *__pyx_v_advectiveFluxBoundaryConditionsSetterDict, PyObject *__pyx_v_diffusiveFluxBoundaryConditionsSetterDictDict, CYTHON_UNUSED PyObject *__pyx_v_stressTraceBoundaryConditionsSetterDict, PyObject *__pyx_v_stabilization, PyObject *__pyx_v_shockCapturing, PyObject *__pyx_v_conservativeFluxDict, PyObject *__pyx_v_numericalFluxType, PyObject *__pyx_v_TimeIntegrationClass, PyObject *__pyx_v_massLumping, PyObject *__pyx_v_reactionLumping, PyObject *__pyx_v_options, PyObject *__pyx_v_name, PyObject *__pyx_v_reuse_trial_and_test_quadrature, PyObject *__pyx_v_sd, PyObject *__pyx_v_movingDomain); /* proto */
2536 static PyObject *__pyx_pf_3ADR_10LevelModel_2calculateCoefficients(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self); /* proto */
2537 static PyObject *__pyx_pf_3ADR_10LevelModel_4getResidual(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_u, PyObject *__pyx_v_r); /* proto */
2538 static PyObject *__pyx_pf_3ADR_10LevelModel_6getJacobian(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_jacobian); /* proto */
2539 static PyObject *__pyx_pf_3ADR_10LevelModel_8calculateElementQuadrature(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
2540 static PyObject *__pyx_pf_3ADR_10LevelModel_10calculateElementBoundaryQuadrature(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self); /* proto */
2541 static PyObject *__pyx_pf_3ADR_10LevelModel_12calculateExteriorElementBoundaryQuadrature(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self); /* proto */
2542 static PyObject *__pyx_pf_3ADR_10LevelModel_14estimate_mt(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self); /* proto */
2543 static PyObject *__pyx_pf_3ADR_10LevelModel_16calculateAuxiliaryQuantitiesAfterStep(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self); /* proto */
2544 static PyObject *__pyx_pf_3ADR_10LevelModel_18calculateSolutionAtQuadrature(CYTHON_UNUSED PyObject *__pyx_self, CYTHON_UNUSED PyObject *__pyx_v_self); /* proto */
2545 static int __pyx_pf_5numpy_7ndarray___getbuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info, int __pyx_v_flags); /* proto */
2546 static void __pyx_pf_5numpy_7ndarray_2__releasebuffer__(PyArrayObject *__pyx_v_self, Py_buffer *__pyx_v_info); /* proto */
2547 static PyObject *__pyx_tp_new_3ADR_ADR(PyTypeObject *t, PyObject *a, PyObject *k); /*proto*/
2548 static PyObject *__pyx_float_0_0;
2549 static PyObject *__pyx_float_1_0;
2550 static PyObject *__pyx_float_0_25;
2551 static PyObject *__pyx_int_0;
2552 static PyObject *__pyx_int_1;
2553 static PyObject *__pyx_int_2;
2554 static PyObject *__pyx_int_3;
2555 static PyObject *__pyx_int_4;
2556 static PyObject *__pyx_int_5;
2557 static PyObject *__pyx_int_6;
2558 static PyObject *__pyx_int_9;
2559 static PyObject *__pyx_int_10;
2560 static PyObject *__pyx_tuple_;
2561 static PyObject *__pyx_slice__2;
2562 static PyObject *__pyx_slice__5;
2563 static PyObject *__pyx_slice__7;
2564 static PyObject *__pyx_slice__8;
2565 static PyObject *__pyx_tuple__3;
2566 static PyObject *__pyx_tuple__4;
2567 static PyObject *__pyx_tuple__6;
2568 static PyObject *__pyx_tuple__9;
2569 static PyObject *__pyx_slice__10;
2570 static PyObject *__pyx_slice__11;
2571 static PyObject *__pyx_slice__13;
2572 static PyObject *__pyx_slice__14;
2573 static PyObject *__pyx_slice__16;
2574 static PyObject *__pyx_slice__18;
2575 static PyObject *__pyx_slice__20;
2576 static PyObject *__pyx_slice__22;
2577 static PyObject *__pyx_slice__24;
2578 static PyObject *__pyx_slice__26;
2579 static PyObject *__pyx_tuple__12;
2580 static PyObject *__pyx_tuple__15;
2581 static PyObject *__pyx_tuple__17;
2582 static PyObject *__pyx_tuple__19;
2583 static PyObject *__pyx_tuple__21;
2584 static PyObject *__pyx_tuple__23;
2585 static PyObject *__pyx_tuple__25;
2586 static PyObject *__pyx_tuple__27;
2587 static PyObject *__pyx_tuple__28;
2588 static PyObject *__pyx_tuple__29;
2589 static PyObject *__pyx_tuple__30;
2590 static PyObject *__pyx_tuple__31;
2591 static PyObject *__pyx_tuple__32;
2592 static PyObject *__pyx_tuple__33;
2593 static PyObject *__pyx_tuple__34;
2594 static PyObject *__pyx_tuple__35;
2595 static PyObject *__pyx_tuple__36;
2596 static PyObject *__pyx_tuple__37;
2597 static PyObject *__pyx_tuple__38;
2598 static PyObject *__pyx_tuple__39;
2599 static PyObject *__pyx_tuple__40;
2600 static PyObject *__pyx_tuple__41;
2601 static PyObject *__pyx_tuple__42;
2602 static PyObject *__pyx_tuple__43;
2603 static PyObject *__pyx_tuple__44;
2604 static PyObject *__pyx_tuple__45;
2605 static PyObject *__pyx_tuple__46;
2606 static PyObject *__pyx_tuple__47;
2607 static PyObject *__pyx_tuple__48;
2608 static PyObject *__pyx_tuple__49;
2609 static PyObject *__pyx_tuple__50;
2610 static PyObject *__pyx_tuple__51;
2611 static PyObject *__pyx_tuple__52;
2612 static PyObject *__pyx_tuple__53;
2613 static PyObject *__pyx_tuple__54;
2614 static PyObject *__pyx_tuple__55;
2615 static PyObject *__pyx_tuple__56;
2616 static PyObject *__pyx_tuple__57;
2617 static PyObject *__pyx_tuple__58;
2618 static PyObject *__pyx_tuple__59;
2619 static PyObject *__pyx_tuple__60;
2620 static PyObject *__pyx_tuple__61;
2621 static PyObject *__pyx_tuple__62;
2622 static PyObject *__pyx_tuple__63;
2623 static PyObject *__pyx_tuple__64;
2624 static PyObject *__pyx_tuple__65;
2625 static PyObject *__pyx_tuple__66;
2626 static PyObject *__pyx_tuple__67;
2627 static PyObject *__pyx_tuple__68;
2628 static PyObject *__pyx_tuple__69;
2629 static PyObject *__pyx_tuple__70;
2630 static PyObject *__pyx_tuple__71;
2631 static PyObject *__pyx_tuple__72;
2632 static PyObject *__pyx_tuple__73;
2633 static PyObject *__pyx_tuple__74;
2634 static PyObject *__pyx_tuple__75;
2635 static PyObject *__pyx_tuple__76;
2636 static PyObject *__pyx_tuple__77;
2637 static PyObject *__pyx_tuple__78;
2638 static PyObject *__pyx_tuple__79;
2639 static PyObject *__pyx_tuple__80;
2640 static PyObject *__pyx_tuple__81;
2641 static PyObject *__pyx_tuple__82;
2642 static PyObject *__pyx_tuple__83;
2643 static PyObject *__pyx_tuple__84;
2644 static PyObject *__pyx_tuple__85;
2645 static PyObject *__pyx_tuple__86;
2646 static PyObject *__pyx_tuple__87;
2647 static PyObject *__pyx_tuple__88;
2648 static PyObject *__pyx_tuple__89;
2649 static PyObject *__pyx_tuple__90;
2650 static PyObject *__pyx_tuple__91;
2651 static PyObject *__pyx_tuple__92;
2652 static PyObject *__pyx_tuple__93;
2653 static PyObject *__pyx_tuple__94;
2654 static PyObject *__pyx_tuple__95;
2655 static PyObject *__pyx_tuple__96;
2656 static PyObject *__pyx_tuple__97;
2657 static PyObject *__pyx_tuple__98;
2658 static PyObject *__pyx_tuple__99;
2659 static PyObject *__pyx_tuple__100;
2660 static PyObject *__pyx_tuple__101;
2661 static PyObject *__pyx_tuple__102;
2662 static PyObject *__pyx_tuple__104;
2663 static PyObject *__pyx_tuple__106;
2664 static PyObject *__pyx_tuple__108;
2665 static PyObject *__pyx_tuple__109;
2666 static PyObject *__pyx_tuple__111;
2667 static PyObject *__pyx_tuple__113;
2668 static PyObject *__pyx_tuple__114;
2669 static PyObject *__pyx_tuple__116;
2670 static PyObject *__pyx_tuple__118;
2671 static PyObject *__pyx_tuple__120;
2672 static PyObject *__pyx_tuple__122;
2673 static PyObject *__pyx_tuple__124;
2674 static PyObject *__pyx_tuple__126;
2675 static PyObject *__pyx_tuple__127;
2676 static PyObject *__pyx_tuple__129;
2677 static PyObject *__pyx_tuple__131;
2678 static PyObject *__pyx_tuple__133;
2679 static PyObject *__pyx_tuple__135;
2680 static PyObject *__pyx_tuple__137;
2681 static PyObject *__pyx_tuple__138;
2682 static PyObject *__pyx_tuple__140;
2683 static PyObject *__pyx_tuple__142;
2684 static PyObject *__pyx_tuple__144;
2685 static PyObject *__pyx_tuple__146;
2686 static PyObject *__pyx_tuple__148;
2687 static PyObject *__pyx_tuple__150;
2688 static PyObject *__pyx_tuple__152;
2689 static PyObject *__pyx_tuple__154;
2690 static PyObject *__pyx_codeobj__103;
2691 static PyObject *__pyx_codeobj__105;
2692 static PyObject *__pyx_codeobj__107;
2693 static PyObject *__pyx_codeobj__110;
2694 static PyObject *__pyx_codeobj__112;
2695 static PyObject *__pyx_codeobj__115;
2696 static PyObject *__pyx_codeobj__117;
2697 static PyObject *__pyx_codeobj__119;
2698 static PyObject *__pyx_codeobj__121;
2699 static PyObject *__pyx_codeobj__123;
2700 static PyObject *__pyx_codeobj__125;
2701 static PyObject *__pyx_codeobj__128;
2702 static PyObject *__pyx_codeobj__130;
2703 static PyObject *__pyx_codeobj__132;
2704 static PyObject *__pyx_codeobj__134;
2705 static PyObject *__pyx_codeobj__136;
2706 static PyObject *__pyx_codeobj__139;
2707 static PyObject *__pyx_codeobj__141;
2708 static PyObject *__pyx_codeobj__143;
2709 static PyObject *__pyx_codeobj__145;
2710 static PyObject *__pyx_codeobj__147;
2711 static PyObject *__pyx_codeobj__149;
2712 static PyObject *__pyx_codeobj__151;
2713 static PyObject *__pyx_codeobj__153;
2714 static PyObject *__pyx_codeobj__155;
2715 
2716 /* "ADR.pyx":146
2717  *
2718  * cdef cppADR_base* thisptr
2719  * def __cinit__(self, # <<<<<<<<<<<<<<
2720  * int nSpaceIn,
2721  * int nQuadraturePoints_elementIn,
2722  */
2723 
2724 /* Python wrapper */
2725 static int __pyx_pw_3ADR_3ADR_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
2726 static int __pyx_pw_3ADR_3ADR_1__cinit__(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
2727  int __pyx_v_nSpaceIn;
2728  int __pyx_v_nQuadraturePoints_elementIn;
2729  int __pyx_v_nDOF_mesh_trial_elementIn;
2730  int __pyx_v_nDOF_trial_elementIn;
2731  int __pyx_v_nDOF_test_elementIn;
2732  int __pyx_v_nQuadraturePoints_elementBoundaryIn;
2733  int __pyx_v_CompKernelFlag;
2734  int __pyx_r;
2735  __Pyx_RefNannyDeclarations
2736  __Pyx_RefNannySetupContext("__cinit__ (wrapper)", 0);
2737  {
2738  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_nSpaceIn,&__pyx_n_s_nQuadraturePoints_elementIn,&__pyx_n_s_nDOF_mesh_trial_elementIn,&__pyx_n_s_nDOF_trial_elementIn,&__pyx_n_s_nDOF_test_elementIn,&__pyx_n_s_nQuadraturePoints_elementBoundar,&__pyx_n_s_CompKernelFlag,0};
2739  PyObject* values[7] = {0,0,0,0,0,0,0};
2740  if (unlikely(__pyx_kwds)) {
2741  Py_ssize_t kw_args;
2742  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
2743  switch (pos_args) {
2744  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
2745  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
2746  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
2747  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
2748  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
2749  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
2750  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
2751  case 0: break;
2752  default: goto __pyx_L5_argtuple_error;
2753  }
2754  kw_args = PyDict_Size(__pyx_kwds);
2755  switch (pos_args) {
2756  case 0:
2757  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nSpaceIn)) != 0)) kw_args--;
2758  else goto __pyx_L5_argtuple_error;
2759  case 1:
2760  if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nQuadraturePoints_elementIn)) != 0)) kw_args--;
2761  else {
2762  __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 7, 7, 1); __PYX_ERR(0, 146, __pyx_L3_error)
2763  }
2764  case 2:
2765  if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nDOF_mesh_trial_elementIn)) != 0)) kw_args--;
2766  else {
2767  __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 7, 7, 2); __PYX_ERR(0, 146, __pyx_L3_error)
2768  }
2769  case 3:
2770  if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nDOF_trial_elementIn)) != 0)) kw_args--;
2771  else {
2772  __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 7, 7, 3); __PYX_ERR(0, 146, __pyx_L3_error)
2773  }
2774  case 4:
2775  if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nDOF_test_elementIn)) != 0)) kw_args--;
2776  else {
2777  __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 7, 7, 4); __PYX_ERR(0, 146, __pyx_L3_error)
2778  }
2779  case 5:
2780  if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nQuadraturePoints_elementBoundar)) != 0)) kw_args--;
2781  else {
2782  __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 7, 7, 5); __PYX_ERR(0, 146, __pyx_L3_error)
2783  }
2784  case 6:
2785  if (likely((values[6] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_CompKernelFlag)) != 0)) kw_args--;
2786  else {
2787  __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 7, 7, 6); __PYX_ERR(0, 146, __pyx_L3_error)
2788  }
2789  }
2790  if (unlikely(kw_args > 0)) {
2791  if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__cinit__") < 0)) __PYX_ERR(0, 146, __pyx_L3_error)
2792  }
2793  } else if (PyTuple_GET_SIZE(__pyx_args) != 7) {
2794  goto __pyx_L5_argtuple_error;
2795  } else {
2796  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
2797  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
2798  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
2799  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
2800  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
2801  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
2802  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
2803  }
2804  __pyx_v_nSpaceIn = __Pyx_PyInt_As_int(values[0]); if (unlikely((__pyx_v_nSpaceIn == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 147, __pyx_L3_error)
2805  __pyx_v_nQuadraturePoints_elementIn = __Pyx_PyInt_As_int(values[1]); if (unlikely((__pyx_v_nQuadraturePoints_elementIn == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 148, __pyx_L3_error)
2806  __pyx_v_nDOF_mesh_trial_elementIn = __Pyx_PyInt_As_int(values[2]); if (unlikely((__pyx_v_nDOF_mesh_trial_elementIn == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 149, __pyx_L3_error)
2807  __pyx_v_nDOF_trial_elementIn = __Pyx_PyInt_As_int(values[3]); if (unlikely((__pyx_v_nDOF_trial_elementIn == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 150, __pyx_L3_error)
2808  __pyx_v_nDOF_test_elementIn = __Pyx_PyInt_As_int(values[4]); if (unlikely((__pyx_v_nDOF_test_elementIn == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 151, __pyx_L3_error)
2809  __pyx_v_nQuadraturePoints_elementBoundaryIn = __Pyx_PyInt_As_int(values[5]); if (unlikely((__pyx_v_nQuadraturePoints_elementBoundaryIn == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 152, __pyx_L3_error)
2810  __pyx_v_CompKernelFlag = __Pyx_PyInt_As_int(values[6]); if (unlikely((__pyx_v_CompKernelFlag == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 153, __pyx_L3_error)
2811  }
2812  goto __pyx_L4_argument_unpacking_done;
2813  __pyx_L5_argtuple_error:;
2814  __Pyx_RaiseArgtupleInvalid("__cinit__", 1, 7, 7, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 146, __pyx_L3_error)
2815  __pyx_L3_error:;
2816  __Pyx_AddTraceback("ADR.ADR.__cinit__", __pyx_clineno, __pyx_lineno, __pyx_filename);
2817  __Pyx_RefNannyFinishContext();
2818  return -1;
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2820  __pyx_r = __pyx_pf_3ADR_3ADR___cinit__(((struct __pyx_obj_3ADR_ADR *)__pyx_v_self), __pyx_v_nSpaceIn, __pyx_v_nQuadraturePoints_elementIn, __pyx_v_nDOF_mesh_trial_elementIn, __pyx_v_nDOF_trial_elementIn, __pyx_v_nDOF_test_elementIn, __pyx_v_nQuadraturePoints_elementBoundaryIn, __pyx_v_CompKernelFlag);
2821 
2822  /* function exit code */
2823  __Pyx_RefNannyFinishContext();
2824  return __pyx_r;
2825 }
2826 
2827 static int __pyx_pf_3ADR_3ADR___cinit__(struct __pyx_obj_3ADR_ADR *__pyx_v_self, int __pyx_v_nSpaceIn, int __pyx_v_nQuadraturePoints_elementIn, int __pyx_v_nDOF_mesh_trial_elementIn, int __pyx_v_nDOF_trial_elementIn, int __pyx_v_nDOF_test_elementIn, int __pyx_v_nQuadraturePoints_elementBoundaryIn, int __pyx_v_CompKernelFlag) {
2828  int __pyx_r;
2829  __Pyx_RefNannyDeclarations
2830  __Pyx_RefNannySetupContext("__cinit__", 0);
2831 
2832  /* "ADR.pyx":154
2833  * int nQuadraturePoints_elementBoundaryIn,
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2835  * self.thisptr = newADR(nSpaceIn, # <<<<<<<<<<<<<<
2836  * nQuadraturePoints_elementIn,
2837  * nDOF_mesh_trial_elementIn,
2838  */
2839  __pyx_v_self->thisptr = proteus::newADR(__pyx_v_nSpaceIn, __pyx_v_nQuadraturePoints_elementIn, __pyx_v_nDOF_mesh_trial_elementIn, __pyx_v_nDOF_trial_elementIn, __pyx_v_nDOF_test_elementIn, __pyx_v_nQuadraturePoints_elementBoundaryIn, __pyx_v_CompKernelFlag);
2840 
2841  /* "ADR.pyx":146
2842  *
2843  * cdef cppADR_base* thisptr
2844  * def __cinit__(self, # <<<<<<<<<<<<<<
2845  * int nSpaceIn,
2846  * int nQuadraturePoints_elementIn,
2847  */
2848 
2849  /* function exit code */
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2855 /* "ADR.pyx":161
2856  * nQuadraturePoints_elementBoundaryIn,
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2858  * def __dealloc__(self): # <<<<<<<<<<<<<<
2859  * del self.thisptr
2860  * def calculateResidual(self,
2861  */
2862 
2863 /* Python wrapper */
2864 static void __pyx_pw_3ADR_3ADR_3__dealloc__(PyObject *__pyx_v_self); /*proto*/
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2867  __Pyx_RefNannySetupContext("__dealloc__ (wrapper)", 0);
2868  __pyx_pf_3ADR_3ADR_2__dealloc__(((struct __pyx_obj_3ADR_ADR *)__pyx_v_self));
2869 
2870  /* function exit code */
2871  __Pyx_RefNannyFinishContext();
2872 }
2873 
2874 static void __pyx_pf_3ADR_3ADR_2__dealloc__(struct __pyx_obj_3ADR_ADR *__pyx_v_self) {
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2878  /* "ADR.pyx":162
2879  * CompKernelFlag)
2880  * def __dealloc__(self):
2881  * del self.thisptr # <<<<<<<<<<<<<<
2882  * def calculateResidual(self,
2883  * numpy.ndarray mesh_trial_ref,
2884  */
2885  delete __pyx_v_self->thisptr;
2886 
2887  /* "ADR.pyx":161
2888  * nQuadraturePoints_elementBoundaryIn,
2889  * CompKernelFlag)
2890  * def __dealloc__(self): # <<<<<<<<<<<<<<
2891  * del self.thisptr
2892  * def calculateResidual(self,
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2894 
2895  /* function exit code */
2896  __Pyx_RefNannyFinishContext();
2897 }
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2899 /* "ADR.pyx":163
2900  * def __dealloc__(self):
2901  * del self.thisptr
2902  * def calculateResidual(self, # <<<<<<<<<<<<<<
2903  * numpy.ndarray mesh_trial_ref,
2904  * numpy.ndarray mesh_grad_trial_ref,
2905  */
2906 
2907 /* Python wrapper */
2908 static PyObject *__pyx_pw_3ADR_3ADR_5calculateResidual(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
2909 static PyObject *__pyx_pw_3ADR_3ADR_5calculateResidual(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
2910  PyArrayObject *__pyx_v_mesh_trial_ref = 0;
2911  PyArrayObject *__pyx_v_mesh_grad_trial_ref = 0;
2912  PyArrayObject *__pyx_v_mesh_dof = 0;
2913  PyArrayObject *__pyx_v_mesh_l2g = 0;
2914  PyArrayObject *__pyx_v_dV_ref = 0;
2915  PyArrayObject *__pyx_v_u_trial_ref = 0;
2916  PyArrayObject *__pyx_v_u_grad_trial_ref = 0;
2917  PyArrayObject *__pyx_v_u_test_ref = 0;
2918  PyArrayObject *__pyx_v_u_grad_test_ref = 0;
2919  PyArrayObject *__pyx_v_elementDiameter = 0;
2920  PyArrayObject *__pyx_v_cfl = 0;
2921  double __pyx_v_CT_sge;
2922  double __pyx_v_sc_uref;
2923  double __pyx_v_sc_alpha;
2924  double __pyx_v_useMetrics;
2925  PyArrayObject *__pyx_v_mesh_trial_trace_ref = 0;
2926  PyArrayObject *__pyx_v_mesh_grad_trial_trace_ref = 0;
2927  PyArrayObject *__pyx_v_dS_ref = 0;
2928  PyArrayObject *__pyx_v_u_trial_trace_ref = 0;
2929  PyArrayObject *__pyx_v_u_grad_trial_trace_ref = 0;
2930  PyArrayObject *__pyx_v_u_test_trace_ref = 0;
2931  PyArrayObject *__pyx_v_u_grad_test_trace_ref = 0;
2932  PyArrayObject *__pyx_v_normal_ref = 0;
2933  PyArrayObject *__pyx_v_boundaryJac_ref = 0;
2934  int __pyx_v_nElements_global;
2935  PyArrayObject *__pyx_v_u_l2g = 0;
2936  PyArrayObject *__pyx_v_u_dof = 0;
2937  PyArrayObject *__pyx_v_sdInfo_u_u_rowptr = 0;
2938  PyArrayObject *__pyx_v_sdInfo_u_u_colind = 0;
2939  PyArrayObject *__pyx_v_q_a = 0;
2940  PyArrayObject *__pyx_v_q_v = 0;
2941  PyArrayObject *__pyx_v_q_r = 0;
2942  int __pyx_v_lag_shockCapturing;
2943  double __pyx_v_shockCapturingDiffusion;
2944  PyArrayObject *__pyx_v_q_numDiff_u = 0;
2945  PyArrayObject *__pyx_v_q_numDiff_u_last = 0;
2946  int __pyx_v_offset_u;
2947  int __pyx_v_stride_u;
2948  PyArrayObject *__pyx_v_globalResidual = 0;
2949  int __pyx_v_nExteriorElementBoundaries_global;
2950  PyArrayObject *__pyx_v_exteriorElementBoundariesArray = 0;
2951  PyArrayObject *__pyx_v_elementBoundaryElementsArray = 0;
2952  PyArrayObject *__pyx_v_elementBoundaryLocalElementBoundariesArray = 0;
2953  PyArrayObject *__pyx_v_ebqe_a = 0;
2954  PyArrayObject *__pyx_v_ebqe_v = 0;
2955  PyArrayObject *__pyx_v_isDOFBoundary_u = 0;
2956  PyArrayObject *__pyx_v_ebqe_bc_u_ext = 0;
2957  PyArrayObject *__pyx_v_isFluxBoundary_u = 0;
2958  PyArrayObject *__pyx_v_isAdvectiveFluxBoundary_u = 0;
2959  PyArrayObject *__pyx_v_ebqe_bc_flux_u_ext = 0;
2960  PyArrayObject *__pyx_v_ebqe_bc_advectiveFlux_u_ext = 0;
2961  PyArrayObject *__pyx_v_ebqe_penalty = 0;
2962  double __pyx_v_adjoint_sigma;
2963  PyObject *__pyx_r = 0;
2964  __Pyx_RefNannyDeclarations
2965  __Pyx_RefNannySetupContext("calculateResidual (wrapper)", 0);
2966  {
2967  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_mesh_trial_ref,&__pyx_n_s_mesh_grad_trial_ref,&__pyx_n_s_mesh_dof,&__pyx_n_s_mesh_l2g,&__pyx_n_s_dV_ref,&__pyx_n_s_u_trial_ref,&__pyx_n_s_u_grad_trial_ref,&__pyx_n_s_u_test_ref,&__pyx_n_s_u_grad_test_ref,&__pyx_n_s_elementDiameter,&__pyx_n_s_cfl,&__pyx_n_s_CT_sge,&__pyx_n_s_sc_uref,&__pyx_n_s_sc_alpha,&__pyx_n_s_useMetrics,&__pyx_n_s_mesh_trial_trace_ref,&__pyx_n_s_mesh_grad_trial_trace_ref,&__pyx_n_s_dS_ref,&__pyx_n_s_u_trial_trace_ref,&__pyx_n_s_u_grad_trial_trace_ref,&__pyx_n_s_u_test_trace_ref,&__pyx_n_s_u_grad_test_trace_ref,&__pyx_n_s_normal_ref,&__pyx_n_s_boundaryJac_ref,&__pyx_n_s_nElements_global,&__pyx_n_s_u_l2g,&__pyx_n_s_u_dof,&__pyx_n_s_sdInfo_u_u_rowptr,&__pyx_n_s_sdInfo_u_u_colind,&__pyx_n_s_q_a,&__pyx_n_s_q_v,&__pyx_n_s_q_r,&__pyx_n_s_lag_shockCapturing,&__pyx_n_s_shockCapturingDiffusion,&__pyx_n_s_q_numDiff_u,&__pyx_n_s_q_numDiff_u_last,&__pyx_n_s_offset_u,&__pyx_n_s_stride_u,&__pyx_n_s_globalResidual,&__pyx_n_s_nExteriorElementBoundaries_globa,&__pyx_n_s_exteriorElementBoundariesArray,&__pyx_n_s_elementBoundaryElementsArray,&__pyx_n_s_elementBoundaryLocalElementBound,&__pyx_n_s_ebqe_a,&__pyx_n_s_ebqe_v,&__pyx_n_s_isDOFBoundary_u,&__pyx_n_s_ebqe_bc_u_ext,&__pyx_n_s_isFluxBoundary_u,&__pyx_n_s_isAdvectiveFluxBoundary_u,&__pyx_n_s_ebqe_bc_flux_u_ext,&__pyx_n_s_ebqe_bc_advectiveFlux_u_ext,&__pyx_n_s_ebqe_penalty,&__pyx_n_s_adjoint_sigma,0};
2968  PyObject* values[53] = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
2969  if (unlikely(__pyx_kwds)) {
2970  Py_ssize_t kw_args;
2971  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
2972  switch (pos_args) {
2973  case 53: values[52] = PyTuple_GET_ITEM(__pyx_args, 52);
2974  case 52: values[51] = PyTuple_GET_ITEM(__pyx_args, 51);
2975  case 51: values[50] = PyTuple_GET_ITEM(__pyx_args, 50);
2976  case 50: values[49] = PyTuple_GET_ITEM(__pyx_args, 49);
2977  case 49: values[48] = PyTuple_GET_ITEM(__pyx_args, 48);
2978  case 48: values[47] = PyTuple_GET_ITEM(__pyx_args, 47);
2979  case 47: values[46] = PyTuple_GET_ITEM(__pyx_args, 46);
2980  case 46: values[45] = PyTuple_GET_ITEM(__pyx_args, 45);
2981  case 45: values[44] = PyTuple_GET_ITEM(__pyx_args, 44);
2982  case 44: values[43] = PyTuple_GET_ITEM(__pyx_args, 43);
2983  case 43: values[42] = PyTuple_GET_ITEM(__pyx_args, 42);
2984  case 42: values[41] = PyTuple_GET_ITEM(__pyx_args, 41);
2985  case 41: values[40] = PyTuple_GET_ITEM(__pyx_args, 40);
2986  case 40: values[39] = PyTuple_GET_ITEM(__pyx_args, 39);
2987  case 39: values[38] = PyTuple_GET_ITEM(__pyx_args, 38);
2988  case 38: values[37] = PyTuple_GET_ITEM(__pyx_args, 37);
2989  case 37: values[36] = PyTuple_GET_ITEM(__pyx_args, 36);
2990  case 36: values[35] = PyTuple_GET_ITEM(__pyx_args, 35);
2991  case 35: values[34] = PyTuple_GET_ITEM(__pyx_args, 34);
2992  case 34: values[33] = PyTuple_GET_ITEM(__pyx_args, 33);
2993  case 33: values[32] = PyTuple_GET_ITEM(__pyx_args, 32);
2994  case 32: values[31] = PyTuple_GET_ITEM(__pyx_args, 31);
2995  case 31: values[30] = PyTuple_GET_ITEM(__pyx_args, 30);
2996  case 30: values[29] = PyTuple_GET_ITEM(__pyx_args, 29);
2997  case 29: values[28] = PyTuple_GET_ITEM(__pyx_args, 28);
2998  case 28: values[27] = PyTuple_GET_ITEM(__pyx_args, 27);
2999  case 27: values[26] = PyTuple_GET_ITEM(__pyx_args, 26);
3000  case 26: values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
3001  case 25: values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
3002  case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
3003  case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
3004  case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
3005  case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
3006  case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
3007  case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
3008  case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
3009  case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
3010  case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
3011  case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
3012  case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
3013  case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
3014  case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
3015  case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
3016  case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
3017  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
3018  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
3019  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
3020  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
3021  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
3022  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
3023  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
3024  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
3025  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
3026  case 0: break;
3027  default: goto __pyx_L5_argtuple_error;
3028  }
3029  kw_args = PyDict_Size(__pyx_kwds);
3030  switch (pos_args) {
3031  case 0:
3032  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_trial_ref)) != 0)) kw_args--;
3033  else goto __pyx_L5_argtuple_error;
3034  case 1:
3035  if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_grad_trial_ref)) != 0)) kw_args--;
3036  else {
3037  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 1); __PYX_ERR(0, 163, __pyx_L3_error)
3038  }
3039  case 2:
3040  if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_dof)) != 0)) kw_args--;
3041  else {
3042  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 2); __PYX_ERR(0, 163, __pyx_L3_error)
3043  }
3044  case 3:
3045  if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_l2g)) != 0)) kw_args--;
3046  else {
3047  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 3); __PYX_ERR(0, 163, __pyx_L3_error)
3048  }
3049  case 4:
3050  if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dV_ref)) != 0)) kw_args--;
3051  else {
3052  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 4); __PYX_ERR(0, 163, __pyx_L3_error)
3053  }
3054  case 5:
3055  if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_trial_ref)) != 0)) kw_args--;
3056  else {
3057  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 5); __PYX_ERR(0, 163, __pyx_L3_error)
3058  }
3059  case 6:
3060  if (likely((values[6] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_grad_trial_ref)) != 0)) kw_args--;
3061  else {
3062  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 6); __PYX_ERR(0, 163, __pyx_L3_error)
3063  }
3064  case 7:
3065  if (likely((values[7] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_test_ref)) != 0)) kw_args--;
3066  else {
3067  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 7); __PYX_ERR(0, 163, __pyx_L3_error)
3068  }
3069  case 8:
3070  if (likely((values[8] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_grad_test_ref)) != 0)) kw_args--;
3071  else {
3072  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 8); __PYX_ERR(0, 163, __pyx_L3_error)
3073  }
3074  case 9:
3075  if (likely((values[9] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementDiameter)) != 0)) kw_args--;
3076  else {
3077  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 9); __PYX_ERR(0, 163, __pyx_L3_error)
3078  }
3079  case 10:
3080  if (likely((values[10] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_cfl)) != 0)) kw_args--;
3081  else {
3082  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 10); __PYX_ERR(0, 163, __pyx_L3_error)
3083  }
3084  case 11:
3085  if (likely((values[11] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_CT_sge)) != 0)) kw_args--;
3086  else {
3087  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 11); __PYX_ERR(0, 163, __pyx_L3_error)
3088  }
3089  case 12:
3090  if (likely((values[12] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sc_uref)) != 0)) kw_args--;
3091  else {
3092  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 12); __PYX_ERR(0, 163, __pyx_L3_error)
3093  }
3094  case 13:
3095  if (likely((values[13] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sc_alpha)) != 0)) kw_args--;
3096  else {
3097  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 13); __PYX_ERR(0, 163, __pyx_L3_error)
3098  }
3099  case 14:
3100  if (likely((values[14] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_useMetrics)) != 0)) kw_args--;
3101  else {
3102  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 14); __PYX_ERR(0, 163, __pyx_L3_error)
3103  }
3104  case 15:
3105  if (likely((values[15] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_trial_trace_ref)) != 0)) kw_args--;
3106  else {
3107  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 15); __PYX_ERR(0, 163, __pyx_L3_error)
3108  }
3109  case 16:
3110  if (likely((values[16] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_grad_trial_trace_ref)) != 0)) kw_args--;
3111  else {
3112  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 16); __PYX_ERR(0, 163, __pyx_L3_error)
3113  }
3114  case 17:
3115  if (likely((values[17] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dS_ref)) != 0)) kw_args--;
3116  else {
3117  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 17); __PYX_ERR(0, 163, __pyx_L3_error)
3118  }
3119  case 18:
3120  if (likely((values[18] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_trial_trace_ref)) != 0)) kw_args--;
3121  else {
3122  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 18); __PYX_ERR(0, 163, __pyx_L3_error)
3123  }
3124  case 19:
3125  if (likely((values[19] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_grad_trial_trace_ref)) != 0)) kw_args--;
3126  else {
3127  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 19); __PYX_ERR(0, 163, __pyx_L3_error)
3128  }
3129  case 20:
3130  if (likely((values[20] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_test_trace_ref)) != 0)) kw_args--;
3131  else {
3132  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 20); __PYX_ERR(0, 163, __pyx_L3_error)
3133  }
3134  case 21:
3135  if (likely((values[21] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_grad_test_trace_ref)) != 0)) kw_args--;
3136  else {
3137  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 21); __PYX_ERR(0, 163, __pyx_L3_error)
3138  }
3139  case 22:
3140  if (likely((values[22] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_normal_ref)) != 0)) kw_args--;
3141  else {
3142  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 22); __PYX_ERR(0, 163, __pyx_L3_error)
3143  }
3144  case 23:
3145  if (likely((values[23] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_boundaryJac_ref)) != 0)) kw_args--;
3146  else {
3147  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 23); __PYX_ERR(0, 163, __pyx_L3_error)
3148  }
3149  case 24:
3150  if (likely((values[24] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nElements_global)) != 0)) kw_args--;
3151  else {
3152  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 24); __PYX_ERR(0, 163, __pyx_L3_error)
3153  }
3154  case 25:
3155  if (likely((values[25] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_l2g)) != 0)) kw_args--;
3156  else {
3157  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 25); __PYX_ERR(0, 163, __pyx_L3_error)
3158  }
3159  case 26:
3160  if (likely((values[26] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_dof)) != 0)) kw_args--;
3161  else {
3162  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 26); __PYX_ERR(0, 163, __pyx_L3_error)
3163  }
3164  case 27:
3165  if (likely((values[27] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sdInfo_u_u_rowptr)) != 0)) kw_args--;
3166  else {
3167  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 27); __PYX_ERR(0, 163, __pyx_L3_error)
3168  }
3169  case 28:
3170  if (likely((values[28] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sdInfo_u_u_colind)) != 0)) kw_args--;
3171  else {
3172  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 28); __PYX_ERR(0, 163, __pyx_L3_error)
3173  }
3174  case 29:
3175  if (likely((values[29] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_a)) != 0)) kw_args--;
3176  else {
3177  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 29); __PYX_ERR(0, 163, __pyx_L3_error)
3178  }
3179  case 30:
3180  if (likely((values[30] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_v)) != 0)) kw_args--;
3181  else {
3182  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 30); __PYX_ERR(0, 163, __pyx_L3_error)
3183  }
3184  case 31:
3185  if (likely((values[31] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_r)) != 0)) kw_args--;
3186  else {
3187  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 31); __PYX_ERR(0, 163, __pyx_L3_error)
3188  }
3189  case 32:
3190  if (likely((values[32] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_lag_shockCapturing)) != 0)) kw_args--;
3191  else {
3192  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 32); __PYX_ERR(0, 163, __pyx_L3_error)
3193  }
3194  case 33:
3195  if (likely((values[33] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_shockCapturingDiffusion)) != 0)) kw_args--;
3196  else {
3197  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 33); __PYX_ERR(0, 163, __pyx_L3_error)
3198  }
3199  case 34:
3200  if (likely((values[34] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_numDiff_u)) != 0)) kw_args--;
3201  else {
3202  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 34); __PYX_ERR(0, 163, __pyx_L3_error)
3203  }
3204  case 35:
3205  if (likely((values[35] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_numDiff_u_last)) != 0)) kw_args--;
3206  else {
3207  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 35); __PYX_ERR(0, 163, __pyx_L3_error)
3208  }
3209  case 36:
3210  if (likely((values[36] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_offset_u)) != 0)) kw_args--;
3211  else {
3212  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 36); __PYX_ERR(0, 163, __pyx_L3_error)
3213  }
3214  case 37:
3215  if (likely((values[37] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_stride_u)) != 0)) kw_args--;
3216  else {
3217  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 37); __PYX_ERR(0, 163, __pyx_L3_error)
3218  }
3219  case 38:
3220  if (likely((values[38] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_globalResidual)) != 0)) kw_args--;
3221  else {
3222  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 38); __PYX_ERR(0, 163, __pyx_L3_error)
3223  }
3224  case 39:
3225  if (likely((values[39] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nExteriorElementBoundaries_globa)) != 0)) kw_args--;
3226  else {
3227  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 39); __PYX_ERR(0, 163, __pyx_L3_error)
3228  }
3229  case 40:
3230  if (likely((values[40] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_exteriorElementBoundariesArray)) != 0)) kw_args--;
3231  else {
3232  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 40); __PYX_ERR(0, 163, __pyx_L3_error)
3233  }
3234  case 41:
3235  if (likely((values[41] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBoundaryElementsArray)) != 0)) kw_args--;
3236  else {
3237  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 41); __PYX_ERR(0, 163, __pyx_L3_error)
3238  }
3239  case 42:
3240  if (likely((values[42] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBoundaryLocalElementBound)) != 0)) kw_args--;
3241  else {
3242  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 42); __PYX_ERR(0, 163, __pyx_L3_error)
3243  }
3244  case 43:
3245  if (likely((values[43] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_a)) != 0)) kw_args--;
3246  else {
3247  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 43); __PYX_ERR(0, 163, __pyx_L3_error)
3248  }
3249  case 44:
3250  if (likely((values[44] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_v)) != 0)) kw_args--;
3251  else {
3252  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 44); __PYX_ERR(0, 163, __pyx_L3_error)
3253  }
3254  case 45:
3255  if (likely((values[45] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_isDOFBoundary_u)) != 0)) kw_args--;
3256  else {
3257  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 45); __PYX_ERR(0, 163, __pyx_L3_error)
3258  }
3259  case 46:
3260  if (likely((values[46] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_bc_u_ext)) != 0)) kw_args--;
3261  else {
3262  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 46); __PYX_ERR(0, 163, __pyx_L3_error)
3263  }
3264  case 47:
3265  if (likely((values[47] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_isFluxBoundary_u)) != 0)) kw_args--;
3266  else {
3267  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 47); __PYX_ERR(0, 163, __pyx_L3_error)
3268  }
3269  case 48:
3270  if (likely((values[48] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_isAdvectiveFluxBoundary_u)) != 0)) kw_args--;
3271  else {
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3274  case 49:
3275  if (likely((values[49] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_bc_flux_u_ext)) != 0)) kw_args--;
3276  else {
3277  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 49); __PYX_ERR(0, 163, __pyx_L3_error)
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3279  case 50:
3280  if (likely((values[50] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_bc_advectiveFlux_u_ext)) != 0)) kw_args--;
3281  else {
3282  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 50); __PYX_ERR(0, 163, __pyx_L3_error)
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3284  case 51:
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3286  else {
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3289  case 52:
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3291  else {
3292  __Pyx_RaiseArgtupleInvalid("calculateResidual", 1, 53, 53, 52); __PYX_ERR(0, 163, __pyx_L3_error)
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3295  if (unlikely(kw_args > 0)) {
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3297  }
3298  } else if (PyTuple_GET_SIZE(__pyx_args) != 53) {
3299  goto __pyx_L5_argtuple_error;
3300  } else {
3301  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
3302  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
3303  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
3304  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
3305  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
3306  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
3307  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
3308  values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
3309  values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
3310  values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
3311  values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
3312  values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
3313  values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
3314  values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
3315  values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
3316  values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
3317  values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
3318  values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
3319  values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
3320  values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
3321  values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
3322  values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
3323  values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
3324  values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
3325  values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
3326  values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
3327  values[26] = PyTuple_GET_ITEM(__pyx_args, 26);
3328  values[27] = PyTuple_GET_ITEM(__pyx_args, 27);
3329  values[28] = PyTuple_GET_ITEM(__pyx_args, 28);
3330  values[29] = PyTuple_GET_ITEM(__pyx_args, 29);
3331  values[30] = PyTuple_GET_ITEM(__pyx_args, 30);
3332  values[31] = PyTuple_GET_ITEM(__pyx_args, 31);
3333  values[32] = PyTuple_GET_ITEM(__pyx_args, 32);
3334  values[33] = PyTuple_GET_ITEM(__pyx_args, 33);
3335  values[34] = PyTuple_GET_ITEM(__pyx_args, 34);
3336  values[35] = PyTuple_GET_ITEM(__pyx_args, 35);
3337  values[36] = PyTuple_GET_ITEM(__pyx_args, 36);
3338  values[37] = PyTuple_GET_ITEM(__pyx_args, 37);
3339  values[38] = PyTuple_GET_ITEM(__pyx_args, 38);
3340  values[39] = PyTuple_GET_ITEM(__pyx_args, 39);
3341  values[40] = PyTuple_GET_ITEM(__pyx_args, 40);
3342  values[41] = PyTuple_GET_ITEM(__pyx_args, 41);
3343  values[42] = PyTuple_GET_ITEM(__pyx_args, 42);
3344  values[43] = PyTuple_GET_ITEM(__pyx_args, 43);
3345  values[44] = PyTuple_GET_ITEM(__pyx_args, 44);
3346  values[45] = PyTuple_GET_ITEM(__pyx_args, 45);
3347  values[46] = PyTuple_GET_ITEM(__pyx_args, 46);
3348  values[47] = PyTuple_GET_ITEM(__pyx_args, 47);
3349  values[48] = PyTuple_GET_ITEM(__pyx_args, 48);
3350  values[49] = PyTuple_GET_ITEM(__pyx_args, 49);
3351  values[50] = PyTuple_GET_ITEM(__pyx_args, 50);
3352  values[51] = PyTuple_GET_ITEM(__pyx_args, 51);
3353  values[52] = PyTuple_GET_ITEM(__pyx_args, 52);
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3374  __pyx_v_u_grad_trial_trace_ref = ((PyArrayObject *)values[19]);
3375  __pyx_v_u_test_trace_ref = ((PyArrayObject *)values[20]);
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3377  __pyx_v_normal_ref = ((PyArrayObject *)values[22]);
3378  __pyx_v_boundaryJac_ref = ((PyArrayObject *)values[23]);
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3381  __pyx_v_u_dof = ((PyArrayObject *)values[26]);
3382  __pyx_v_sdInfo_u_u_rowptr = ((PyArrayObject *)values[27]);
3383  __pyx_v_sdInfo_u_u_colind = ((PyArrayObject *)values[28]);
3384  __pyx_v_q_a = ((PyArrayObject *)values[29]);
3385  __pyx_v_q_v = ((PyArrayObject *)values[30]);
3386  __pyx_v_q_r = ((PyArrayObject *)values[31]);
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3409  goto __pyx_L4_argument_unpacking_done;
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3457  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_ebqe_bc_advectiveFlux_u_ext), __pyx_ptype_5numpy_ndarray, 1, "ebqe_bc_advectiveFlux_u_ext", 0))) __PYX_ERR(0, 214, __pyx_L1_error)
3458  if (unlikely(!__Pyx_ArgTypeTest(((PyObject *)__pyx_v_ebqe_penalty), __pyx_ptype_5numpy_ndarray, 1, "ebqe_penalty", 0))) __PYX_ERR(0, 215, __pyx_L1_error)
3459  __pyx_r = __pyx_pf_3ADR_3ADR_4calculateResidual(((struct __pyx_obj_3ADR_ADR *)__pyx_v_self), __pyx_v_mesh_trial_ref, __pyx_v_mesh_grad_trial_ref, __pyx_v_mesh_dof, __pyx_v_mesh_l2g, __pyx_v_dV_ref, __pyx_v_u_trial_ref, __pyx_v_u_grad_trial_ref, __pyx_v_u_test_ref, __pyx_v_u_grad_test_ref, __pyx_v_elementDiameter, __pyx_v_cfl, __pyx_v_CT_sge, __pyx_v_sc_uref, __pyx_v_sc_alpha, __pyx_v_useMetrics, __pyx_v_mesh_trial_trace_ref, __pyx_v_mesh_grad_trial_trace_ref, __pyx_v_dS_ref, __pyx_v_u_trial_trace_ref, __pyx_v_u_grad_trial_trace_ref, __pyx_v_u_test_trace_ref, __pyx_v_u_grad_test_trace_ref, __pyx_v_normal_ref, __pyx_v_boundaryJac_ref, __pyx_v_nElements_global, __pyx_v_u_l2g, __pyx_v_u_dof, __pyx_v_sdInfo_u_u_rowptr, __pyx_v_sdInfo_u_u_colind, __pyx_v_q_a, __pyx_v_q_v, __pyx_v_q_r, __pyx_v_lag_shockCapturing, __pyx_v_shockCapturingDiffusion, __pyx_v_q_numDiff_u, __pyx_v_q_numDiff_u_last, __pyx_v_offset_u, __pyx_v_stride_u, __pyx_v_globalResidual, __pyx_v_nExteriorElementBoundaries_global, __pyx_v_exteriorElementBoundariesArray, __pyx_v_elementBoundaryElementsArray, __pyx_v_elementBoundaryLocalElementBoundariesArray, __pyx_v_ebqe_a, __pyx_v_ebqe_v, __pyx_v_isDOFBoundary_u, __pyx_v_ebqe_bc_u_ext, __pyx_v_isFluxBoundary_u, __pyx_v_isAdvectiveFluxBoundary_u, __pyx_v_ebqe_bc_flux_u_ext, __pyx_v_ebqe_bc_advectiveFlux_u_ext, __pyx_v_ebqe_penalty, __pyx_v_adjoint_sigma);
3460 
3461  /* function exit code */
3462  goto __pyx_L0;
3463  __pyx_L1_error:;
3464  __pyx_r = NULL;
3465  __pyx_L0:;
3466  __Pyx_RefNannyFinishContext();
3467  return __pyx_r;
3468 }
3469 
3470 static PyObject *__pyx_pf_3ADR_3ADR_4calculateResidual(struct __pyx_obj_3ADR_ADR *__pyx_v_self, PyArrayObject *__pyx_v_mesh_trial_ref, PyArrayObject *__pyx_v_mesh_grad_trial_ref, PyArrayObject *__pyx_v_mesh_dof, PyArrayObject *__pyx_v_mesh_l2g, PyArrayObject *__pyx_v_dV_ref, PyArrayObject *__pyx_v_u_trial_ref, PyArrayObject *__pyx_v_u_grad_trial_ref, PyArrayObject *__pyx_v_u_test_ref, PyArrayObject *__pyx_v_u_grad_test_ref, PyArrayObject *__pyx_v_elementDiameter, PyArrayObject *__pyx_v_cfl, double __pyx_v_CT_sge, double __pyx_v_sc_uref, double __pyx_v_sc_alpha, double __pyx_v_useMetrics, PyArrayObject *__pyx_v_mesh_trial_trace_ref, PyArrayObject *__pyx_v_mesh_grad_trial_trace_ref, PyArrayObject *__pyx_v_dS_ref, PyArrayObject *__pyx_v_u_trial_trace_ref, PyArrayObject *__pyx_v_u_grad_trial_trace_ref, PyArrayObject *__pyx_v_u_test_trace_ref, PyArrayObject *__pyx_v_u_grad_test_trace_ref, PyArrayObject *__pyx_v_normal_ref, PyArrayObject *__pyx_v_boundaryJac_ref, int __pyx_v_nElements_global, PyArrayObject *__pyx_v_u_l2g, PyArrayObject *__pyx_v_u_dof, PyArrayObject *__pyx_v_sdInfo_u_u_rowptr, PyArrayObject *__pyx_v_sdInfo_u_u_colind, PyArrayObject *__pyx_v_q_a, PyArrayObject *__pyx_v_q_v, PyArrayObject *__pyx_v_q_r, int __pyx_v_lag_shockCapturing, double __pyx_v_shockCapturingDiffusion, PyArrayObject *__pyx_v_q_numDiff_u, PyArrayObject *__pyx_v_q_numDiff_u_last, int __pyx_v_offset_u, int __pyx_v_stride_u, PyArrayObject *__pyx_v_globalResidual, int __pyx_v_nExteriorElementBoundaries_global, PyArrayObject *__pyx_v_exteriorElementBoundariesArray, PyArrayObject *__pyx_v_elementBoundaryElementsArray, PyArrayObject *__pyx_v_elementBoundaryLocalElementBoundariesArray, PyArrayObject *__pyx_v_ebqe_a, PyArrayObject *__pyx_v_ebqe_v, PyArrayObject *__pyx_v_isDOFBoundary_u, PyArrayObject *__pyx_v_ebqe_bc_u_ext, PyArrayObject *__pyx_v_isFluxBoundary_u, PyArrayObject *__pyx_v_isAdvectiveFluxBoundary_u, PyArrayObject *__pyx_v_ebqe_bc_flux_u_ext, PyArrayObject *__pyx_v_ebqe_bc_advectiveFlux_u_ext, PyArrayObject *__pyx_v_ebqe_penalty, double __pyx_v_adjoint_sigma) {
3471  PyObject *__pyx_r = NULL;
3472  __Pyx_RefNannyDeclarations
3473  __Pyx_RefNannySetupContext("calculateResidual", 0);
3474 
3475  /* "ADR.pyx":217
3476  * numpy.ndarray ebqe_penalty,
3477  * double adjoint_sigma):
3478  * self.thisptr.calculateResidual(<double*> mesh_trial_ref.data, # <<<<<<<<<<<<<<
3479  * <double*> mesh_grad_trial_ref.data,
3480  * <double*> mesh_dof.data,
3481  */
3482  __pyx_v_self->thisptr->calculateResidual(((double *)__pyx_v_mesh_trial_ref->data), ((double *)__pyx_v_mesh_grad_trial_ref->data), ((double *)__pyx_v_mesh_dof->data), ((int *)__pyx_v_mesh_l2g->data), ((double *)__pyx_v_dV_ref->data), ((double *)__pyx_v_u_trial_ref->data), ((double *)__pyx_v_u_grad_trial_ref->data), ((double *)__pyx_v_u_test_ref->data), ((double *)__pyx_v_u_grad_test_ref->data), ((double *)__pyx_v_elementDiameter->data), ((double *)__pyx_v_cfl->data), __pyx_v_CT_sge, __pyx_v_sc_uref, __pyx_v_sc_alpha, __pyx_v_useMetrics, ((double *)__pyx_v_mesh_trial_trace_ref->data), ((double *)__pyx_v_mesh_grad_trial_trace_ref->data), ((double *)__pyx_v_dS_ref->data), ((double *)__pyx_v_u_trial_trace_ref->data), ((double *)__pyx_v_u_grad_trial_trace_ref->data), ((double *)__pyx_v_u_test_trace_ref->data), ((double *)__pyx_v_u_grad_test_trace_ref->data), ((double *)__pyx_v_normal_ref->data), ((double *)__pyx_v_boundaryJac_ref->data), __pyx_v_nElements_global, ((int *)__pyx_v_u_l2g->data), ((double *)__pyx_v_u_dof->data), ((int *)__pyx_v_sdInfo_u_u_rowptr->data), ((int *)__pyx_v_sdInfo_u_u_colind->data), ((double *)__pyx_v_q_a->data), ((double *)__pyx_v_q_v->data), ((double *)__pyx_v_q_r->data), __pyx_v_lag_shockCapturing, __pyx_v_shockCapturingDiffusion, ((double *)__pyx_v_q_numDiff_u->data), ((double *)__pyx_v_q_numDiff_u_last->data), __pyx_v_offset_u, __pyx_v_stride_u, ((double *)__pyx_v_globalResidual->data), __pyx_v_nExteriorElementBoundaries_global, ((int *)__pyx_v_exteriorElementBoundariesArray->data), ((int *)__pyx_v_elementBoundaryElementsArray->data), ((int *)__pyx_v_elementBoundaryLocalElementBoundariesArray->data), ((double *)__pyx_v_ebqe_a->data), ((double *)__pyx_v_ebqe_v->data), ((int *)__pyx_v_isDOFBoundary_u->data), ((double *)__pyx_v_ebqe_bc_u_ext->data), ((int *)__pyx_v_isFluxBoundary_u->data), ((int *)__pyx_v_isAdvectiveFluxBoundary_u->data), ((double *)__pyx_v_ebqe_bc_flux_u_ext->data), ((double *)__pyx_v_ebqe_bc_advectiveFlux_u_ext->data), ((double *)__pyx_v_ebqe_penalty->data), __pyx_v_adjoint_sigma);
3483 
3484  /* "ADR.pyx":163
3485  * def __dealloc__(self):
3486  * del self.thisptr
3487  * def calculateResidual(self, # <<<<<<<<<<<<<<
3488  * numpy.ndarray mesh_trial_ref,
3489  * numpy.ndarray mesh_grad_trial_ref,
3490  */
3491 
3492  /* function exit code */
3493  __pyx_r = Py_None; __Pyx_INCREF(Py_None);
3494  __Pyx_XGIVEREF(__pyx_r);
3495  __Pyx_RefNannyFinishContext();
3496  return __pyx_r;
3497 }
3498 
3499 /* "ADR.pyx":270
3500  * <double*> ebqe_penalty.data,
3501  * adjoint_sigma)
3502  * def calculateJacobian(self, # <<<<<<<<<<<<<<
3503  * numpy.ndarray mesh_trial_ref,
3504  * numpy.ndarray mesh_grad_trial_ref,
3505  */
3506 
3507 /* Python wrapper */
3508 static PyObject *__pyx_pw_3ADR_3ADR_7calculateJacobian(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds); /*proto*/
3509 static char __pyx_doc_3ADR_3ADR_6calculateJacobian[] = "\n Optimized jacobian calculation\n ";
3510 static PyObject *__pyx_pw_3ADR_3ADR_7calculateJacobian(PyObject *__pyx_v_self, PyObject *__pyx_args, PyObject *__pyx_kwds) {
3511  PyArrayObject *__pyx_v_mesh_trial_ref = 0;
3512  PyArrayObject *__pyx_v_mesh_grad_trial_ref = 0;
3513  PyArrayObject *__pyx_v_mesh_dof = 0;
3514  PyArrayObject *__pyx_v_mesh_l2g = 0;
3515  PyArrayObject *__pyx_v_dV_ref = 0;
3516  PyArrayObject *__pyx_v_u_trial_ref = 0;
3517  PyArrayObject *__pyx_v_u_grad_trial_ref = 0;
3518  PyArrayObject *__pyx_v_u_test_ref = 0;
3519  PyArrayObject *__pyx_v_u_grad_test_ref = 0;
3520  PyArrayObject *__pyx_v_elementDiameter = 0;
3521  PyArrayObject *__pyx_v_cfl = 0;
3522  double __pyx_v_CT_sge;
3523  double __pyx_v_sc_uref;
3524  double __pyx_v_sc_alpha;
3525  double __pyx_v_useMetrics;
3526  PyArrayObject *__pyx_v_mesh_trial_trace_ref = 0;
3527  PyArrayObject *__pyx_v_mesh_grad_trial_trace_ref = 0;
3528  PyArrayObject *__pyx_v_dS_ref = 0;
3529  PyArrayObject *__pyx_v_u_trial_trace_ref = 0;
3530  PyArrayObject *__pyx_v_u_grad_trial_trace_ref = 0;
3531  PyArrayObject *__pyx_v_u_test_trace_ref = 0;
3532  PyArrayObject *__pyx_v_u_grad_test_trace_ref = 0;
3533  PyArrayObject *__pyx_v_normal_ref = 0;
3534  PyArrayObject *__pyx_v_boundaryJac_ref = 0;
3535  int __pyx_v_nElements_global;
3536  PyArrayObject *__pyx_v_u_l2g = 0;
3537  PyArrayObject *__pyx_v_u_dof = 0;
3538  PyArrayObject *__pyx_v_sdInfo_u_u_rowptr = 0;
3539  PyArrayObject *__pyx_v_sdInfo_u_u_colind = 0;
3540  PyArrayObject *__pyx_v_q_a = 0;
3541  PyArrayObject *__pyx_v_q_v = 0;
3542  PyArrayObject *__pyx_v_q_r = 0;
3543  int __pyx_v_lag_shockCapturing;
3544  double __pyx_v_shockCapturingDiffusion;
3545  PyArrayObject *__pyx_v_q_numDiff_u = 0;
3546  PyArrayObject *__pyx_v_q_numDiff_u_last = 0;
3547  PyArrayObject *__pyx_v_csrRowIndeces_u_u = 0;
3548  PyArrayObject *__pyx_v_csrColumnOffsets_u_u = 0;
3549  PyObject *__pyx_v_globalJacobian = 0;
3550  int __pyx_v_nExteriorElementBoundaries_global;
3551  PyArrayObject *__pyx_v_exteriorElementBoundariesArray = 0;
3552  PyArrayObject *__pyx_v_elementBoundaryElementsArray = 0;
3553  PyArrayObject *__pyx_v_elementBoundaryLocalElementBoundariesArray = 0;
3554  PyArrayObject *__pyx_v_ebqe_a = 0;
3555  PyArrayObject *__pyx_v_ebqe_v = 0;
3556  PyArrayObject *__pyx_v_isDOFBoundary_u = 0;
3557  PyArrayObject *__pyx_v_ebqe_bc_u_ext = 0;
3558  PyArrayObject *__pyx_v_isFluxBoundary_u = 0;
3559  PyArrayObject *__pyx_v_isAdvectiveFluxBoundary_u = 0;
3560  PyArrayObject *__pyx_v_ebqe_bc_flux_u_ext = 0;
3561  PyArrayObject *__pyx_v_ebqe_bc_advectiveFlux_u_ext = 0;
3562  PyArrayObject *__pyx_v_csrColumnOffsets_eb_u_u = 0;
3563  PyArrayObject *__pyx_v_ebqe_penalty = 0;
3564  double __pyx_v_adjoint_sigma;
3565  PyObject *__pyx_r = 0;
3566  __Pyx_RefNannyDeclarations
3567  __Pyx_RefNannySetupContext("calculateJacobian (wrapper)", 0);
3568  {
3569  static PyObject **__pyx_pyargnames[] = {&__pyx_n_s_mesh_trial_ref,&__pyx_n_s_mesh_grad_trial_ref,&__pyx_n_s_mesh_dof,&__pyx_n_s_mesh_l2g,&__pyx_n_s_dV_ref,&__pyx_n_s_u_trial_ref,&__pyx_n_s_u_grad_trial_ref,&__pyx_n_s_u_test_ref,&__pyx_n_s_u_grad_test_ref,&__pyx_n_s_elementDiameter,&__pyx_n_s_cfl,&__pyx_n_s_CT_sge,&__pyx_n_s_sc_uref,&__pyx_n_s_sc_alpha,&__pyx_n_s_useMetrics,&__pyx_n_s_mesh_trial_trace_ref,&__pyx_n_s_mesh_grad_trial_trace_ref,&__pyx_n_s_dS_ref,&__pyx_n_s_u_trial_trace_ref,&__pyx_n_s_u_grad_trial_trace_ref,&__pyx_n_s_u_test_trace_ref,&__pyx_n_s_u_grad_test_trace_ref,&__pyx_n_s_normal_ref,&__pyx_n_s_boundaryJac_ref,&__pyx_n_s_nElements_global,&__pyx_n_s_u_l2g,&__pyx_n_s_u_dof,&__pyx_n_s_sdInfo_u_u_rowptr,&__pyx_n_s_sdInfo_u_u_colind,&__pyx_n_s_q_a,&__pyx_n_s_q_v,&__pyx_n_s_q_r,&__pyx_n_s_lag_shockCapturing,&__pyx_n_s_shockCapturingDiffusion,&__pyx_n_s_q_numDiff_u,&__pyx_n_s_q_numDiff_u_last,&__pyx_n_s_csrRowIndeces_u_u,&__pyx_n_s_csrColumnOffsets_u_u,&__pyx_n_s_globalJacobian,&__pyx_n_s_nExteriorElementBoundaries_globa,&__pyx_n_s_exteriorElementBoundariesArray,&__pyx_n_s_elementBoundaryElementsArray,&__pyx_n_s_elementBoundaryLocalElementBound,&__pyx_n_s_ebqe_a,&__pyx_n_s_ebqe_v,&__pyx_n_s_isDOFBoundary_u,&__pyx_n_s_ebqe_bc_u_ext,&__pyx_n_s_isFluxBoundary_u,&__pyx_n_s_isAdvectiveFluxBoundary_u,&__pyx_n_s_ebqe_bc_flux_u_ext,&__pyx_n_s_ebqe_bc_advectiveFlux_u_ext,&__pyx_n_s_csrColumnOffsets_eb_u_u,&__pyx_n_s_ebqe_penalty,&__pyx_n_s_adjoint_sigma,0};
3570  PyObject* values[54] = {0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0};
3571  if (unlikely(__pyx_kwds)) {
3572  Py_ssize_t kw_args;
3573  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
3574  switch (pos_args) {
3575  case 54: values[53] = PyTuple_GET_ITEM(__pyx_args, 53);
3576  case 53: values[52] = PyTuple_GET_ITEM(__pyx_args, 52);
3577  case 52: values[51] = PyTuple_GET_ITEM(__pyx_args, 51);
3578  case 51: values[50] = PyTuple_GET_ITEM(__pyx_args, 50);
3579  case 50: values[49] = PyTuple_GET_ITEM(__pyx_args, 49);
3580  case 49: values[48] = PyTuple_GET_ITEM(__pyx_args, 48);
3581  case 48: values[47] = PyTuple_GET_ITEM(__pyx_args, 47);
3582  case 47: values[46] = PyTuple_GET_ITEM(__pyx_args, 46);
3583  case 46: values[45] = PyTuple_GET_ITEM(__pyx_args, 45);
3584  case 45: values[44] = PyTuple_GET_ITEM(__pyx_args, 44);
3585  case 44: values[43] = PyTuple_GET_ITEM(__pyx_args, 43);
3586  case 43: values[42] = PyTuple_GET_ITEM(__pyx_args, 42);
3587  case 42: values[41] = PyTuple_GET_ITEM(__pyx_args, 41);
3588  case 41: values[40] = PyTuple_GET_ITEM(__pyx_args, 40);
3589  case 40: values[39] = PyTuple_GET_ITEM(__pyx_args, 39);
3590  case 39: values[38] = PyTuple_GET_ITEM(__pyx_args, 38);
3591  case 38: values[37] = PyTuple_GET_ITEM(__pyx_args, 37);
3592  case 37: values[36] = PyTuple_GET_ITEM(__pyx_args, 36);
3593  case 36: values[35] = PyTuple_GET_ITEM(__pyx_args, 35);
3594  case 35: values[34] = PyTuple_GET_ITEM(__pyx_args, 34);
3595  case 34: values[33] = PyTuple_GET_ITEM(__pyx_args, 33);
3596  case 33: values[32] = PyTuple_GET_ITEM(__pyx_args, 32);
3597  case 32: values[31] = PyTuple_GET_ITEM(__pyx_args, 31);
3598  case 31: values[30] = PyTuple_GET_ITEM(__pyx_args, 30);
3599  case 30: values[29] = PyTuple_GET_ITEM(__pyx_args, 29);
3600  case 29: values[28] = PyTuple_GET_ITEM(__pyx_args, 28);
3601  case 28: values[27] = PyTuple_GET_ITEM(__pyx_args, 27);
3602  case 27: values[26] = PyTuple_GET_ITEM(__pyx_args, 26);
3603  case 26: values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
3604  case 25: values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
3605  case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
3606  case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
3607  case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
3608  case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
3609  case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
3610  case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
3611  case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
3612  case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
3613  case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
3614  case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
3615  case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
3616  case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
3617  case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
3618  case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
3619  case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
3620  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
3621  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
3622  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
3623  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
3624  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
3625  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
3626  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
3627  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
3628  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
3629  case 0: break;
3630  default: goto __pyx_L5_argtuple_error;
3631  }
3632  kw_args = PyDict_Size(__pyx_kwds);
3633  switch (pos_args) {
3634  case 0:
3635  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_trial_ref)) != 0)) kw_args--;
3636  else goto __pyx_L5_argtuple_error;
3637  case 1:
3638  if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_grad_trial_ref)) != 0)) kw_args--;
3639  else {
3640  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 1); __PYX_ERR(0, 270, __pyx_L3_error)
3641  }
3642  case 2:
3643  if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_dof)) != 0)) kw_args--;
3644  else {
3645  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 2); __PYX_ERR(0, 270, __pyx_L3_error)
3646  }
3647  case 3:
3648  if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_l2g)) != 0)) kw_args--;
3649  else {
3650  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 3); __PYX_ERR(0, 270, __pyx_L3_error)
3651  }
3652  case 4:
3653  if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dV_ref)) != 0)) kw_args--;
3654  else {
3655  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 4); __PYX_ERR(0, 270, __pyx_L3_error)
3656  }
3657  case 5:
3658  if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_trial_ref)) != 0)) kw_args--;
3659  else {
3660  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 5); __PYX_ERR(0, 270, __pyx_L3_error)
3661  }
3662  case 6:
3663  if (likely((values[6] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_grad_trial_ref)) != 0)) kw_args--;
3664  else {
3665  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 6); __PYX_ERR(0, 270, __pyx_L3_error)
3666  }
3667  case 7:
3668  if (likely((values[7] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_test_ref)) != 0)) kw_args--;
3669  else {
3670  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 7); __PYX_ERR(0, 270, __pyx_L3_error)
3671  }
3672  case 8:
3673  if (likely((values[8] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_grad_test_ref)) != 0)) kw_args--;
3674  else {
3675  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 8); __PYX_ERR(0, 270, __pyx_L3_error)
3676  }
3677  case 9:
3678  if (likely((values[9] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementDiameter)) != 0)) kw_args--;
3679  else {
3680  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 9); __PYX_ERR(0, 270, __pyx_L3_error)
3681  }
3682  case 10:
3683  if (likely((values[10] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_cfl)) != 0)) kw_args--;
3684  else {
3685  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 10); __PYX_ERR(0, 270, __pyx_L3_error)
3686  }
3687  case 11:
3688  if (likely((values[11] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_CT_sge)) != 0)) kw_args--;
3689  else {
3690  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 11); __PYX_ERR(0, 270, __pyx_L3_error)
3691  }
3692  case 12:
3693  if (likely((values[12] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sc_uref)) != 0)) kw_args--;
3694  else {
3695  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 12); __PYX_ERR(0, 270, __pyx_L3_error)
3696  }
3697  case 13:
3698  if (likely((values[13] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sc_alpha)) != 0)) kw_args--;
3699  else {
3700  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 13); __PYX_ERR(0, 270, __pyx_L3_error)
3701  }
3702  case 14:
3703  if (likely((values[14] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_useMetrics)) != 0)) kw_args--;
3704  else {
3705  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 14); __PYX_ERR(0, 270, __pyx_L3_error)
3706  }
3707  case 15:
3708  if (likely((values[15] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_trial_trace_ref)) != 0)) kw_args--;
3709  else {
3710  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 15); __PYX_ERR(0, 270, __pyx_L3_error)
3711  }
3712  case 16:
3713  if (likely((values[16] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_mesh_grad_trial_trace_ref)) != 0)) kw_args--;
3714  else {
3715  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 16); __PYX_ERR(0, 270, __pyx_L3_error)
3716  }
3717  case 17:
3718  if (likely((values[17] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dS_ref)) != 0)) kw_args--;
3719  else {
3720  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 17); __PYX_ERR(0, 270, __pyx_L3_error)
3721  }
3722  case 18:
3723  if (likely((values[18] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_trial_trace_ref)) != 0)) kw_args--;
3724  else {
3725  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 18); __PYX_ERR(0, 270, __pyx_L3_error)
3726  }
3727  case 19:
3728  if (likely((values[19] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_grad_trial_trace_ref)) != 0)) kw_args--;
3729  else {
3730  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 19); __PYX_ERR(0, 270, __pyx_L3_error)
3731  }
3732  case 20:
3733  if (likely((values[20] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_test_trace_ref)) != 0)) kw_args--;
3734  else {
3735  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 20); __PYX_ERR(0, 270, __pyx_L3_error)
3736  }
3737  case 21:
3738  if (likely((values[21] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_grad_test_trace_ref)) != 0)) kw_args--;
3739  else {
3740  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 21); __PYX_ERR(0, 270, __pyx_L3_error)
3741  }
3742  case 22:
3743  if (likely((values[22] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_normal_ref)) != 0)) kw_args--;
3744  else {
3745  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 22); __PYX_ERR(0, 270, __pyx_L3_error)
3746  }
3747  case 23:
3748  if (likely((values[23] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_boundaryJac_ref)) != 0)) kw_args--;
3749  else {
3750  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 23); __PYX_ERR(0, 270, __pyx_L3_error)
3751  }
3752  case 24:
3753  if (likely((values[24] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nElements_global)) != 0)) kw_args--;
3754  else {
3755  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 24); __PYX_ERR(0, 270, __pyx_L3_error)
3756  }
3757  case 25:
3758  if (likely((values[25] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_l2g)) != 0)) kw_args--;
3759  else {
3760  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 25); __PYX_ERR(0, 270, __pyx_L3_error)
3761  }
3762  case 26:
3763  if (likely((values[26] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_u_dof)) != 0)) kw_args--;
3764  else {
3765  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 26); __PYX_ERR(0, 270, __pyx_L3_error)
3766  }
3767  case 27:
3768  if (likely((values[27] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sdInfo_u_u_rowptr)) != 0)) kw_args--;
3769  else {
3770  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 27); __PYX_ERR(0, 270, __pyx_L3_error)
3771  }
3772  case 28:
3773  if (likely((values[28] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sdInfo_u_u_colind)) != 0)) kw_args--;
3774  else {
3775  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 28); __PYX_ERR(0, 270, __pyx_L3_error)
3776  }
3777  case 29:
3778  if (likely((values[29] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_a)) != 0)) kw_args--;
3779  else {
3780  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 29); __PYX_ERR(0, 270, __pyx_L3_error)
3781  }
3782  case 30:
3783  if (likely((values[30] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_v)) != 0)) kw_args--;
3784  else {
3785  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 30); __PYX_ERR(0, 270, __pyx_L3_error)
3786  }
3787  case 31:
3788  if (likely((values[31] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_r)) != 0)) kw_args--;
3789  else {
3790  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 31); __PYX_ERR(0, 270, __pyx_L3_error)
3791  }
3792  case 32:
3793  if (likely((values[32] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_lag_shockCapturing)) != 0)) kw_args--;
3794  else {
3795  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 32); __PYX_ERR(0, 270, __pyx_L3_error)
3796  }
3797  case 33:
3798  if (likely((values[33] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_shockCapturingDiffusion)) != 0)) kw_args--;
3799  else {
3800  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 33); __PYX_ERR(0, 270, __pyx_L3_error)
3801  }
3802  case 34:
3803  if (likely((values[34] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_numDiff_u)) != 0)) kw_args--;
3804  else {
3805  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 34); __PYX_ERR(0, 270, __pyx_L3_error)
3806  }
3807  case 35:
3808  if (likely((values[35] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_q_numDiff_u_last)) != 0)) kw_args--;
3809  else {
3810  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 35); __PYX_ERR(0, 270, __pyx_L3_error)
3811  }
3812  case 36:
3813  if (likely((values[36] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_csrRowIndeces_u_u)) != 0)) kw_args--;
3814  else {
3815  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 36); __PYX_ERR(0, 270, __pyx_L3_error)
3816  }
3817  case 37:
3818  if (likely((values[37] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_csrColumnOffsets_u_u)) != 0)) kw_args--;
3819  else {
3820  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 37); __PYX_ERR(0, 270, __pyx_L3_error)
3821  }
3822  case 38:
3823  if (likely((values[38] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_globalJacobian)) != 0)) kw_args--;
3824  else {
3825  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 38); __PYX_ERR(0, 270, __pyx_L3_error)
3826  }
3827  case 39:
3828  if (likely((values[39] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nExteriorElementBoundaries_globa)) != 0)) kw_args--;
3829  else {
3830  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 39); __PYX_ERR(0, 270, __pyx_L3_error)
3831  }
3832  case 40:
3833  if (likely((values[40] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_exteriorElementBoundariesArray)) != 0)) kw_args--;
3834  else {
3835  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 40); __PYX_ERR(0, 270, __pyx_L3_error)
3836  }
3837  case 41:
3838  if (likely((values[41] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBoundaryElementsArray)) != 0)) kw_args--;
3839  else {
3840  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 41); __PYX_ERR(0, 270, __pyx_L3_error)
3841  }
3842  case 42:
3843  if (likely((values[42] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBoundaryLocalElementBound)) != 0)) kw_args--;
3844  else {
3845  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 42); __PYX_ERR(0, 270, __pyx_L3_error)
3846  }
3847  case 43:
3848  if (likely((values[43] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_a)) != 0)) kw_args--;
3849  else {
3850  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 43); __PYX_ERR(0, 270, __pyx_L3_error)
3851  }
3852  case 44:
3853  if (likely((values[44] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_v)) != 0)) kw_args--;
3854  else {
3855  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 44); __PYX_ERR(0, 270, __pyx_L3_error)
3856  }
3857  case 45:
3858  if (likely((values[45] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_isDOFBoundary_u)) != 0)) kw_args--;
3859  else {
3860  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 45); __PYX_ERR(0, 270, __pyx_L3_error)
3861  }
3862  case 46:
3863  if (likely((values[46] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_bc_u_ext)) != 0)) kw_args--;
3864  else {
3865  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 46); __PYX_ERR(0, 270, __pyx_L3_error)
3866  }
3867  case 47:
3868  if (likely((values[47] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_isFluxBoundary_u)) != 0)) kw_args--;
3869  else {
3870  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 47); __PYX_ERR(0, 270, __pyx_L3_error)
3871  }
3872  case 48:
3873  if (likely((values[48] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_isAdvectiveFluxBoundary_u)) != 0)) kw_args--;
3874  else {
3875  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 48); __PYX_ERR(0, 270, __pyx_L3_error)
3876  }
3877  case 49:
3878  if (likely((values[49] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_bc_flux_u_ext)) != 0)) kw_args--;
3879  else {
3880  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 49); __PYX_ERR(0, 270, __pyx_L3_error)
3881  }
3882  case 50:
3883  if (likely((values[50] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_bc_advectiveFlux_u_ext)) != 0)) kw_args--;
3884  else {
3885  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 50); __PYX_ERR(0, 270, __pyx_L3_error)
3886  }
3887  case 51:
3888  if (likely((values[51] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_csrColumnOffsets_eb_u_u)) != 0)) kw_args--;
3889  else {
3890  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 51); __PYX_ERR(0, 270, __pyx_L3_error)
3891  }
3892  case 52:
3893  if (likely((values[52] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_ebqe_penalty)) != 0)) kw_args--;
3894  else {
3895  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 52); __PYX_ERR(0, 270, __pyx_L3_error)
3896  }
3897  case 53:
3898  if (likely((values[53] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_adjoint_sigma)) != 0)) kw_args--;
3899  else {
3900  __Pyx_RaiseArgtupleInvalid("calculateJacobian", 1, 54, 54, 53); __PYX_ERR(0, 270, __pyx_L3_error)
3901  }
3902  }
3903  if (unlikely(kw_args > 0)) {
3904  if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "calculateJacobian") < 0)) __PYX_ERR(0, 270, __pyx_L3_error)
3905  }
3906  } else if (PyTuple_GET_SIZE(__pyx_args) != 54) {
3907  goto __pyx_L5_argtuple_error;
3908  } else {
3909  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
3910  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
3911  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
3912  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
3913  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
3914  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
3915  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
3916  values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
3917  values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
3918  values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
3919  values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
3920  values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
3921  values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
3922  values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
3923  values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
3924  values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
3925  values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
3926  values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
3927  values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
3928  values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
3929  values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
3930  values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
3931  values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
3932  values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
3933  values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
3934  values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
3935  values[26] = PyTuple_GET_ITEM(__pyx_args, 26);
3936  values[27] = PyTuple_GET_ITEM(__pyx_args, 27);
3937  values[28] = PyTuple_GET_ITEM(__pyx_args, 28);
3938  values[29] = PyTuple_GET_ITEM(__pyx_args, 29);
3939  values[30] = PyTuple_GET_ITEM(__pyx_args, 30);
3940  values[31] = PyTuple_GET_ITEM(__pyx_args, 31);
3941  values[32] = PyTuple_GET_ITEM(__pyx_args, 32);
3942  values[33] = PyTuple_GET_ITEM(__pyx_args, 33);
3943  values[34] = PyTuple_GET_ITEM(__pyx_args, 34);
3944  values[35] = PyTuple_GET_ITEM(__pyx_args, 35);
3945  values[36] = PyTuple_GET_ITEM(__pyx_args, 36);
3946  values[37] = PyTuple_GET_ITEM(__pyx_args, 37);
3947  values[38] = PyTuple_GET_ITEM(__pyx_args, 38);
3948  values[39] = PyTuple_GET_ITEM(__pyx_args, 39);
3949  values[40] = PyTuple_GET_ITEM(__pyx_args, 40);
3950  values[41] = PyTuple_GET_ITEM(__pyx_args, 41);
3951  values[42] = PyTuple_GET_ITEM(__pyx_args, 42);
3952  values[43] = PyTuple_GET_ITEM(__pyx_args, 43);
3953  values[44] = PyTuple_GET_ITEM(__pyx_args, 44);
3954  values[45] = PyTuple_GET_ITEM(__pyx_args, 45);
3955  values[46] = PyTuple_GET_ITEM(__pyx_args, 46);
3956  values[47] = PyTuple_GET_ITEM(__pyx_args, 47);
3957  values[48] = PyTuple_GET_ITEM(__pyx_args, 48);
3958  values[49] = PyTuple_GET_ITEM(__pyx_args, 49);
3959  values[50] = PyTuple_GET_ITEM(__pyx_args, 50);
3960  values[51] = PyTuple_GET_ITEM(__pyx_args, 51);
3961  values[52] = PyTuple_GET_ITEM(__pyx_args, 52);
3962  values[53] = PyTuple_GET_ITEM(__pyx_args, 53);
3963  }
3964  __pyx_v_mesh_trial_ref = ((PyArrayObject *)values[0]);
3965  __pyx_v_mesh_grad_trial_ref = ((PyArrayObject *)values[1]);
3966  __pyx_v_mesh_dof = ((PyArrayObject *)values[2]);
3967  __pyx_v_mesh_l2g = ((PyArrayObject *)values[3]);
3968  __pyx_v_dV_ref = ((PyArrayObject *)values[4]);
3969  __pyx_v_u_trial_ref = ((PyArrayObject *)values[5]);
3970  __pyx_v_u_grad_trial_ref = ((PyArrayObject *)values[6]);
3971  __pyx_v_u_test_ref = ((PyArrayObject *)values[7]);
3972  __pyx_v_u_grad_test_ref = ((PyArrayObject *)values[8]);
3973  __pyx_v_elementDiameter = ((PyArrayObject *)values[9]);
3974  __pyx_v_cfl = ((PyArrayObject *)values[10]);
3975  __pyx_v_CT_sge = __pyx_PyFloat_AsDouble(values[11]); if (unlikely((__pyx_v_CT_sge == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 282, __pyx_L3_error)
3976  __pyx_v_sc_uref = __pyx_PyFloat_AsDouble(values[12]); if (unlikely((__pyx_v_sc_uref == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 283, __pyx_L3_error)
3977  __pyx_v_sc_alpha = __pyx_PyFloat_AsDouble(values[13]); if (unlikely((__pyx_v_sc_alpha == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 284, __pyx_L3_error)
3978  __pyx_v_useMetrics = __pyx_PyFloat_AsDouble(values[14]); if (unlikely((__pyx_v_useMetrics == (double)-1) && PyErr_Occurred())) __PYX_ERR(0, 285, __pyx_L3_error)
3979  __pyx_v_mesh_trial_trace_ref = ((PyArrayObject *)values[15]);
3980  __pyx_v_mesh_grad_trial_trace_ref = ((PyArrayObject *)values[16]);
3981  __pyx_v_dS_ref = ((PyArrayObject *)values[17]);
3982  __pyx_v_u_trial_trace_ref = ((PyArrayObject *)values[18]);
3983  __pyx_v_u_grad_trial_trace_ref = ((PyArrayObject *)values[19]);
3984  __pyx_v_u_test_trace_ref = ((PyArrayObject *)values[20]);
3985  __pyx_v_u_grad_test_trace_ref = ((PyArrayObject *)values[21]);
3986  __pyx_v_normal_ref = ((PyArrayObject *)values[22]);
3987  __pyx_v_boundaryJac_ref = ((PyArrayObject *)values[23]);
3988  __pyx_v_nElements_global = __Pyx_PyInt_As_int(values[24]); if (unlikely((__pyx_v_nElements_global == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 295, __pyx_L3_error)
3989  __pyx_v_u_l2g = ((PyArrayObject *)values[25]);
3990  __pyx_v_u_dof = ((PyArrayObject *)values[26]);
3991  __pyx_v_sdInfo_u_u_rowptr = ((PyArrayObject *)values[27]);
3992  __pyx_v_sdInfo_u_u_colind = ((PyArrayObject *)values[28]);
3993  __pyx_v_q_a = ((PyArrayObject *)values[29]);
3994  __pyx_v_q_v = ((PyArrayObject *)values[30]);
3995  __pyx_v_q_r = ((PyArrayObject *)values[31]);
3996  __pyx_v_lag_shockCapturing = __Pyx_PyInt_As_int(values[32]); if (unlikely((__pyx_v_lag_shockCapturing == (int)-1) && PyErr_Occurred())) __PYX_ERR(0, 303, __pyx_L3_error)
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6245  * getAdvectiveFluxBoundaryConditions,
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6264  * proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_NIPG_exterior.__init__(self,vt,getPointwiseBoundaryConditions,
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6268  * NumericalFlux = NumericalFlux_SIPG
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6304  __Pyx_INCREF(__pyx_v_self);
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6307  __Pyx_INCREF(__pyx_v_vt);
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6331  * getDiffusiveFluxBoundaryConditions):
6332  */
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6351  * """
6352  * from proteus.ctransportCoefficients import L2projectEvaluate
6353  * def __init__(self,aOfX,fOfX,velocity=None,nc=1,nd=2,l2proj=None, # <<<<<<<<<<<<<<
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6355  * forceStrongDirichlet=False,
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6371  PyObject *__pyx_v_useMetrics = 0;
6372  PyObject *__pyx_v_sc_uref = 0;
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6380  values[3] = ((PyObject *)((PyObject *)Py_None));
6381  values[4] = ((PyObject *)((PyObject *)__pyx_int_1));
6382  values[5] = ((PyObject *)((PyObject *)__pyx_int_2));
6383  values[6] = ((PyObject *)((PyObject *)Py_None));
6384 
6385  /* "ADR.pyx":473
6386  * from proteus.ctransportCoefficients import L2projectEvaluate
6387  * def __init__(self,aOfX,fOfX,velocity=None,nc=1,nd=2,l2proj=None,
6388  * timeVaryingCoefficients=False, # <<<<<<<<<<<<<<
6389  * forceStrongDirichlet=False,
6390  * useMetrics=0.0,
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6392  values[7] = ((PyObject *)((PyObject *)Py_False));
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6394  /* "ADR.pyx":474
6395  * def __init__(self,aOfX,fOfX,velocity=None,nc=1,nd=2,l2proj=None,
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6397  * forceStrongDirichlet=False, # <<<<<<<<<<<<<<
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6399  * sc_uref=1.0,
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6403  values[10] = ((PyObject *)((PyObject*)__pyx_float_1_0));
6404  values[11] = ((PyObject *)((PyObject*)__pyx_float_1_0));
6405  if (unlikely(__pyx_kwds)) {
6406  Py_ssize_t kw_args;
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6408  switch (pos_args) {
6409  case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
6410  case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
6411  case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
6412  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
6413  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
6414  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
6415  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
6416  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
6417  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
6418  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
6419  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
6420  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
6421  case 0: break;
6422  default: goto __pyx_L5_argtuple_error;
6423  }
6424  kw_args = PyDict_Size(__pyx_kwds);
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6427  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
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6439  case 3:
6440  if (kw_args > 0) {
6441  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_velocity);
6442  if (value) { values[3] = value; kw_args--; }
6443  }
6444  case 4:
6445  if (kw_args > 0) {
6446  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nc);
6447  if (value) { values[4] = value; kw_args--; }
6448  }
6449  case 5:
6450  if (kw_args > 0) {
6451  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_nd);
6452  if (value) { values[5] = value; kw_args--; }
6453  }
6454  case 6:
6455  if (kw_args > 0) {
6456  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_l2proj);
6457  if (value) { values[6] = value; kw_args--; }
6458  }
6459  case 7:
6460  if (kw_args > 0) {
6461  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_timeVaryingCoefficients);
6462  if (value) { values[7] = value; kw_args--; }
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6464  case 8:
6465  if (kw_args > 0) {
6466  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_forceStrongDirichlet);
6467  if (value) { values[8] = value; kw_args--; }
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6469  case 9:
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6471  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_useMetrics);
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6491  case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
6492  case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
6493  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
6494  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
6495  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
6496  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
6497  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
6498  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
6499  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
6500  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
6501  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
6502  break;
6503  default: goto __pyx_L5_argtuple_error;
6504  }
6505  }
6506  __pyx_v_self = values[0];
6507  __pyx_v_aOfX = values[1];
6508  __pyx_v_fOfX = values[2];
6509  __pyx_v_velocity = values[3];
6510  __pyx_v_nc = values[4];
6511  __pyx_v_nd = values[5];
6512  __pyx_v_l2proj = values[6];
6513  __pyx_v_timeVaryingCoefficients = values[7];
6514  __pyx_v_forceStrongDirichlet = values[8];
6515  __pyx_v_useMetrics = values[9];
6516  __pyx_v_sc_uref = values[10];
6517  __pyx_v_sc_beta = values[11];
6518  }
6519  goto __pyx_L4_argument_unpacking_done;
6520  __pyx_L5_argtuple_error:;
6521  __Pyx_RaiseArgtupleInvalid("__init__", 0, 3, 12, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 472, __pyx_L3_error)
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6523  __Pyx_AddTraceback("ADR.Coefficients.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
6524  __Pyx_RefNannyFinishContext();
6525  return NULL;
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6528 
6529  /* "ADR.pyx":472
6530  * """
6531  * from proteus.ctransportCoefficients import L2projectEvaluate
6532  * def __init__(self,aOfX,fOfX,velocity=None,nc=1,nd=2,l2proj=None, # <<<<<<<<<<<<<<
6533  * timeVaryingCoefficients=False,
6534  * forceStrongDirichlet=False,
6535  */
6536 
6537  /* function exit code */
6538  __Pyx_RefNannyFinishContext();
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6541 
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6543  PyObject *__pyx_v_mass = NULL;
6544  PyObject *__pyx_v_advection = NULL;
6545  PyObject *__pyx_v_diffusion = NULL;
6546  PyObject *__pyx_v_potential = NULL;
6547  PyObject *__pyx_v_reaction = NULL;
6548  PyObject *__pyx_v_hamiltonian = NULL;
6549  PyObject *__pyx_v_i = NULL;
6550  PyObject *__pyx_v_sdInfo = NULL;
6551  CYTHON_UNUSED PyObject *__pyx_v_row = NULL;
6552  PyObject *__pyx_r = NULL;
6553  __Pyx_RefNannyDeclarations
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6555  PyObject *__pyx_t_2 = NULL;
6556  Py_ssize_t __pyx_t_3;
6557  PyObject *(*__pyx_t_4)(PyObject *);
6558  PyObject *__pyx_t_5 = NULL;
6559  PyObject *__pyx_t_6 = NULL;
6560  PyObject *__pyx_t_7 = NULL;
6561  PyObject *__pyx_t_8 = NULL;
6562  PyObject *__pyx_t_9 = NULL;
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6564 
6565  /* "ADR.pyx":478
6566  * sc_uref=1.0,
6567  * sc_beta=1.0):
6568  * self.useMetrics = useMetrics # <<<<<<<<<<<<<<
6569  * self.forceStrongDirichlet=forceStrongDirichlet
6570  * self.aOfX = aOfX
6571  */
6572  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_useMetrics, __pyx_v_useMetrics) < 0) __PYX_ERR(0, 478, __pyx_L1_error)
6573 
6574  /* "ADR.pyx":479
6575  * sc_beta=1.0):
6576  * self.useMetrics = useMetrics
6577  * self.forceStrongDirichlet=forceStrongDirichlet # <<<<<<<<<<<<<<
6578  * self.aOfX = aOfX
6579  * self.fOfX = fOfX
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6581  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_forceStrongDirichlet, __pyx_v_forceStrongDirichlet) < 0) __PYX_ERR(0, 479, __pyx_L1_error)
6582 
6583  /* "ADR.pyx":480
6584  * self.useMetrics = useMetrics
6585  * self.forceStrongDirichlet=forceStrongDirichlet
6586  * self.aOfX = aOfX # <<<<<<<<<<<<<<
6587  * self.fOfX = fOfX
6588  * self.velocity=velocity
6589  */
6590  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_aOfX, __pyx_v_aOfX) < 0) __PYX_ERR(0, 480, __pyx_L1_error)
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6592  /* "ADR.pyx":481
6593  * self.forceStrongDirichlet=forceStrongDirichlet
6594  * self.aOfX = aOfX
6595  * self.fOfX = fOfX # <<<<<<<<<<<<<<
6596  * self.velocity=velocity
6597  * self.nd = nd
6598  */
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6602  * self.aOfX = aOfX
6603  * self.fOfX = fOfX
6604  * self.velocity=velocity # <<<<<<<<<<<<<<
6605  * self.nd = nd
6606  * self.l2proj = l2proj
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6611  * self.fOfX = fOfX
6612  * self.velocity=velocity
6613  * self.nd = nd # <<<<<<<<<<<<<<
6614  * self.l2proj = l2proj
6615  * self.timeVaryingCoefficients=timeVaryingCoefficients
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6620  * self.velocity=velocity
6621  * self.nd = nd
6622  * self.l2proj = l2proj # <<<<<<<<<<<<<<
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6629  * self.nd = nd
6630  * self.l2proj = l2proj
6631  * self.timeVaryingCoefficients=timeVaryingCoefficients # <<<<<<<<<<<<<<
6632  * self.sc_uref=sc_uref
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6640  * self.sc_uref=sc_uref # <<<<<<<<<<<<<<
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6648  * self.sc_uref=sc_uref
6649  * self.sc_beta=sc_beta # <<<<<<<<<<<<<<
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6651  * advection = {}
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6658  * mass = {} # <<<<<<<<<<<<<<
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6670  * advection = {} # <<<<<<<<<<<<<<
6671  * diffusion = {}
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6681  * advection = {}
6682  * diffusion = {} # <<<<<<<<<<<<<<
6683  * potential = {}
6684  * reaction = {}
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6693  * diffusion = {}
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6705  * potential = {}
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6717  * reaction = {}
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6786  * hamiltonian = {}
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6789  * reaction[i] = {i : 'constant'}
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6831  * potential[i] = {i : 'u'} # <<<<<<<<<<<<<<
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6843  * hamiltonian = {}
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10295  values[23] = ((PyObject *)((PyObject *)Py_True));
10296 
10297  /* "ADR.pyx":595
10298  * name='defaultName',
10299  * reuse_trial_and_test_quadrature=True,
10300  * sd = True, # <<<<<<<<<<<<<<
10301  * movingDomain=False):#,
10302  * from proteus import Comm
10303  */
10304  values[24] = ((PyObject *)((PyObject *)Py_True));
10305 
10306  /* "ADR.pyx":596
10307  * reuse_trial_and_test_quadrature=True,
10308  * sd = True,
10309  * movingDomain=False):#, # <<<<<<<<<<<<<<
10310  * from proteus import Comm
10311  * #
10312  */
10313  values[25] = ((PyObject *)((PyObject *)Py_False));
10314  if (unlikely(__pyx_kwds)) {
10315  Py_ssize_t kw_args;
10316  const Py_ssize_t pos_args = PyTuple_GET_SIZE(__pyx_args);
10317  switch (pos_args) {
10318  case 26: values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
10319  case 25: values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
10320  case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
10321  case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
10322  case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
10323  case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
10324  case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
10325  case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
10326  case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
10327  case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
10328  case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
10329  case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
10330  case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
10331  case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
10332  case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
10333  case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
10334  case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
10335  case 9: values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
10336  case 8: values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
10337  case 7: values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
10338  case 6: values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
10339  case 5: values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
10340  case 4: values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
10341  case 3: values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
10342  case 2: values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
10343  case 1: values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
10344  case 0: break;
10345  default: goto __pyx_L5_argtuple_error;
10346  }
10347  kw_args = PyDict_Size(__pyx_kwds);
10348  switch (pos_args) {
10349  case 0:
10350  if (likely((values[0] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_self)) != 0)) kw_args--;
10351  else goto __pyx_L5_argtuple_error;
10352  case 1:
10353  if (likely((values[1] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_uDict)) != 0)) kw_args--;
10354  else {
10355  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 1); __PYX_ERR(0, 571, __pyx_L3_error)
10356  }
10357  case 2:
10358  if (likely((values[2] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_phiDict)) != 0)) kw_args--;
10359  else {
10360  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 2); __PYX_ERR(0, 571, __pyx_L3_error)
10361  }
10362  case 3:
10363  if (likely((values[3] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_testSpaceDict)) != 0)) kw_args--;
10364  else {
10365  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 3); __PYX_ERR(0, 571, __pyx_L3_error)
10366  }
10367  case 4:
10368  if (likely((values[4] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_matType)) != 0)) kw_args--;
10369  else {
10370  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 4); __PYX_ERR(0, 571, __pyx_L3_error)
10371  }
10372  case 5:
10373  if (likely((values[5] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dofBoundaryConditionsDict)) != 0)) kw_args--;
10374  else {
10375  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 5); __PYX_ERR(0, 571, __pyx_L3_error)
10376  }
10377  case 6:
10378  if (likely((values[6] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_dofBoundaryConditionsSetterDict)) != 0)) kw_args--;
10379  else {
10380  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 6); __PYX_ERR(0, 571, __pyx_L3_error)
10381  }
10382  case 7:
10383  if (likely((values[7] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_coefficients)) != 0)) kw_args--;
10384  else {
10385  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 7); __PYX_ERR(0, 571, __pyx_L3_error)
10386  }
10387  case 8:
10388  if (likely((values[8] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementQuadrature)) != 0)) kw_args--;
10389  else {
10390  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 8); __PYX_ERR(0, 571, __pyx_L3_error)
10391  }
10392  case 9:
10393  if (likely((values[9] = PyDict_GetItem(__pyx_kwds, __pyx_n_s_elementBoundaryQuadrature)) != 0)) kw_args--;
10394  else {
10395  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, 9); __PYX_ERR(0, 571, __pyx_L3_error)
10396  }
10397  case 10:
10398  if (kw_args > 0) {
10399  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_fluxBoundaryConditionsDict);
10400  if (value) { values[10] = value; kw_args--; }
10401  }
10402  case 11:
10403  if (kw_args > 0) {
10404  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_advectiveFluxBoundaryConditionsS);
10405  if (value) { values[11] = value; kw_args--; }
10406  }
10407  case 12:
10408  if (kw_args > 0) {
10409  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_diffusiveFluxBoundaryConditionsS);
10410  if (value) { values[12] = value; kw_args--; }
10411  }
10412  case 13:
10413  if (kw_args > 0) {
10414  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_stressTraceBoundaryConditionsSet);
10415  if (value) { values[13] = value; kw_args--; }
10416  }
10417  case 14:
10418  if (kw_args > 0) {
10419  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_stabilization);
10420  if (value) { values[14] = value; kw_args--; }
10421  }
10422  case 15:
10423  if (kw_args > 0) {
10424  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_shockCapturing);
10425  if (value) { values[15] = value; kw_args--; }
10426  }
10427  case 16:
10428  if (kw_args > 0) {
10429  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_conservativeFluxDict);
10430  if (value) { values[16] = value; kw_args--; }
10431  }
10432  case 17:
10433  if (kw_args > 0) {
10434  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_numericalFluxType);
10435  if (value) { values[17] = value; kw_args--; }
10436  }
10437  case 18:
10438  if (kw_args > 0) {
10439  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_TimeIntegrationClass);
10440  if (value) { values[18] = value; kw_args--; }
10441  }
10442  case 19:
10443  if (kw_args > 0) {
10444  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_massLumping);
10445  if (value) { values[19] = value; kw_args--; }
10446  }
10447  case 20:
10448  if (kw_args > 0) {
10449  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_reactionLumping);
10450  if (value) { values[20] = value; kw_args--; }
10451  }
10452  case 21:
10453  if (kw_args > 0) {
10454  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_options);
10455  if (value) { values[21] = value; kw_args--; }
10456  }
10457  case 22:
10458  if (kw_args > 0) {
10459  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_name);
10460  if (value) { values[22] = value; kw_args--; }
10461  }
10462  case 23:
10463  if (kw_args > 0) {
10464  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_reuse_trial_and_test_quadrature);
10465  if (value) { values[23] = value; kw_args--; }
10466  }
10467  case 24:
10468  if (kw_args > 0) {
10469  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_sd);
10470  if (value) { values[24] = value; kw_args--; }
10471  }
10472  case 25:
10473  if (kw_args > 0) {
10474  PyObject* value = PyDict_GetItem(__pyx_kwds, __pyx_n_s_movingDomain);
10475  if (value) { values[25] = value; kw_args--; }
10476  }
10477  }
10478  if (unlikely(kw_args > 0)) {
10479  if (unlikely(__Pyx_ParseOptionalKeywords(__pyx_kwds, __pyx_pyargnames, 0, values, pos_args, "__init__") < 0)) __PYX_ERR(0, 571, __pyx_L3_error)
10480  }
10481  } else {
10482  switch (PyTuple_GET_SIZE(__pyx_args)) {
10483  case 26: values[25] = PyTuple_GET_ITEM(__pyx_args, 25);
10484  case 25: values[24] = PyTuple_GET_ITEM(__pyx_args, 24);
10485  case 24: values[23] = PyTuple_GET_ITEM(__pyx_args, 23);
10486  case 23: values[22] = PyTuple_GET_ITEM(__pyx_args, 22);
10487  case 22: values[21] = PyTuple_GET_ITEM(__pyx_args, 21);
10488  case 21: values[20] = PyTuple_GET_ITEM(__pyx_args, 20);
10489  case 20: values[19] = PyTuple_GET_ITEM(__pyx_args, 19);
10490  case 19: values[18] = PyTuple_GET_ITEM(__pyx_args, 18);
10491  case 18: values[17] = PyTuple_GET_ITEM(__pyx_args, 17);
10492  case 17: values[16] = PyTuple_GET_ITEM(__pyx_args, 16);
10493  case 16: values[15] = PyTuple_GET_ITEM(__pyx_args, 15);
10494  case 15: values[14] = PyTuple_GET_ITEM(__pyx_args, 14);
10495  case 14: values[13] = PyTuple_GET_ITEM(__pyx_args, 13);
10496  case 13: values[12] = PyTuple_GET_ITEM(__pyx_args, 12);
10497  case 12: values[11] = PyTuple_GET_ITEM(__pyx_args, 11);
10498  case 11: values[10] = PyTuple_GET_ITEM(__pyx_args, 10);
10499  case 10: values[9] = PyTuple_GET_ITEM(__pyx_args, 9);
10500  values[8] = PyTuple_GET_ITEM(__pyx_args, 8);
10501  values[7] = PyTuple_GET_ITEM(__pyx_args, 7);
10502  values[6] = PyTuple_GET_ITEM(__pyx_args, 6);
10503  values[5] = PyTuple_GET_ITEM(__pyx_args, 5);
10504  values[4] = PyTuple_GET_ITEM(__pyx_args, 4);
10505  values[3] = PyTuple_GET_ITEM(__pyx_args, 3);
10506  values[2] = PyTuple_GET_ITEM(__pyx_args, 2);
10507  values[1] = PyTuple_GET_ITEM(__pyx_args, 1);
10508  values[0] = PyTuple_GET_ITEM(__pyx_args, 0);
10509  break;
10510  default: goto __pyx_L5_argtuple_error;
10511  }
10512  }
10513  __pyx_v_self = values[0];
10514  __pyx_v_uDict = values[1];
10515  __pyx_v_phiDict = values[2];
10516  __pyx_v_testSpaceDict = values[3];
10517  __pyx_v_matType = values[4];
10518  __pyx_v_dofBoundaryConditionsDict = values[5];
10519  __pyx_v_dofBoundaryConditionsSetterDict = values[6];
10520  __pyx_v_coefficients = values[7];
10521  __pyx_v_elementQuadrature = values[8];
10522  __pyx_v_elementBoundaryQuadrature = values[9];
10523  __pyx_v_fluxBoundaryConditionsDict = values[10];
10524  __pyx_v_advectiveFluxBoundaryConditionsSetterDict = values[11];
10525  __pyx_v_diffusiveFluxBoundaryConditionsSetterDictDict = values[12];
10526  __pyx_v_stressTraceBoundaryConditionsSetterDict = values[13];
10527  __pyx_v_stabilization = values[14];
10528  __pyx_v_shockCapturing = values[15];
10529  __pyx_v_conservativeFluxDict = values[16];
10530  __pyx_v_numericalFluxType = values[17];
10531  __pyx_v_TimeIntegrationClass = values[18];
10532  __pyx_v_massLumping = values[19];
10533  __pyx_v_reactionLumping = values[20];
10534  __pyx_v_options = values[21];
10535  __pyx_v_name = values[22];
10536  __pyx_v_reuse_trial_and_test_quadrature = values[23];
10537  __pyx_v_sd = values[24];
10538  __pyx_v_movingDomain = values[25];
10539  }
10540  goto __pyx_L4_argument_unpacking_done;
10541  __pyx_L5_argtuple_error:;
10542  __Pyx_RaiseArgtupleInvalid("__init__", 0, 10, 26, PyTuple_GET_SIZE(__pyx_args)); __PYX_ERR(0, 571, __pyx_L3_error)
10543  __pyx_L3_error:;
10544  __Pyx_AddTraceback("ADR.LevelModel.__init__", __pyx_clineno, __pyx_lineno, __pyx_filename);
10545  __Pyx_RefNannyFinishContext();
10546  return NULL;
10547  __pyx_L4_argument_unpacking_done:;
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10549 
10550  /* "ADR.pyx":571
10551  * """
10552  * nCalls=0
10553  * def __init__(self, # <<<<<<<<<<<<<<
10554  * uDict,
10555  * phiDict,
10556  */
10557 
10558  /* function exit code */
10559  __Pyx_RefNannyFinishContext();
10560  return __pyx_r;
10561 }
10562 
10563 static PyObject *__pyx_pf_3ADR_10LevelModel___init__(CYTHON_UNUSED PyObject *__pyx_self, PyObject *__pyx_v_self, PyObject *__pyx_v_uDict, PyObject *__pyx_v_phiDict, PyObject *__pyx_v_testSpaceDict, PyObject *__pyx_v_matType, PyObject *__pyx_v_dofBoundaryConditionsDict, PyObject *__pyx_v_dofBoundaryConditionsSetterDict, PyObject *__pyx_v_coefficients, PyObject *__pyx_v_elementQuadrature, PyObject *__pyx_v_elementBoundaryQuadrature, PyObject *__pyx_v_fluxBoundaryConditionsDict, PyObject *__pyx_v_advectiveFluxBoundaryConditionsSetterDict, PyObject *__pyx_v_diffusiveFluxBoundaryConditionsSetterDictDict, CYTHON_UNUSED PyObject *__pyx_v_stressTraceBoundaryConditionsSetterDict, PyObject *__pyx_v_stabilization, PyObject *__pyx_v_shockCapturing, PyObject *__pyx_v_conservativeFluxDict, PyObject *__pyx_v_numericalFluxType, PyObject *__pyx_v_TimeIntegrationClass, PyObject *__pyx_v_massLumping, PyObject *__pyx_v_reactionLumping, PyObject *__pyx_v_options, PyObject *__pyx_v_name, PyObject *__pyx_v_reuse_trial_and_test_quadrature, PyObject *__pyx_v_sd, PyObject *__pyx_v_movingDomain) {
10564  PyObject *__pyx_v_Comm = NULL;
10565  PyObject *__pyx_v_ci = NULL;
10566  PyObject *__pyx_v_flag = NULL;
10567  PyObject *__pyx_v_diffusionDict = NULL;
10568  PyObject *__pyx_v_elementQuadratureDict = NULL;
10569  int __pyx_v_elemQuadIsDict;
10570  PyObject *__pyx_v_I = NULL;
10571  PyObject *__pyx_v_elementBoundaryQuadratureDict = NULL;
10572  PyObject *__pyx_v_cj = NULL;
10573  PyObject *__pyx_v_ebNE = NULL;
10574  PyObject *__pyx_v_ebN = NULL;
10575  PyObject *__pyx_v_eN_global = NULL;
10576  PyObject *__pyx_v_ebN_element = NULL;
10577  PyObject *__pyx_v_i = NULL;
10578  PyObject *__pyx_v_nI = NULL;
10579  PyObject *__pyx_v_n = NULL;
10580  PyObject *__pyx_v_comm = NULL;
10581  PyObject *__pyx_v_k = NULL;
10582  PyObject *__pyx_v_PostProcessingTools = NULL;
10583  PyObject *__pyx_v_Archiver = NULL;
10584  PyObject *__pyx_v_fbcObject = NULL;
10585  PyObject *__pyx_v_t = NULL;
10586  PyObject *__pyx_v_g = NULL;
10587  PyObject *__pyx_v_ck = NULL;
10588  PyObject *__pyx_v_diffusiveFluxBoundaryConditionsDict = NULL;
10589  long __pyx_v_compKernelFlag;
10590  PyObject *__pyx_v_u_j = NULL;
10591  PyObject *__pyx_v_phi_k = NULL;
10592  PyObject *__pyx_v_femSpace = NULL;
10593  PyObject *__pyx_v_dc = NULL;
10594  PyObject *__pyx_r = NULL;
10595  __Pyx_RefNannyDeclarations
10596  PyObject *__pyx_t_1 = NULL;
10597  PyObject *__pyx_t_2 = NULL;
10598  int __pyx_t_3;
10599  Py_ssize_t __pyx_t_4;
10600  PyObject *(*__pyx_t_5)(PyObject *);
10601  PyObject *__pyx_t_6 = NULL;
10602  PyObject *__pyx_t_7 = NULL;
10603  PyObject *__pyx_t_8 = NULL;
10604  int __pyx_t_9;
10605  Py_ssize_t __pyx_t_10;
10606  PyObject *(*__pyx_t_11)(PyObject *);
10607  Py_ssize_t __pyx_t_12;
10608  PyObject *(*__pyx_t_13)(PyObject *);
10609  int __pyx_t_14;
10610  PyObject *__pyx_t_15 = NULL;
10611  PyObject *(*__pyx_t_16)(PyObject *);
10612  int __pyx_t_17;
10613  int __pyx_t_18;
10614  Py_ssize_t __pyx_t_19;
10615  int __pyx_t_20;
10616  PyObject *__pyx_t_21 = NULL;
10617  PyObject *__pyx_t_22 = NULL;
10618  Py_ssize_t __pyx_t_23;
10619  Py_ssize_t __pyx_t_24;
10620  int __pyx_t_25;
10621  PyObject *__pyx_t_26 = NULL;
10622  __Pyx_RefNannySetupContext("__init__", 0);
10623 
10624  /* "ADR.pyx":597
10625  * sd = True,
10626  * movingDomain=False):#,
10627  * from proteus import Comm # <<<<<<<<<<<<<<
10628  * #
10629  * #set the objects describing the method and boundary conditions
10630  */
10631  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 597, __pyx_L1_error)
10632  __Pyx_GOTREF(__pyx_t_1);
10633  __Pyx_INCREF(__pyx_n_s_Comm);
10634  __Pyx_GIVEREF(__pyx_n_s_Comm);
10635  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_Comm);
10636  __pyx_t_2 = __Pyx_Import(__pyx_n_s_proteus, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 597, __pyx_L1_error)
10637  __Pyx_GOTREF(__pyx_t_2);
10638  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10639  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_Comm); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 597, __pyx_L1_error)
10640  __Pyx_GOTREF(__pyx_t_1);
10641  __Pyx_INCREF(__pyx_t_1);
10642  __pyx_v_Comm = __pyx_t_1;
10643  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10644  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10645 
10646  /* "ADR.pyx":601
10647  * #set the objects describing the method and boundary conditions
10648  * #
10649  * self.movingDomain=movingDomain # <<<<<<<<<<<<<<
10650  * self.tLast_mesh=None
10651  * #
10652  */
10653  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_movingDomain, __pyx_v_movingDomain) < 0) __PYX_ERR(0, 601, __pyx_L1_error)
10654 
10655  /* "ADR.pyx":602
10656  * #
10657  * self.movingDomain=movingDomain
10658  * self.tLast_mesh=None # <<<<<<<<<<<<<<
10659  * #
10660  * self.name=name
10661  */
10662  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_tLast_mesh, Py_None) < 0) __PYX_ERR(0, 602, __pyx_L1_error)
10663 
10664  /* "ADR.pyx":604
10665  * self.tLast_mesh=None
10666  * #
10667  * self.name=name # <<<<<<<<<<<<<<
10668  * self.sd=sd
10669  * self.Hess=False
10670  */
10671  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_name, __pyx_v_name) < 0) __PYX_ERR(0, 604, __pyx_L1_error)
10672 
10673  /* "ADR.pyx":605
10674  * #
10675  * self.name=name
10676  * self.sd=sd # <<<<<<<<<<<<<<
10677  * self.Hess=False
10678  * self.lowmem=True
10679  */
10680  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_sd, __pyx_v_sd) < 0) __PYX_ERR(0, 605, __pyx_L1_error)
10681 
10682  /* "ADR.pyx":606
10683  * self.name=name
10684  * self.sd=sd
10685  * self.Hess=False # <<<<<<<<<<<<<<
10686  * self.lowmem=True
10687  * self.timeTerm=True#allow turning off the time derivative
10688  */
10689  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_Hess, Py_False) < 0) __PYX_ERR(0, 606, __pyx_L1_error)
10690 
10691  /* "ADR.pyx":607
10692  * self.sd=sd
10693  * self.Hess=False
10694  * self.lowmem=True # <<<<<<<<<<<<<<
10695  * self.timeTerm=True#allow turning off the time derivative
10696  * #self.lowmem=False
10697  */
10698  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_lowmem, Py_True) < 0) __PYX_ERR(0, 607, __pyx_L1_error)
10699 
10700  /* "ADR.pyx":608
10701  * self.Hess=False
10702  * self.lowmem=True
10703  * self.timeTerm=True#allow turning off the time derivative # <<<<<<<<<<<<<<
10704  * #self.lowmem=False
10705  * self.testIsTrial=True
10706  */
10707  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_timeTerm, Py_True) < 0) __PYX_ERR(0, 608, __pyx_L1_error)
10708 
10709  /* "ADR.pyx":610
10710  * self.timeTerm=True#allow turning off the time derivative
10711  * #self.lowmem=False
10712  * self.testIsTrial=True # <<<<<<<<<<<<<<
10713  * self.phiTrialIsTrial=True
10714  * self.u = uDict
10715  */
10716  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_testIsTrial, Py_True) < 0) __PYX_ERR(0, 610, __pyx_L1_error)
10717 
10718  /* "ADR.pyx":611
10719  * #self.lowmem=False
10720  * self.testIsTrial=True
10721  * self.phiTrialIsTrial=True # <<<<<<<<<<<<<<
10722  * self.u = uDict
10723  * self.ua = {}#analytical solutions
10724  */
10725  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_phiTrialIsTrial, Py_True) < 0) __PYX_ERR(0, 611, __pyx_L1_error)
10726 
10727  /* "ADR.pyx":612
10728  * self.testIsTrial=True
10729  * self.phiTrialIsTrial=True
10730  * self.u = uDict # <<<<<<<<<<<<<<
10731  * self.ua = {}#analytical solutions
10732  * self.phi = phiDict
10733  */
10734  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_u, __pyx_v_uDict) < 0) __PYX_ERR(0, 612, __pyx_L1_error)
10735 
10736  /* "ADR.pyx":613
10737  * self.phiTrialIsTrial=True
10738  * self.u = uDict
10739  * self.ua = {}#analytical solutions # <<<<<<<<<<<<<<
10740  * self.phi = phiDict
10741  * self.dphi={}
10742  */
10743  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 613, __pyx_L1_error)
10744  __Pyx_GOTREF(__pyx_t_2);
10745  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_ua, __pyx_t_2) < 0) __PYX_ERR(0, 613, __pyx_L1_error)
10746  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10747 
10748  /* "ADR.pyx":614
10749  * self.u = uDict
10750  * self.ua = {}#analytical solutions
10751  * self.phi = phiDict # <<<<<<<<<<<<<<
10752  * self.dphi={}
10753  * self.matType = matType
10754  */
10755  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_phi, __pyx_v_phiDict) < 0) __PYX_ERR(0, 614, __pyx_L1_error)
10756 
10757  /* "ADR.pyx":615
10758  * self.ua = {}#analytical solutions
10759  * self.phi = phiDict
10760  * self.dphi={} # <<<<<<<<<<<<<<
10761  * self.matType = matType
10762  * #mwf try to reuse test and trial information across components if spaces are the same
10763  */
10764  __pyx_t_2 = PyDict_New(); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 615, __pyx_L1_error)
10765  __Pyx_GOTREF(__pyx_t_2);
10766  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_dphi, __pyx_t_2) < 0) __PYX_ERR(0, 615, __pyx_L1_error)
10767  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10768 
10769  /* "ADR.pyx":616
10770  * self.phi = phiDict
10771  * self.dphi={}
10772  * self.matType = matType # <<<<<<<<<<<<<<
10773  * #mwf try to reuse test and trial information across components if spaces are the same
10774  * self.reuse_test_trial_quadrature = reuse_trial_and_test_quadrature#True#False
10775  */
10776  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_matType, __pyx_v_matType) < 0) __PYX_ERR(0, 616, __pyx_L1_error)
10777 
10778  /* "ADR.pyx":618
10779  * self.matType = matType
10780  * #mwf try to reuse test and trial information across components if spaces are the same
10781  * self.reuse_test_trial_quadrature = reuse_trial_and_test_quadrature#True#False # <<<<<<<<<<<<<<
10782  * if self.reuse_test_trial_quadrature:
10783  * for ci in range(1,coefficients.nc):
10784  */
10785  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_reuse_test_trial_quadrature, __pyx_v_reuse_trial_and_test_quadrature) < 0) __PYX_ERR(0, 618, __pyx_L1_error)
10786 
10787  /* "ADR.pyx":619
10788  * #mwf try to reuse test and trial information across components if spaces are the same
10789  * self.reuse_test_trial_quadrature = reuse_trial_and_test_quadrature#True#False
10790  * if self.reuse_test_trial_quadrature: # <<<<<<<<<<<<<<
10791  * for ci in range(1,coefficients.nc):
10792  * assert self.u[ci].femSpace.__class__.__name__ == self.u[0].femSpace.__class__.__name__, "to reuse_test_trial_quad all femSpaces must be the same!"
10793  */
10794  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_reuse_test_trial_quadrature); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 619, __pyx_L1_error)
10795  __Pyx_GOTREF(__pyx_t_2);
10796  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_2); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(0, 619, __pyx_L1_error)
10797  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10798  if (__pyx_t_3) {
10799 
10800  /* "ADR.pyx":620
10801  * self.reuse_test_trial_quadrature = reuse_trial_and_test_quadrature#True#False
10802  * if self.reuse_test_trial_quadrature:
10803  * for ci in range(1,coefficients.nc): # <<<<<<<<<<<<<<
10804  * assert self.u[ci].femSpace.__class__.__name__ == self.u[0].femSpace.__class__.__name__, "to reuse_test_trial_quad all femSpaces must be the same!"
10805  * ## Simplicial Mesh
10806  */
10807  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_coefficients, __pyx_n_s_nc); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 620, __pyx_L1_error)
10808  __Pyx_GOTREF(__pyx_t_2);
10809  __pyx_t_1 = PyTuple_New(2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 620, __pyx_L1_error)
10810  __Pyx_GOTREF(__pyx_t_1);
10811  __Pyx_INCREF(__pyx_int_1);
10812  __Pyx_GIVEREF(__pyx_int_1);
10813  PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_int_1);
10814  __Pyx_GIVEREF(__pyx_t_2);
10815  PyTuple_SET_ITEM(__pyx_t_1, 1, __pyx_t_2);
10816  __pyx_t_2 = 0;
10817  __pyx_t_2 = __Pyx_PyObject_Call(__pyx_builtin_range, __pyx_t_1, NULL); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 620, __pyx_L1_error)
10818  __Pyx_GOTREF(__pyx_t_2);
10819  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10820  if (likely(PyList_CheckExact(__pyx_t_2)) || PyTuple_CheckExact(__pyx_t_2)) {
10821  __pyx_t_1 = __pyx_t_2; __Pyx_INCREF(__pyx_t_1); __pyx_t_4 = 0;
10822  __pyx_t_5 = NULL;
10823  } else {
10824  __pyx_t_4 = -1; __pyx_t_1 = PyObject_GetIter(__pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 620, __pyx_L1_error)
10825  __Pyx_GOTREF(__pyx_t_1);
10826  __pyx_t_5 = Py_TYPE(__pyx_t_1)->tp_iternext; if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 620, __pyx_L1_error)
10827  }
10828  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10829  for (;;) {
10830  if (likely(!__pyx_t_5)) {
10831  if (likely(PyList_CheckExact(__pyx_t_1))) {
10832  if (__pyx_t_4 >= PyList_GET_SIZE(__pyx_t_1)) break;
10833  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
10834  __pyx_t_2 = PyList_GET_ITEM(__pyx_t_1, __pyx_t_4); __Pyx_INCREF(__pyx_t_2); __pyx_t_4++; if (unlikely(0 < 0)) __PYX_ERR(0, 620, __pyx_L1_error)
10835  #else
10836  __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 620, __pyx_L1_error)
10837  __Pyx_GOTREF(__pyx_t_2);
10838  #endif
10839  } else {
10840  if (__pyx_t_4 >= PyTuple_GET_SIZE(__pyx_t_1)) break;
10841  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
10842  __pyx_t_2 = PyTuple_GET_ITEM(__pyx_t_1, __pyx_t_4); __Pyx_INCREF(__pyx_t_2); __pyx_t_4++; if (unlikely(0 < 0)) __PYX_ERR(0, 620, __pyx_L1_error)
10843  #else
10844  __pyx_t_2 = PySequence_ITEM(__pyx_t_1, __pyx_t_4); __pyx_t_4++; if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 620, __pyx_L1_error)
10845  __Pyx_GOTREF(__pyx_t_2);
10846  #endif
10847  }
10848  } else {
10849  __pyx_t_2 = __pyx_t_5(__pyx_t_1);
10850  if (unlikely(!__pyx_t_2)) {
10851  PyObject* exc_type = PyErr_Occurred();
10852  if (exc_type) {
10853  if (likely(exc_type == PyExc_StopIteration || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration))) PyErr_Clear();
10854  else __PYX_ERR(0, 620, __pyx_L1_error)
10855  }
10856  break;
10857  }
10858  __Pyx_GOTREF(__pyx_t_2);
10859  }
10860  __Pyx_XDECREF_SET(__pyx_v_ci, __pyx_t_2);
10861  __pyx_t_2 = 0;
10862 
10863  /* "ADR.pyx":621
10864  * if self.reuse_test_trial_quadrature:
10865  * for ci in range(1,coefficients.nc):
10866  * assert self.u[ci].femSpace.__class__.__name__ == self.u[0].femSpace.__class__.__name__, "to reuse_test_trial_quad all femSpaces must be the same!" # <<<<<<<<<<<<<<
10867  * ## Simplicial Mesh
10868  * self.mesh = self.u[0].femSpace.mesh #assume the same mesh for all components for now
10869  */
10870  #ifndef CYTHON_WITHOUT_ASSERTIONS
10871  if (unlikely(!Py_OptimizeFlag)) {
10872  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 621, __pyx_L1_error)
10873  __Pyx_GOTREF(__pyx_t_2);
10874  __pyx_t_6 = PyObject_GetItem(__pyx_t_2, __pyx_v_ci); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 621, __pyx_L1_error)
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10876  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10877  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_6, __pyx_n_s_femSpace); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 621, __pyx_L1_error)
10878  __Pyx_GOTREF(__pyx_t_2);
10879  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
10880  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_class); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 621, __pyx_L1_error)
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10882  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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10884  __Pyx_GOTREF(__pyx_t_2);
10885  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
10886  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 621, __pyx_L1_error)
10887  __Pyx_GOTREF(__pyx_t_6);
10888  __pyx_t_7 = __Pyx_GetItemInt(__pyx_t_6, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 621, __pyx_L1_error)
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10890  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
10891  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_femSpace); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 621, __pyx_L1_error)
10892  __Pyx_GOTREF(__pyx_t_6);
10893  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
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10895  __Pyx_GOTREF(__pyx_t_7);
10896  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
10897  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_t_7, __pyx_n_s_name_2); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 621, __pyx_L1_error)
10898  __Pyx_GOTREF(__pyx_t_6);
10899  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
10900  __pyx_t_7 = PyObject_RichCompare(__pyx_t_2, __pyx_t_6, Py_EQ); __Pyx_XGOTREF(__pyx_t_7); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 621, __pyx_L1_error)
10901  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
10902  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
10903  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_7); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(0, 621, __pyx_L1_error)
10904  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
10905  if (unlikely(!__pyx_t_3)) {
10906  PyErr_SetObject(PyExc_AssertionError, __pyx_kp_s_to_reuse_test_trial_quad_all_fem);
10907  __PYX_ERR(0, 621, __pyx_L1_error)
10908  }
10909  }
10910  #endif
10911 
10912  /* "ADR.pyx":620
10913  * self.reuse_test_trial_quadrature = reuse_trial_and_test_quadrature#True#False
10914  * if self.reuse_test_trial_quadrature:
10915  * for ci in range(1,coefficients.nc): # <<<<<<<<<<<<<<
10916  * assert self.u[ci].femSpace.__class__.__name__ == self.u[0].femSpace.__class__.__name__, "to reuse_test_trial_quad all femSpaces must be the same!"
10917  * ## Simplicial Mesh
10918  */
10919  }
10920  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
10921 
10922  /* "ADR.pyx":619
10923  * #mwf try to reuse test and trial information across components if spaces are the same
10924  * self.reuse_test_trial_quadrature = reuse_trial_and_test_quadrature#True#False
10925  * if self.reuse_test_trial_quadrature: # <<<<<<<<<<<<<<
10926  * for ci in range(1,coefficients.nc):
10927  * assert self.u[ci].femSpace.__class__.__name__ == self.u[0].femSpace.__class__.__name__, "to reuse_test_trial_quad all femSpaces must be the same!"
10928  */
10929  }
10930 
10931  /* "ADR.pyx":623
10932  * assert self.u[ci].femSpace.__class__.__name__ == self.u[0].femSpace.__class__.__name__, "to reuse_test_trial_quad all femSpaces must be the same!"
10933  * ## Simplicial Mesh
10934  * self.mesh = self.u[0].femSpace.mesh #assume the same mesh for all components for now # <<<<<<<<<<<<<<
10935  * self.testSpace = testSpaceDict
10936  * self.dirichletConditions = dofBoundaryConditionsDict
10937  */
10938  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 623, __pyx_L1_error)
10939  __Pyx_GOTREF(__pyx_t_1);
10940  __pyx_t_7 = __Pyx_GetItemInt(__pyx_t_1, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_7)) __PYX_ERR(0, 623, __pyx_L1_error)
10941  __Pyx_GOTREF(__pyx_t_7);
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10944  __Pyx_GOTREF(__pyx_t_1);
10945  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
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10947  __Pyx_GOTREF(__pyx_t_7);
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10950  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
10951 
10952  /* "ADR.pyx":624
10953  * ## Simplicial Mesh
10954  * self.mesh = self.u[0].femSpace.mesh #assume the same mesh for all components for now
10955  * self.testSpace = testSpaceDict # <<<<<<<<<<<<<<
10956  * self.dirichletConditions = dofBoundaryConditionsDict
10957  * self.dirichletNodeSetList=None #explicit Dirichlet conditions for now, no Dirichlet BC constraints
10958  */
10959  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_testSpace, __pyx_v_testSpaceDict) < 0) __PYX_ERR(0, 624, __pyx_L1_error)
10960 
10961  /* "ADR.pyx":625
10962  * self.mesh = self.u[0].femSpace.mesh #assume the same mesh for all components for now
10963  * self.testSpace = testSpaceDict
10964  * self.dirichletConditions = dofBoundaryConditionsDict # <<<<<<<<<<<<<<
10965  * self.dirichletNodeSetList=None #explicit Dirichlet conditions for now, no Dirichlet BC constraints
10966  * self.coefficients = coefficients
10967  */
10968  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_dirichletConditions, __pyx_v_dofBoundaryConditionsDict) < 0) __PYX_ERR(0, 625, __pyx_L1_error)
10969 
10970  /* "ADR.pyx":626
10971  * self.testSpace = testSpaceDict
10972  * self.dirichletConditions = dofBoundaryConditionsDict
10973  * self.dirichletNodeSetList=None #explicit Dirichlet conditions for now, no Dirichlet BC constraints # <<<<<<<<<<<<<<
10974  * self.coefficients = coefficients
10975  * self.coefficients.initializeMesh(self.mesh)
10976  */
10977  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_dirichletNodeSetList, Py_None) < 0) __PYX_ERR(0, 626, __pyx_L1_error)
10978 
10979  /* "ADR.pyx":627
10980  * self.dirichletConditions = dofBoundaryConditionsDict
10981  * self.dirichletNodeSetList=None #explicit Dirichlet conditions for now, no Dirichlet BC constraints
10982  * self.coefficients = coefficients # <<<<<<<<<<<<<<
10983  * self.coefficients.initializeMesh(self.mesh)
10984  * self.nc = self.coefficients.nc
10985  */
10986  if (__Pyx_PyObject_SetAttrStr(__pyx_v_self, __pyx_n_s_coefficients, __pyx_v_coefficients) < 0) __PYX_ERR(0, 627, __pyx_L1_error)
10987 
10988  /* "ADR.pyx":628
10989  * self.dirichletNodeSetList=None #explicit Dirichlet conditions for now, no Dirichlet BC constraints
10990  * self.coefficients = coefficients
10991  * self.coefficients.initializeMesh(self.mesh) # <<<<<<<<<<<<<<
10992  * self.nc = self.coefficients.nc
10993  * self.stabilization = stabilization
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12331  * self.stabilizationIsNonlinear=True
12332  * #determine if we need element boundary storage
12333  */
12334  __pyx_t_9 = (__Pyx_PyString_Equals(__pyx_v_flag, __pyx_n_s_nonlinear, Py_EQ)); if (unlikely(__pyx_t_9 < 0)) __PYX_ERR(0, 664, __pyx_L1_error)
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12336 
12337  /* "ADR.pyx":665
12338  * for flag in coefficients.hamiltonian[ci].values():
12339  * if flag == 'nonlinear':
12340  * self.stabilizationIsNonlinear=True # <<<<<<<<<<<<<<
12341  * #determine if we need element boundary storage
12342  * self.elementBoundaryIntegrals = {}
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12345 
12346  /* "ADR.pyx":664
12347  * if coefficients.hamiltonian.has_key(ci):
12348  * for flag in coefficients.hamiltonian[ci].values():
12349  * if flag == 'nonlinear': # <<<<<<<<<<<<<<
12350  * self.stabilizationIsNonlinear=True
12351  * #determine if we need element boundary storage
12352  */
12353  }
12354 
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12356  * self.stabilizationIsNonlinear=True
12357  * if coefficients.hamiltonian.has_key(ci):
12358  * for flag in coefficients.hamiltonian[ci].values(): # <<<<<<<<<<<<<<
12359  * if flag == 'nonlinear':
12360  * self.stabilizationIsNonlinear=True
12361  */
12362  }
12363  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
12364 
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12368  * if coefficients.hamiltonian.has_key(ci): # <<<<<<<<<<<<<<
12369  * for flag in coefficients.hamiltonian[ci].values():
12370  * if flag == 'nonlinear':
12371  */
12372  }
12373 
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12375  * #cek come back
12376  * if self.stabilization is not None:
12377  * for ci in range(self.nc): # <<<<<<<<<<<<<<
12378  * if coefficients.mass.has_key(ci):
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12380  */
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12387  * if self.stabilization is not None: # <<<<<<<<<<<<<<
12388  * for ci in range(self.nc):
12389  * if coefficients.mass.has_key(ci):
12390  */
12391  }
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12394  * self.stabilizationIsNonlinear=True
12395  * #determine if we need element boundary storage
12396  * self.elementBoundaryIntegrals = {} # <<<<<<<<<<<<<<
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12405  /* "ADR.pyx":668
12406  * #determine if we need element boundary storage
12407  * self.elementBoundaryIntegrals = {}
12408  * for ci in range(self.nc): # <<<<<<<<<<<<<<
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12410  * (numericalFluxType is not None) or
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12466  * self.elementBoundaryIntegrals = {}
12467  * for ci in range(self.nc):
12468  * self.elementBoundaryIntegrals[ci] = ((self.conservativeFlux is not None) or # <<<<<<<<<<<<<<
12469  * (numericalFluxType is not None) or
12470  * (self.fluxBoundaryConditions[ci] == 'outFlow') or
12471  */
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12503  * self.elementBoundaryIntegrals[ci] = ((self.conservativeFlux is not None) or
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12527  * (numericalFluxType is not None) or
12528  * (self.fluxBoundaryConditions[ci] == 'outFlow') or
12529  * (self.fluxBoundaryConditions[ci] == 'mixedFlow') or # <<<<<<<<<<<<<<
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12551  * (self.fluxBoundaryConditions[ci] == 'outFlow') or
12552  * (self.fluxBoundaryConditions[ci] == 'mixedFlow') or
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12568 
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12570  * self.elementBoundaryIntegrals = {}
12571  * for ci in range(self.nc):
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12585  * for ci in range(self.nc): # <<<<<<<<<<<<<<
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12587  * (numericalFluxType is not None) or
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12594  * #
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12596  * self.nDOF_trial_element = [u_j.femSpace.max_nDOF_element for u_j in self.u.values()]
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12614  * #
12615  * self.nSpace_global = self.u[0].femSpace.nSpace_global #assume same space dim for all variables
12616  * self.nDOF_trial_element = [u_j.femSpace.max_nDOF_element for u_j in self.u.values()] # <<<<<<<<<<<<<<
12617  * self.nDOF_phi_trial_element = [phi_k.femSpace.max_nDOF_element for phi_k in self.phi.values()]
12618  * self.n_phi_ip_element = [phi_k.femSpace.referenceFiniteElement.interpolationConditions.nQuadraturePoints for phi_k in self.phi.values()]
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13238  * else:
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13311  /* "ADR.pyx":699
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13614  goto __pyx_L61;
13615  }
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13633  __pyx_L61:;
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13733  /* "ADR.pyx":715
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13736  * if elementQuadrature.has_key(('numDiff',ci,ci)): # <<<<<<<<<<<<<<
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13848 
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13868  __Pyx_GIVEREF(__pyx_v_ci);
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13883  goto __pyx_L66;
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14537  * for ci in self.coefficients.mass.keys():
14538  * elementQuadratureDict[('r',ci)] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
14539  * for I in self.coefficients.elementIntegralKeys: # <<<<<<<<<<<<<<
14540  * elementQuadratureDict[('stab',)+I[1:]] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
14541  * elementBoundaryQuadratureDict={}
14542  */
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14544  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
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14547  * for I in self.coefficients.elementIntegralKeys:
14548  * elementQuadratureDict[('stab',)+I[1:]] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
14549  * if reactionLumping: # <<<<<<<<<<<<<<
14550  * for ci in self.coefficients.mass.keys():
14551  * elementQuadratureDict[('r',ci)] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
14552  */
14553  }
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14556  * for I in self.coefficients.elementIntegralKeys:
14557  * elementQuadratureDict[('stab',)+I[1:]] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
14558  * elementBoundaryQuadratureDict={} # <<<<<<<<<<<<<<
14559  * if isinstance(elementBoundaryQuadrature,dict): #set terms manually
14560  * for I in self.coefficients.elementBoundaryIntegralKeys:
14561  */
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14565  __pyx_t_7 = 0;
14566 
14567  /* "ADR.pyx":732
14568  * elementQuadratureDict[('stab',)+I[1:]] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
14569  * elementBoundaryQuadratureDict={}
14570  * if isinstance(elementBoundaryQuadrature,dict): #set terms manually # <<<<<<<<<<<<<<
14571  * for I in self.coefficients.elementBoundaryIntegralKeys:
14572  * if elementBoundaryQuadrature.has_key(I):
14573  */
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14577 
14578  /* "ADR.pyx":733
14579  * elementBoundaryQuadratureDict={}
14580  * if isinstance(elementBoundaryQuadrature,dict): #set terms manually
14581  * for I in self.coefficients.elementBoundaryIntegralKeys: # <<<<<<<<<<<<<<
14582  * if elementBoundaryQuadrature.has_key(I):
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14584  */
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14598  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
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14602  if (__pyx_t_4 >= PyList_GET_SIZE(__pyx_t_7)) break;
14603  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
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14612  __pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_7, __pyx_t_4); __Pyx_INCREF(__pyx_t_6); __pyx_t_4++; if (unlikely(0 < 0)) __PYX_ERR(0, 733, __pyx_L1_error)
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14634  * if isinstance(elementBoundaryQuadrature,dict): #set terms manually
14635  * for I in self.coefficients.elementBoundaryIntegralKeys:
14636  * if elementBoundaryQuadrature.has_key(I): # <<<<<<<<<<<<<<
14637  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature[I]
14638  * else:
14639  */
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14646  PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_15);
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14681  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
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14685  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(0, 734, __pyx_L1_error)
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14687  if (__pyx_t_3) {
14688 
14689  /* "ADR.pyx":735
14690  * for I in self.coefficients.elementBoundaryIntegralKeys:
14691  * if elementBoundaryQuadrature.has_key(I):
14692  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature[I] # <<<<<<<<<<<<<<
14693  * else:
14694  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature['default']
14695  */
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14701  /* "ADR.pyx":734
14702  * if isinstance(elementBoundaryQuadrature,dict): #set terms manually
14703  * for I in self.coefficients.elementBoundaryIntegralKeys:
14704  * if elementBoundaryQuadrature.has_key(I): # <<<<<<<<<<<<<<
14705  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature[I]
14706  * else:
14707  */
14708  goto __pyx_L81;
14709  }
14710 
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14712  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature[I]
14713  * else:
14714  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature['default'] # <<<<<<<<<<<<<<
14715  * else:
14716  * for I in self.coefficients.elementBoundaryIntegralKeys:
14717  */
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14725 
14726  /* "ADR.pyx":733
14727  * elementBoundaryQuadratureDict={}
14728  * if isinstance(elementBoundaryQuadrature,dict): #set terms manually
14729  * for I in self.coefficients.elementBoundaryIntegralKeys: # <<<<<<<<<<<<<<
14730  * if elementBoundaryQuadrature.has_key(I):
14731  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature[I]
14732  */
14733  }
14734  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
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14736  /* "ADR.pyx":732
14737  * elementQuadratureDict[('stab',)+I[1:]] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
14738  * elementBoundaryQuadratureDict={}
14739  * if isinstance(elementBoundaryQuadrature,dict): #set terms manually # <<<<<<<<<<<<<<
14740  * for I in self.coefficients.elementBoundaryIntegralKeys:
14741  * if elementBoundaryQuadrature.has_key(I):
14742  */
14743  goto __pyx_L78;
14744  }
14745 
14746  /* "ADR.pyx":739
14747  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature['default']
14748  * else:
14749  * for I in self.coefficients.elementBoundaryIntegralKeys: # <<<<<<<<<<<<<<
14750  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature
14751  * #
14752  */
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14760  __pyx_t_7 = __pyx_t_6; __Pyx_INCREF(__pyx_t_7); __pyx_t_4 = 0;
14761  __pyx_t_5 = NULL;
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14771  if (__pyx_t_4 >= PyList_GET_SIZE(__pyx_t_7)) break;
14772  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
14773  __pyx_t_6 = PyList_GET_ITEM(__pyx_t_7, __pyx_t_4); __Pyx_INCREF(__pyx_t_6); __pyx_t_4++; if (unlikely(0 < 0)) __PYX_ERR(0, 739, __pyx_L1_error)
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14780  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
14781  __pyx_t_6 = PyTuple_GET_ITEM(__pyx_t_7, __pyx_t_4); __Pyx_INCREF(__pyx_t_6); __pyx_t_4++; if (unlikely(0 < 0)) __PYX_ERR(0, 739, __pyx_L1_error)
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14803  * else:
14804  * for I in self.coefficients.elementBoundaryIntegralKeys:
14805  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature # <<<<<<<<<<<<<<
14806  * #
14807  * # find the union of all element quadrature points and
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14810 
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14812  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature['default']
14813  * else:
14814  * for I in self.coefficients.elementBoundaryIntegralKeys: # <<<<<<<<<<<<<<
14815  * elementBoundaryQuadratureDict[I] = elementBoundaryQuadrature
14816  * #
14817  */
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14819  __Pyx_DECREF(__pyx_t_7); __pyx_t_7 = 0;
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14821  __pyx_L78:;
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14824  * #mwf include tag telling me which indices are which quadrature rule?
14825  * (self.elementQuadraturePoints,self.elementQuadratureWeights,
14826  * self.elementQuadratureRuleIndeces) = Quadrature.buildUnion(elementQuadratureDict) # <<<<<<<<<<<<<<
14827  * self.nQuadraturePoints_element = self.elementQuadraturePoints.shape[0]
14828  * self.nQuadraturePoints_global = self.nQuadraturePoints_element*self.mesh.nElements_global
14829  */
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14936  /* "ADR.pyx":746
14937  * # weight at each point in the union
14938  * #mwf include tag telling me which indices are which quadrature rule?
14939  * (self.elementQuadraturePoints,self.elementQuadratureWeights, # <<<<<<<<<<<<<<
14940  * self.elementQuadratureRuleIndeces) = Quadrature.buildUnion(elementQuadratureDict)
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14949  * #mwf include tag telling me which indices are which quadrature rule?
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14951  * self.elementQuadratureRuleIndeces) = Quadrature.buildUnion(elementQuadratureDict) # <<<<<<<<<<<<<<
14952  * self.nQuadraturePoints_element = self.elementQuadraturePoints.shape[0]
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14960  * self.elementQuadratureRuleIndeces) = Quadrature.buildUnion(elementQuadratureDict)
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14978  * self.nQuadraturePoints_element = self.elementQuadraturePoints.shape[0]
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14980  * #
14981  * #Repeat the same thing for the element boundary quadrature
14982  */
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14998  * (self.elementBoundaryQuadraturePoints,
14999  * self.elementBoundaryQuadratureWeights,
15000  * self.elementBoundaryQuadratureRuleIndeces) = Quadrature.buildUnion(elementBoundaryQuadratureDict) # <<<<<<<<<<<<<<
15001  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0]
15002  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global*
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15042  __Pyx_GIVEREF(__pyx_t_8); PyTuple_SET_ITEM(__pyx_t_15, 0, __pyx_t_8); __pyx_t_8 = NULL;
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15045  PyTuple_SET_ITEM(__pyx_t_15, 0+1, __pyx_v_elementBoundaryQuadratureDict);
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15055  Py_ssize_t size = Py_SIZE(sequence);
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15111  * #Repeat the same thing for the element boundary quadrature
15112  * #
15113  * (self.elementBoundaryQuadraturePoints, # <<<<<<<<<<<<<<
15114  * self.elementBoundaryQuadratureWeights,
15115  * self.elementBoundaryQuadratureRuleIndeces) = Quadrature.buildUnion(elementBoundaryQuadratureDict)
15116  */
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15121  * #
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15123  * self.elementBoundaryQuadratureWeights, # <<<<<<<<<<<<<<
15124  * self.elementBoundaryQuadratureRuleIndeces) = Quadrature.buildUnion(elementBoundaryQuadratureDict)
15125  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0]
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15131  * (self.elementBoundaryQuadraturePoints,
15132  * self.elementBoundaryQuadratureWeights,
15133  * self.elementBoundaryQuadratureRuleIndeces) = Quadrature.buildUnion(elementBoundaryQuadratureDict) # <<<<<<<<<<<<<<
15134  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0]
15135  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global*
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15141  * self.elementBoundaryQuadratureWeights,
15142  * self.elementBoundaryQuadratureRuleIndeces) = Quadrature.buildUnion(elementBoundaryQuadratureDict)
15143  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0] # <<<<<<<<<<<<<<
15144  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global*
15145  * self.mesh.nElementBoundaries_element*
15146  */
15147  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_elementBoundaryQuadraturePoints); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 756, __pyx_L1_error)
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15151  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
15152  __pyx_t_6 = __Pyx_GetItemInt(__pyx_t_8, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 756, __pyx_L1_error)
15153  __Pyx_GOTREF(__pyx_t_6);
15154  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
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15156  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
15157 
15158  /* "ADR.pyx":757
15159  * self.elementBoundaryQuadratureRuleIndeces) = Quadrature.buildUnion(elementBoundaryQuadratureDict)
15160  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0]
15161  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global* # <<<<<<<<<<<<<<
15162  * self.mesh.nElementBoundaries_element*
15163  * self.nElementBoundaryQuadraturePoints_elementBoundary)
15164  */
15165  __pyx_t_6 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_mesh); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 757, __pyx_L1_error)
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15168  __Pyx_GOTREF(__pyx_t_8);
15169  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
15170 
15171  /* "ADR.pyx":758
15172  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0]
15173  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global*
15174  * self.mesh.nElementBoundaries_element* # <<<<<<<<<<<<<<
15175  * self.nElementBoundaryQuadraturePoints_elementBoundary)
15176  * if type(self.u[0].femSpace) == C0_AffineLinearOnSimplexWithNodalBasis:
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15182  __Pyx_DECREF(__pyx_t_6); __pyx_t_6 = 0;
15183 
15184  /* "ADR.pyx":757
15185  * self.elementBoundaryQuadratureRuleIndeces) = Quadrature.buildUnion(elementBoundaryQuadratureDict)
15186  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0]
15187  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global* # <<<<<<<<<<<<<<
15188  * self.mesh.nElementBoundaries_element*
15189  * self.nElementBoundaryQuadraturePoints_elementBoundary)
15190  */
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15193  __Pyx_DECREF(__pyx_t_8); __pyx_t_8 = 0;
15194  __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
15195 
15196  /* "ADR.pyx":759
15197  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global*
15198  * self.mesh.nElementBoundaries_element*
15199  * self.nElementBoundaryQuadraturePoints_elementBoundary) # <<<<<<<<<<<<<<
15200  * if type(self.u[0].femSpace) == C0_AffineLinearOnSimplexWithNodalBasis:
15201  * if self.nSpace_global == 3:
15202  */
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15206  /* "ADR.pyx":758
15207  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0]
15208  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global*
15209  * self.mesh.nElementBoundaries_element* # <<<<<<<<<<<<<<
15210  * self.nElementBoundaryQuadraturePoints_elementBoundary)
15211  * if type(self.u[0].femSpace) == C0_AffineLinearOnSimplexWithNodalBasis:
15212  */
15213  __pyx_t_8 = PyNumber_Multiply(__pyx_t_6, __pyx_t_15); if (unlikely(!__pyx_t_8)) __PYX_ERR(0, 758, __pyx_L1_error)
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15216  __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
15217 
15218  /* "ADR.pyx":757
15219  * self.elementBoundaryQuadratureRuleIndeces) = Quadrature.buildUnion(elementBoundaryQuadratureDict)
15220  * self.nElementBoundaryQuadraturePoints_elementBoundary = self.elementBoundaryQuadraturePoints.shape[0]
15221  * self.nElementBoundaryQuadraturePoints_global = (self.mesh.nElements_global* # <<<<<<<<<<<<<<
15222  * self.mesh.nElementBoundaries_element*
15223  * self.nElementBoundaryQuadraturePoints_elementBoundary)
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15228  /* "ADR.pyx":760
15229  * self.mesh.nElementBoundaries_element*
15230  * self.nElementBoundaryQuadraturePoints_elementBoundary)
15231  * if type(self.u[0].femSpace) == C0_AffineLinearOnSimplexWithNodalBasis: # <<<<<<<<<<<<<<
15232  * if self.nSpace_global == 3:
15233  * assert(self.nQuadraturePoints_element == 5)
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15253  * self.nElementBoundaryQuadraturePoints_elementBoundary)
15254  * if type(self.u[0].femSpace) == C0_AffineLinearOnSimplexWithNodalBasis:
15255  * if self.nSpace_global == 3: # <<<<<<<<<<<<<<
15256  * assert(self.nQuadraturePoints_element == 5)
15257  * elif self.nSpace_global == 2:
15258  */
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15264  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_15); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(0, 761, __pyx_L1_error)
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15266  if (__pyx_t_3) {
15267 
15268  /* "ADR.pyx":762
15269  * if type(self.u[0].femSpace) == C0_AffineLinearOnSimplexWithNodalBasis:
15270  * if self.nSpace_global == 3:
15271  * assert(self.nQuadraturePoints_element == 5) # <<<<<<<<<<<<<<
15272  * elif self.nSpace_global == 2:
15273  * assert(self.nQuadraturePoints_element == 6)
15274  */
15275  #ifndef CYTHON_WITHOUT_ASSERTIONS
15276  if (unlikely(!Py_OptimizeFlag)) {
15277  __pyx_t_15 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_nQuadraturePoints_element); if (unlikely(!__pyx_t_15)) __PYX_ERR(0, 762, __pyx_L1_error)
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15292  * self.nElementBoundaryQuadraturePoints_elementBoundary)
15293  * if type(self.u[0].femSpace) == C0_AffineLinearOnSimplexWithNodalBasis:
15294  * if self.nSpace_global == 3: # <<<<<<<<<<<<<<
15295  * assert(self.nQuadraturePoints_element == 5)
15296  * elif self.nSpace_global == 2:
15297  */
15298  goto __pyx_L89;
15299  }
15300 
15301  /* "ADR.pyx":763
15302  * if self.nSpace_global == 3:
15303  * assert(self.nQuadraturePoints_element == 5)
15304  * elif self.nSpace_global == 2: # <<<<<<<<<<<<<<
15305  * assert(self.nQuadraturePoints_element == 6)
15306  * elif self.nSpace_global == 1:
15307  */
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15315  if (__pyx_t_3) {
15316 
15317  /* "ADR.pyx":764
15318  * assert(self.nQuadraturePoints_element == 5)
15319  * elif self.nSpace_global == 2:
15320  * assert(self.nQuadraturePoints_element == 6) # <<<<<<<<<<<<<<
15321  * elif self.nSpace_global == 1:
15322  * assert(self.nQuadraturePoints_element == 3)
15323  */
15324  #ifndef CYTHON_WITHOUT_ASSERTIONS
15325  if (unlikely(!Py_OptimizeFlag)) {
15326  __pyx_t_15 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_nQuadraturePoints_element); if (unlikely(!__pyx_t_15)) __PYX_ERR(0, 764, __pyx_L1_error)
15327  __Pyx_GOTREF(__pyx_t_15);
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15330  __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
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15341  * if self.nSpace_global == 3:
15342  * assert(self.nQuadraturePoints_element == 5)
15343  * elif self.nSpace_global == 2: # <<<<<<<<<<<<<<
15344  * assert(self.nQuadraturePoints_element == 6)
15345  * elif self.nSpace_global == 1:
15346  */
15347  goto __pyx_L89;
15348  }
15349 
15350  /* "ADR.pyx":765
15351  * elif self.nSpace_global == 2:
15352  * assert(self.nQuadraturePoints_element == 6)
15353  * elif self.nSpace_global == 1: # <<<<<<<<<<<<<<
15354  * assert(self.nQuadraturePoints_element == 3)
15355  *
15356  */
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15358  __Pyx_GOTREF(__pyx_t_6);
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15364  if (__pyx_t_3) {
15365 
15366  /* "ADR.pyx":766
15367  * assert(self.nQuadraturePoints_element == 6)
15368  * elif self.nSpace_global == 1:
15369  * assert(self.nQuadraturePoints_element == 3) # <<<<<<<<<<<<<<
15370  *
15371  * if self.nSpace_global == 3:
15372  */
15373  #ifndef CYTHON_WITHOUT_ASSERTIONS
15374  if (unlikely(!Py_OptimizeFlag)) {
15375  __pyx_t_15 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_nQuadraturePoints_element); if (unlikely(!__pyx_t_15)) __PYX_ERR(0, 766, __pyx_L1_error)
15376  __Pyx_GOTREF(__pyx_t_15);
15377  __pyx_t_6 = __Pyx_PyInt_EqObjC(__pyx_t_15, __pyx_int_3, 3, 0); if (unlikely(!__pyx_t_6)) __PYX_ERR(0, 766, __pyx_L1_error)
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15379  __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
15380  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(0, 766, __pyx_L1_error)
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15390  * elif self.nSpace_global == 2:
15391  * assert(self.nQuadraturePoints_element == 6)
15392  * elif self.nSpace_global == 1: # <<<<<<<<<<<<<<
15393  * assert(self.nQuadraturePoints_element == 3)
15394  *
15395  */
15396  }
15397  __pyx_L89:;
15398 
15399  /* "ADR.pyx":768
15400  * assert(self.nQuadraturePoints_element == 3)
15401  *
15402  * if self.nSpace_global == 3: # <<<<<<<<<<<<<<
15403  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15404  * elif self.nSpace_global == 2:
15405  */
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15411  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_15); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(0, 768, __pyx_L1_error)
15412  __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
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15414 
15415  /* "ADR.pyx":769
15416  *
15417  * if self.nSpace_global == 3:
15418  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4) # <<<<<<<<<<<<<<
15419  * elif self.nSpace_global == 2:
15420  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15421  */
15422  #ifndef CYTHON_WITHOUT_ASSERTIONS
15423  if (unlikely(!Py_OptimizeFlag)) {
15424  __pyx_t_15 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_nElementBoundaryQuadraturePoints); if (unlikely(!__pyx_t_15)) __PYX_ERR(0, 769, __pyx_L1_error)
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15428  __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
15429  __pyx_t_3 = __Pyx_PyObject_IsTrue(__pyx_t_6); if (unlikely(__pyx_t_3 < 0)) __PYX_ERR(0, 769, __pyx_L1_error)
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15435  }
15436  #endif
15437 
15438  /* "ADR.pyx":768
15439  * assert(self.nQuadraturePoints_element == 3)
15440  *
15441  * if self.nSpace_global == 3: # <<<<<<<<<<<<<<
15442  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15443  * elif self.nSpace_global == 2:
15444  */
15445  goto __pyx_L90;
15446  }
15447 
15448  /* "ADR.pyx":770
15449  * if self.nSpace_global == 3:
15450  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15451  * elif self.nSpace_global == 2: # <<<<<<<<<<<<<<
15452  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15453  * elif self.nSpace_global == 1:
15454  */
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15464  /* "ADR.pyx":771
15465  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15466  * elif self.nSpace_global == 2:
15467  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4) # <<<<<<<<<<<<<<
15468  * elif self.nSpace_global == 1:
15469  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 1)
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15472  if (unlikely(!Py_OptimizeFlag)) {
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15488  * if self.nSpace_global == 3:
15489  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15490  * elif self.nSpace_global == 2: # <<<<<<<<<<<<<<
15491  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15492  * elif self.nSpace_global == 1:
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15494  goto __pyx_L90;
15495  }
15496 
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15498  * elif self.nSpace_global == 2:
15499  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15500  * elif self.nSpace_global == 1: # <<<<<<<<<<<<<<
15501  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 1)
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15513  /* "ADR.pyx":773
15514  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15515  * elif self.nSpace_global == 1:
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15538  * assert(self.nElementBoundaryQuadraturePoints_elementBoundary == 4)
15539  * elif self.nSpace_global == 1: # <<<<<<<<<<<<<<
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15559  * self.ebq={}
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17340  * self.tensors_elementBoundaryQuadrature= set()
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17511  * for cj in range(self.nc):
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18228  * log(memory("inflowBC, internalNodes,updateLocal2Global","OneLevelTransport"),level=4)
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18575  * assert numericalFluxType is not None and numericalFluxType.useWeakDirichletConditions,"You must use a numerical flux to apply weak boundary conditions for parallel runs"
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18712  * log(memory("stride+offset","OneLevelTransport"),level=4)
18713  * if numericalFluxType is not None:
18714  * if options is None or options.periodicDirichletConditions is None: # <<<<<<<<<<<<<<
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18891  * diffusiveFluxBoundaryConditionsSetterDictDict)
18892  * else:
18893  * self.numericalFlux = numericalFluxType(self, # <<<<<<<<<<<<<<
18894  * dofBoundaryConditionsSetterDict,
18895  * advectiveFluxBoundaryConditionsSetterDict,
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18903  *
18904  * log(memory("stride+offset","OneLevelTransport"),level=4)
18905  * if numericalFluxType is not None: # <<<<<<<<<<<<<<
18906  * if options is None or options.periodicDirichletConditions is None:
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18909  goto __pyx_L109;
18910  }
18911 
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18913  * options.periodicDirichletConditions)
18914  * else:
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18916  * #set penalty terms
18917  * #cek todo move into numerical flux initialization
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18923 
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18925  * #set penalty terms
18926  * #cek todo move into numerical flux initialization
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18928  * for ebN in range(self.mesh.nElementBoundaries_global):
18929  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
18930  */
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18943  /* "ADR.pyx":877
18944  * #cek todo move into numerical flux initialization
18945  * if self.ebq_global.has_key('penalty'):
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18947  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
18948  * self.ebq_global['penalty'][ebN,k] = self.numericalFlux.penalty_constant/(self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power)
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19007  * if self.ebq_global.has_key('penalty'):
19008  * for ebN in range(self.mesh.nElementBoundaries_global):
19009  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary): # <<<<<<<<<<<<<<
19010  * self.ebq_global['penalty'][ebN,k] = self.numericalFlux.penalty_constant/(self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power)
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19066  /* "ADR.pyx":879
19067  * for ebN in range(self.mesh.nElementBoundaries_global):
19068  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
19069  * self.ebq_global['penalty'][ebN,k] = self.numericalFlux.penalty_constant/(self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power) # <<<<<<<<<<<<<<
19070  * #penalty term
19071  * #cek move to Numerical flux initialization
19072  */
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19118  * if self.ebq_global.has_key('penalty'):
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19128  * #cek todo move into numerical flux initialization
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19131  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
19132  * self.ebq_global['penalty'][ebN,k] = self.numericalFlux.penalty_constant/(self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power)
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19141  * for ebN in range(self.mesh.nElementBoundaries_global):
19142  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
19143  */
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19148  * #cek move to Numerical flux initialization
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19166  * #cek move to Numerical flux initialization
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19227 
19228  /* "ADR.pyx":884
19229  * if self.ebqe.has_key('penalty'):
19230  * for ebNE in range(self.mesh.nExteriorElementBoundaries_global):
19231  * ebN = self.mesh.exteriorElementBoundariesArray[ebNE] # <<<<<<<<<<<<<<
19232  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
19233  * self.ebqe['penalty'][ebNE,k] = self.numericalFlux.penalty_constant/self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power
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19244  __pyx_t_6 = 0;
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19246  /* "ADR.pyx":885
19247  * for ebNE in range(self.mesh.nExteriorElementBoundaries_global):
19248  * ebN = self.mesh.exteriorElementBoundariesArray[ebNE]
19249  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary): # <<<<<<<<<<<<<<
19250  * self.ebqe['penalty'][ebNE,k] = self.numericalFlux.penalty_constant/self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power
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19307  * ebN = self.mesh.exteriorElementBoundariesArray[ebNE]
19308  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
19309  * self.ebqe['penalty'][ebNE,k] = self.numericalFlux.penalty_constant/self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power # <<<<<<<<<<<<<<
19310  * log(memory("numericalFlux","OneLevelTransport"),level=4)
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19358  * for ebNE in range(self.mesh.nExteriorElementBoundaries_global):
19359  * ebN = self.mesh.exteriorElementBoundariesArray[ebNE]
19360  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary): # <<<<<<<<<<<<<<
19361  * self.ebqe['penalty'][ebNE,k] = self.numericalFlux.penalty_constant/self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power
19362  * log(memory("numericalFlux","OneLevelTransport"),level=4)
19363  */
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19368  * #cek move to Numerical flux initialization
19369  * if self.ebqe.has_key('penalty'):
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19371  * ebN = self.mesh.exteriorElementBoundariesArray[ebNE]
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19378  * #penalty term
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19380  * if self.ebqe.has_key('penalty'): # <<<<<<<<<<<<<<
19381  * for ebNE in range(self.mesh.nExteriorElementBoundaries_global):
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19387  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
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19390  * self.elementEffectiveDiametersArray = self.mesh.elementInnerDiametersArray
19391  * #use post processing tools to get conservative fluxes, None by default
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19416  * self.ebqe['penalty'][ebNE,k] = self.numericalFlux.penalty_constant/self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power
19417  * log(memory("numericalFlux","OneLevelTransport"),level=4)
19418  * self.elementEffectiveDiametersArray = self.mesh.elementInnerDiametersArray # <<<<<<<<<<<<<<
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19420  * from proteus import PostProcessingTools
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19431  * self.elementEffectiveDiametersArray = self.mesh.elementInnerDiametersArray
19432  * #use post processing tools to get conservative fluxes, None by default
19433  * from proteus import PostProcessingTools # <<<<<<<<<<<<<<
19434  * self.velocityPostProcessor = PostProcessingTools.VelocityPostProcessingChooser(self)
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19452  /* "ADR.pyx":891
19453  * #use post processing tools to get conservative fluxes, None by default
19454  * from proteus import PostProcessingTools
19455  * self.velocityPostProcessor = PostProcessingTools.VelocityPostProcessingChooser(self) # <<<<<<<<<<<<<<
19456  * log(memory("velocity postprocessor","OneLevelTransport"),level=4)
19457  * #helper for writing out data storage
19458  */
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19463  __pyx_t_7 = PyMethod_GET_SELF(__pyx_t_8);
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19508  * from proteus import PostProcessingTools
19509  * self.velocityPostProcessor = PostProcessingTools.VelocityPostProcessingChooser(self)
19510  * log(memory("velocity postprocessor","OneLevelTransport"),level=4) # <<<<<<<<<<<<<<
19511  * #helper for writing out data storage
19512  * from proteus import Archiver
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19537  * log(memory("velocity postprocessor","OneLevelTransport"),level=4)
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20562  * self.mesh.nodeVelocityArray = numpy.zeros(self.mesh.nodeArray.shape,'d')
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20579  /* "ADR.pyx":921
20580  * #cek/ido todo replace python loops in modules with optimized code if possible/necessary
20581  * self.forceStrongConditions=coefficients.forceStrongDirichlet
20582  * self.dirichletConditionsForceDOF = {} # <<<<<<<<<<<<<<
20583  * if self.forceStrongConditions:
20584  * for cj in range(self.nc):
20585  */
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20589  __Pyx_DECREF(__pyx_t_15); __pyx_t_15 = 0;
20590 
20591  /* "ADR.pyx":922
20592  * self.forceStrongConditions=coefficients.forceStrongDirichlet
20593  * self.dirichletConditionsForceDOF = {}
20594  * if self.forceStrongConditions: # <<<<<<<<<<<<<<
20595  * for cj in range(self.nc):
20596  * self.dirichletConditionsForceDOF[cj] = DOFBoundaryConditions(self.u[cj].femSpace,dofBoundaryConditionsSetterDict[cj],weakDirichletConditions=False)
20597  */
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20604  /* "ADR.pyx":923
20605  * self.dirichletConditionsForceDOF = {}
20606  * if self.forceStrongConditions:
20607  * for cj in range(self.nc): # <<<<<<<<<<<<<<
20608  * self.dirichletConditionsForceDOF[cj] = DOFBoundaryConditions(self.u[cj].femSpace,dofBoundaryConditionsSetterDict[cj],weakDirichletConditions=False)
20609  * compKernelFlag = 0
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20665  * if self.forceStrongConditions:
20666  * for cj in range(self.nc):
20667  * self.dirichletConditionsForceDOF[cj] = DOFBoundaryConditions(self.u[cj].femSpace,dofBoundaryConditionsSetterDict[cj],weakDirichletConditions=False) # <<<<<<<<<<<<<<
20668  * compKernelFlag = 0
20669  * self.adr = ADR(self.nSpace_global,
20670  */
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20705  /* "ADR.pyx":923
20706  * self.dirichletConditionsForceDOF = {}
20707  * if self.forceStrongConditions:
20708  * for cj in range(self.nc): # <<<<<<<<<<<<<<
20709  * self.dirichletConditionsForceDOF[cj] = DOFBoundaryConditions(self.u[cj].femSpace,dofBoundaryConditionsSetterDict[cj],weakDirichletConditions=False)
20710  * compKernelFlag = 0
20711  */
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20715  /* "ADR.pyx":922
20716  * self.forceStrongConditions=coefficients.forceStrongDirichlet
20717  * self.dirichletConditionsForceDOF = {}
20718  * if self.forceStrongConditions: # <<<<<<<<<<<<<<
20719  * for cj in range(self.nc):
20720  * self.dirichletConditionsForceDOF[cj] = DOFBoundaryConditions(self.u[cj].femSpace,dofBoundaryConditionsSetterDict[cj],weakDirichletConditions=False)
20721  */
20722  }
20723 
20724  /* "ADR.pyx":925
20725  * for cj in range(self.nc):
20726  * self.dirichletConditionsForceDOF[cj] = DOFBoundaryConditions(self.u[cj].femSpace,dofBoundaryConditionsSetterDict[cj],weakDirichletConditions=False)
20727  * compKernelFlag = 0 # <<<<<<<<<<<<<<
20728  * self.adr = ADR(self.nSpace_global,
20729  * self.nQuadraturePoints_element,
20730  */
20731  __pyx_v_compKernelFlag = 0;
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20734  * self.dirichletConditionsForceDOF[cj] = DOFBoundaryConditions(self.u[cj].femSpace,dofBoundaryConditionsSetterDict[cj],weakDirichletConditions=False)
20735  * compKernelFlag = 0
20736  * self.adr = ADR(self.nSpace_global, # <<<<<<<<<<<<<<
20737  * self.nQuadraturePoints_element,
20738  * self.u[0].femSpace.elementMaps.localFunctionSpace.dim,
20739  */
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20744  * compKernelFlag = 0
20745  * self.adr = ADR(self.nSpace_global,
20746  * self.nQuadraturePoints_element, # <<<<<<<<<<<<<<
20747  * self.u[0].femSpace.elementMaps.localFunctionSpace.dim,
20748  * self.u[0].femSpace.referenceFiniteElement.localFunctionSpace.dim,
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20756  * self.u[0].femSpace.elementMaps.localFunctionSpace.dim, # <<<<<<<<<<<<<<
20757  * self.u[0].femSpace.referenceFiniteElement.localFunctionSpace.dim,
20758  * self.testSpace[0].referenceFiniteElement.localFunctionSpace.dim,
20759  */
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20779  * self.nQuadraturePoints_element,
20780  * self.u[0].femSpace.elementMaps.localFunctionSpace.dim,
20781  * self.u[0].femSpace.referenceFiniteElement.localFunctionSpace.dim, # <<<<<<<<<<<<<<
20782  * self.testSpace[0].referenceFiniteElement.localFunctionSpace.dim,
20783  * self.nElementBoundaryQuadraturePoints_elementBoundary,
20784  */
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20804  * self.u[0].femSpace.elementMaps.localFunctionSpace.dim,
20805  * self.u[0].femSpace.referenceFiniteElement.localFunctionSpace.dim,
20806  * self.testSpace[0].referenceFiniteElement.localFunctionSpace.dim, # <<<<<<<<<<<<<<
20807  * self.nElementBoundaryQuadraturePoints_elementBoundary,
20808  * compKernelFlag)
20809  */
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20826  * self.u[0].femSpace.referenceFiniteElement.localFunctionSpace.dim,
20827  * self.testSpace[0].referenceFiniteElement.localFunctionSpace.dim,
20828  * self.nElementBoundaryQuadraturePoints_elementBoundary, # <<<<<<<<<<<<<<
20829  * compKernelFlag)
20830  * #mwf these are getting called by redistancing classes,
20831  */
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20836  * self.testSpace[0].referenceFiniteElement.localFunctionSpace.dim,
20837  * self.nElementBoundaryQuadraturePoints_elementBoundary,
20838  * compKernelFlag) # <<<<<<<<<<<<<<
20839  * #mwf these are getting called by redistancing classes,
20840  * def calculateCoefficients(self):
20841  */
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20846  * self.dirichletConditionsForceDOF[cj] = DOFBoundaryConditions(self.u[cj].femSpace,dofBoundaryConditionsSetterDict[cj],weakDirichletConditions=False)
20847  * compKernelFlag = 0
20848  * self.adr = ADR(self.nSpace_global, # <<<<<<<<<<<<<<
20849  * self.nQuadraturePoints_element,
20850  * self.u[0].femSpace.elementMaps.localFunctionSpace.dim,
20851  */
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21241  * #no flux boundary conditions
21242  * self.adr.calculateResidual(#element
21243  * self.u[0].femSpace.elementMaps.psi, # <<<<<<<<<<<<<<
21244  * self.u[0].femSpace.elementMaps.grad_psi,
21245  * self.mesh.nodeArray,
21246  */
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21263  * self.adr.calculateResidual(#element
21264  * self.u[0].femSpace.elementMaps.psi,
21265  * self.u[0].femSpace.elementMaps.grad_psi, # <<<<<<<<<<<<<<
21266  * self.mesh.nodeArray,
21267  * self.mesh.elementNodesArray,
21268  */
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21285  * self.u[0].femSpace.elementMaps.psi,
21286  * self.u[0].femSpace.elementMaps.grad_psi,
21287  * self.mesh.nodeArray, # <<<<<<<<<<<<<<
21288  * self.mesh.elementNodesArray,
21289  * self.elementQuadratureWeights[('u',0)],
21290  */
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21298  * self.u[0].femSpace.elementMaps.grad_psi,
21299  * self.mesh.nodeArray,
21300  * self.mesh.elementNodesArray, # <<<<<<<<<<<<<<
21301  * self.elementQuadratureWeights[('u',0)],
21302  * self.u[0].femSpace.psi,
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21311  * self.mesh.nodeArray,
21312  * self.mesh.elementNodesArray,
21313  * self.elementQuadratureWeights[('u',0)], # <<<<<<<<<<<<<<
21314  * self.u[0].femSpace.psi,
21315  * self.u[0].femSpace.grad_psi,
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21324  * self.mesh.elementNodesArray,
21325  * self.elementQuadratureWeights[('u',0)],
21326  * self.u[0].femSpace.psi, # <<<<<<<<<<<<<<
21327  * self.u[0].femSpace.grad_psi,
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21344  * self.u[0].femSpace.psi,
21345  * self.u[0].femSpace.grad_psi, # <<<<<<<<<<<<<<
21346  * self.u[0].femSpace.psi,
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21362  * self.u[0].femSpace.psi,
21363  * self.u[0].femSpace.grad_psi,
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21365  * self.u[0].femSpace.grad_psi,
21366  * self.mesh.elementDiametersArray,
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21381  * self.u[0].femSpace.grad_psi,
21382  * self.u[0].femSpace.psi,
21383  * self.u[0].femSpace.grad_psi, # <<<<<<<<<<<<<<
21384  * self.mesh.elementDiametersArray,
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21400  * self.u[0].femSpace.psi,
21401  * self.u[0].femSpace.grad_psi,
21402  * self.mesh.elementDiametersArray, # <<<<<<<<<<<<<<
21403  * self.q[('cfl',0)],
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21413  * self.u[0].femSpace.grad_psi,
21414  * self.mesh.elementDiametersArray,
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21416  * self.shockCapturing.shockCapturingFactor,
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21426  * self.mesh.elementDiametersArray,
21427  * self.q[('cfl',0)],
21428  * self.shockCapturing.shockCapturingFactor, # <<<<<<<<<<<<<<
21429  * self.coefficients.sc_uref,
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21442  * self.coefficients.sc_beta,
21443  * self.coefficients.useMetrics,
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21453  * self.coefficients.sc_uref,
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21455  * self.coefficients.useMetrics,
21456  * #element boundary
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21466  * self.coefficients.sc_beta,
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21468  * #element boundary
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21481  * self.u[0].femSpace.elementMaps.grad_psi_trace,
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21521  /* "ADR.pyx":968
21522  * self.u[0].femSpace.elementMaps.psi_trace,
21523  * self.u[0].femSpace.elementMaps.grad_psi_trace,
21524  * self.elementBoundaryQuadratureWeights[('u',0)], # <<<<<<<<<<<<<<
21525  * self.u[0].femSpace.psi_trace,
21526  * self.u[0].femSpace.grad_psi_trace,
21527  */
21528  __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_elementBoundaryQuadratureWeights); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 968, __pyx_L1_error)
21529  __Pyx_GOTREF(__pyx_t_20);
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21532  __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
21533 
21534  /* "ADR.pyx":969
21535  * self.u[0].femSpace.elementMaps.grad_psi_trace,
21536  * self.elementBoundaryQuadratureWeights[('u',0)],
21537  * self.u[0].femSpace.psi_trace, # <<<<<<<<<<<<<<
21538  * self.u[0].femSpace.grad_psi_trace,
21539  * self.u[0].femSpace.psi_trace,
21540  */
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21554  * self.elementBoundaryQuadratureWeights[('u',0)],
21555  * self.u[0].femSpace.psi_trace,
21556  * self.u[0].femSpace.grad_psi_trace, # <<<<<<<<<<<<<<
21557  * self.u[0].femSpace.psi_trace,
21558  * self.u[0].femSpace.grad_psi_trace,
21559  */
21560  __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 970, __pyx_L1_error)
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21566  __Pyx_GOTREF(__pyx_t_20);
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21568  __pyx_t_23 = __Pyx_PyObject_GetAttrStr(__pyx_t_20, __pyx_n_s_grad_psi_trace); if (unlikely(!__pyx_t_23)) __PYX_ERR(0, 970, __pyx_L1_error)
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21570  __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
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21573  * self.u[0].femSpace.psi_trace,
21574  * self.u[0].femSpace.grad_psi_trace,
21575  * self.u[0].femSpace.psi_trace, # <<<<<<<<<<<<<<
21576  * self.u[0].femSpace.grad_psi_trace,
21577  * self.u[0].femSpace.elementMaps.boundaryNormals,
21578  */
21579  __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 971, __pyx_L1_error)
21580  __Pyx_GOTREF(__pyx_t_20);
21581  __pyx_t_24 = __Pyx_GetItemInt(__pyx_t_20, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_24)) __PYX_ERR(0, 971, __pyx_L1_error)
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21583  __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
21584  __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_t_24, __pyx_n_s_femSpace); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 971, __pyx_L1_error)
21585  __Pyx_GOTREF(__pyx_t_20);
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21589  __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
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21592  * self.u[0].femSpace.grad_psi_trace,
21593  * self.u[0].femSpace.psi_trace,
21594  * self.u[0].femSpace.grad_psi_trace, # <<<<<<<<<<<<<<
21595  * self.u[0].femSpace.elementMaps.boundaryNormals,
21596  * self.u[0].femSpace.elementMaps.boundaryJacobians,
21597  */
21598  __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 972, __pyx_L1_error)
21599  __Pyx_GOTREF(__pyx_t_20);
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21602  __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
21603  __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_t_25, __pyx_n_s_femSpace); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 972, __pyx_L1_error)
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21605  __Pyx_DECREF(__pyx_t_25); __pyx_t_25 = 0;
21606  __pyx_t_25 = __Pyx_PyObject_GetAttrStr(__pyx_t_20, __pyx_n_s_grad_psi_trace); if (unlikely(!__pyx_t_25)) __PYX_ERR(0, 972, __pyx_L1_error)
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21608  __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
21609 
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21611  * self.u[0].femSpace.psi_trace,
21612  * self.u[0].femSpace.grad_psi_trace,
21613  * self.u[0].femSpace.elementMaps.boundaryNormals, # <<<<<<<<<<<<<<
21614  * self.u[0].femSpace.elementMaps.boundaryJacobians,
21615  * #physics
21616  */
21617  __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 973, __pyx_L1_error)
21618  __Pyx_GOTREF(__pyx_t_20);
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21621  __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
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21623  __Pyx_GOTREF(__pyx_t_20);
21624  __Pyx_DECREF(__pyx_t_26); __pyx_t_26 = 0;
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21626  __Pyx_GOTREF(__pyx_t_26);
21627  __Pyx_DECREF(__pyx_t_20); __pyx_t_20 = 0;
21628  __pyx_t_20 = __Pyx_PyObject_GetAttrStr(__pyx_t_26, __pyx_n_s_boundaryNormals); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 973, __pyx_L1_error)
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21630  __Pyx_DECREF(__pyx_t_26); __pyx_t_26 = 0;
21631 
21632  /* "ADR.pyx":974
21633  * self.u[0].femSpace.grad_psi_trace,
21634  * self.u[0].femSpace.elementMaps.boundaryNormals,
21635  * self.u[0].femSpace.elementMaps.boundaryJacobians, # <<<<<<<<<<<<<<
21636  * #physics
21637  * self.mesh.nElements_global,
21638  */
21639  __pyx_t_26 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_26)) __PYX_ERR(0, 974, __pyx_L1_error)
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21645  __Pyx_GOTREF(__pyx_t_26);
21646  __Pyx_DECREF(__pyx_t_27); __pyx_t_27 = 0;
21647  __pyx_t_27 = __Pyx_PyObject_GetAttrStr(__pyx_t_26, __pyx_n_s_elementMaps); if (unlikely(!__pyx_t_27)) __PYX_ERR(0, 974, __pyx_L1_error)
21648  __Pyx_GOTREF(__pyx_t_27);
21649  __Pyx_DECREF(__pyx_t_26); __pyx_t_26 = 0;
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21652  __Pyx_DECREF(__pyx_t_27); __pyx_t_27 = 0;
21653 
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21655  * self.u[0].femSpace.elementMaps.boundaryJacobians,
21656  * #physics
21657  * self.mesh.nElements_global, # <<<<<<<<<<<<<<
21658  * self.u[0].femSpace.dofMap.l2g,
21659  * self.u[0].dof,
21660  */
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21665  __Pyx_DECREF(__pyx_t_27); __pyx_t_27 = 0;
21666 
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21668  * #physics
21669  * self.mesh.nElements_global,
21670  * self.u[0].femSpace.dofMap.l2g, # <<<<<<<<<<<<<<
21671  * self.u[0].dof,
21672  * self.coefficients.sdInfo[(0,0)][0],
21673  */
21674  __pyx_t_27 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_u); if (unlikely(!__pyx_t_27)) __PYX_ERR(0, 977, __pyx_L1_error)
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21681  __Pyx_DECREF(__pyx_t_29); __pyx_t_29 = 0;
21682  __pyx_t_29 = __Pyx_PyObject_GetAttrStr(__pyx_t_27, __pyx_n_s_dofMap); if (unlikely(!__pyx_t_29)) __PYX_ERR(0, 977, __pyx_L1_error)
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21687  __Pyx_DECREF(__pyx_t_29); __pyx_t_29 = 0;
21688 
21689  /* "ADR.pyx":978
21690  * self.mesh.nElements_global,
21691  * self.u[0].femSpace.dofMap.l2g,
21692  * self.u[0].dof, # <<<<<<<<<<<<<<
21693  * self.coefficients.sdInfo[(0,0)][0],
21694  * self.coefficients.sdInfo[(0,0)][1],
21695  */
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21700  __Pyx_DECREF(__pyx_t_29); __pyx_t_29 = 0;
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21702  __Pyx_GOTREF(__pyx_t_29);
21703  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21704 
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21706  * self.u[0].femSpace.dofMap.l2g,
21707  * self.u[0].dof,
21708  * self.coefficients.sdInfo[(0,0)][0], # <<<<<<<<<<<<<<
21709  * self.coefficients.sdInfo[(0,0)][1],
21710  * self.q[('a',0,0)],
21711  */
21712  __pyx_t_30 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_coefficients); if (unlikely(!__pyx_t_30)) __PYX_ERR(0, 979, __pyx_L1_error)
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21714  __pyx_t_31 = __Pyx_PyObject_GetAttrStr(__pyx_t_30, __pyx_n_s_sdInfo); if (unlikely(!__pyx_t_31)) __PYX_ERR(0, 979, __pyx_L1_error)
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21716  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
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21719  __Pyx_DECREF(__pyx_t_31); __pyx_t_31 = 0;
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21722  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21723 
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21725  * self.u[0].dof,
21726  * self.coefficients.sdInfo[(0,0)][0],
21727  * self.coefficients.sdInfo[(0,0)][1], # <<<<<<<<<<<<<<
21728  * self.q[('a',0,0)],
21729  * self.q[('df',0,0)],
21730  */
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21738  __Pyx_DECREF(__pyx_t_32); __pyx_t_32 = 0;
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21741  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21742 
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21744  * self.coefficients.sdInfo[(0,0)][0],
21745  * self.coefficients.sdInfo[(0,0)][1],
21746  * self.q[('a',0,0)], # <<<<<<<<<<<<<<
21747  * self.q[('df',0,0)],
21748  * self.q[('r',0)],
21749  */
21750  __pyx_t_30 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_q); if (unlikely(!__pyx_t_30)) __PYX_ERR(0, 981, __pyx_L1_error)
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21754  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21755 
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21757  * self.coefficients.sdInfo[(0,0)][1],
21758  * self.q[('a',0,0)],
21759  * self.q[('df',0,0)], # <<<<<<<<<<<<<<
21760  * self.q[('r',0)],
21761  * self.shockCapturing.lag,
21762  */
21763  __pyx_t_30 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_q); if (unlikely(!__pyx_t_30)) __PYX_ERR(0, 982, __pyx_L1_error)
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21767  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21768 
21769  /* "ADR.pyx":983
21770  * self.q[('a',0,0)],
21771  * self.q[('df',0,0)],
21772  * self.q[('r',0)], # <<<<<<<<<<<<<<
21773  * self.shockCapturing.lag,
21774  * self.shockCapturing.shockCapturingFactor,
21775  */
21776  __pyx_t_30 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_q); if (unlikely(!__pyx_t_30)) __PYX_ERR(0, 983, __pyx_L1_error)
21777  __Pyx_GOTREF(__pyx_t_30);
21778  __pyx_t_35 = PyObject_GetItem(__pyx_t_30, __pyx_tuple__64); if (unlikely(!__pyx_t_35)) __PYX_ERR(0, 983, __pyx_L1_error)
21779  __Pyx_GOTREF(__pyx_t_35);
21780  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21781 
21782  /* "ADR.pyx":984
21783  * self.q[('df',0,0)],
21784  * self.q[('r',0)],
21785  * self.shockCapturing.lag, # <<<<<<<<<<<<<<
21786  * self.shockCapturing.shockCapturingFactor,
21787  * self.shockCapturing.numDiff[0],
21788  */
21789  __pyx_t_30 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_shockCapturing); if (unlikely(!__pyx_t_30)) __PYX_ERR(0, 984, __pyx_L1_error)
21790  __Pyx_GOTREF(__pyx_t_30);
21791  __pyx_t_36 = __Pyx_PyObject_GetAttrStr(__pyx_t_30, __pyx_n_s_lag); if (unlikely(!__pyx_t_36)) __PYX_ERR(0, 984, __pyx_L1_error)
21792  __Pyx_GOTREF(__pyx_t_36);
21793  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21794 
21795  /* "ADR.pyx":985
21796  * self.q[('r',0)],
21797  * self.shockCapturing.lag,
21798  * self.shockCapturing.shockCapturingFactor, # <<<<<<<<<<<<<<
21799  * self.shockCapturing.numDiff[0],
21800  * self.shockCapturing.numDiff_last[0],
21801  */
21802  __pyx_t_30 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_shockCapturing); if (unlikely(!__pyx_t_30)) __PYX_ERR(0, 985, __pyx_L1_error)
21803  __Pyx_GOTREF(__pyx_t_30);
21804  __pyx_t_37 = __Pyx_PyObject_GetAttrStr(__pyx_t_30, __pyx_n_s_shockCapturingFactor); if (unlikely(!__pyx_t_37)) __PYX_ERR(0, 985, __pyx_L1_error)
21805  __Pyx_GOTREF(__pyx_t_37);
21806  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21807 
21808  /* "ADR.pyx":986
21809  * self.shockCapturing.lag,
21810  * self.shockCapturing.shockCapturingFactor,
21811  * self.shockCapturing.numDiff[0], # <<<<<<<<<<<<<<
21812  * self.shockCapturing.numDiff_last[0],
21813  * self.offset[0],
21814  */
21815  __pyx_t_30 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_shockCapturing); if (unlikely(!__pyx_t_30)) __PYX_ERR(0, 986, __pyx_L1_error)
21816  __Pyx_GOTREF(__pyx_t_30);
21817  __pyx_t_38 = __Pyx_PyObject_GetAttrStr(__pyx_t_30, __pyx_n_s_numDiff); if (unlikely(!__pyx_t_38)) __PYX_ERR(0, 986, __pyx_L1_error)
21818  __Pyx_GOTREF(__pyx_t_38);
21819  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
21820  __pyx_t_30 = __Pyx_GetItemInt(__pyx_t_38, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_30)) __PYX_ERR(0, 986, __pyx_L1_error)
21821  __Pyx_GOTREF(__pyx_t_30);
21822  __Pyx_DECREF(__pyx_t_38); __pyx_t_38 = 0;
21823 
21824  /* "ADR.pyx":987
21825  * self.shockCapturing.shockCapturingFactor,
21826  * self.shockCapturing.numDiff[0],
21827  * self.shockCapturing.numDiff_last[0], # <<<<<<<<<<<<<<
21828  * self.offset[0],
21829  * self.stride[0],
21830  */
21831  __pyx_t_38 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_shockCapturing); if (unlikely(!__pyx_t_38)) __PYX_ERR(0, 987, __pyx_L1_error)
21832  __Pyx_GOTREF(__pyx_t_38);
21833  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_t_38, __pyx_n_s_numDiff_last); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 987, __pyx_L1_error)
21834  __Pyx_GOTREF(__pyx_t_39);
21835  __Pyx_DECREF(__pyx_t_38); __pyx_t_38 = 0;
21836  __pyx_t_38 = __Pyx_GetItemInt(__pyx_t_39, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_38)) __PYX_ERR(0, 987, __pyx_L1_error)
21837  __Pyx_GOTREF(__pyx_t_38);
21838  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21839 
21840  /* "ADR.pyx":988
21841  * self.shockCapturing.numDiff[0],
21842  * self.shockCapturing.numDiff_last[0],
21843  * self.offset[0], # <<<<<<<<<<<<<<
21844  * self.stride[0],
21845  * r,
21846  */
21847  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_offset); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 988, __pyx_L1_error)
21848  __Pyx_GOTREF(__pyx_t_39);
21849  __pyx_t_40 = __Pyx_GetItemInt(__pyx_t_39, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_40)) __PYX_ERR(0, 988, __pyx_L1_error)
21850  __Pyx_GOTREF(__pyx_t_40);
21851  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21852 
21853  /* "ADR.pyx":989
21854  * self.shockCapturing.numDiff_last[0],
21855  * self.offset[0],
21856  * self.stride[0], # <<<<<<<<<<<<<<
21857  * r,
21858  * self.mesh.nExteriorElementBoundaries_global,
21859  */
21860  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_stride); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 989, __pyx_L1_error)
21861  __Pyx_GOTREF(__pyx_t_39);
21862  __pyx_t_41 = __Pyx_GetItemInt(__pyx_t_39, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_41)) __PYX_ERR(0, 989, __pyx_L1_error)
21863  __Pyx_GOTREF(__pyx_t_41);
21864  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21865 
21866  /* "ADR.pyx":991
21867  * self.stride[0],
21868  * r,
21869  * self.mesh.nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
21870  * self.mesh.exteriorElementBoundariesArray,
21871  * self.mesh.elementBoundaryElementsArray,
21872  */
21873  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_mesh); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 991, __pyx_L1_error)
21874  __Pyx_GOTREF(__pyx_t_39);
21875  __pyx_t_42 = __Pyx_PyObject_GetAttrStr(__pyx_t_39, __pyx_n_s_nExteriorElementBoundaries_globa); if (unlikely(!__pyx_t_42)) __PYX_ERR(0, 991, __pyx_L1_error)
21876  __Pyx_GOTREF(__pyx_t_42);
21877  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21878 
21879  /* "ADR.pyx":992
21880  * r,
21881  * self.mesh.nExteriorElementBoundaries_global,
21882  * self.mesh.exteriorElementBoundariesArray, # <<<<<<<<<<<<<<
21883  * self.mesh.elementBoundaryElementsArray,
21884  * self.mesh.elementBoundaryLocalElementBoundariesArray,
21885  */
21886  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_mesh); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 992, __pyx_L1_error)
21887  __Pyx_GOTREF(__pyx_t_39);
21888  __pyx_t_43 = __Pyx_PyObject_GetAttrStr(__pyx_t_39, __pyx_n_s_exteriorElementBoundariesArray); if (unlikely(!__pyx_t_43)) __PYX_ERR(0, 992, __pyx_L1_error)
21889  __Pyx_GOTREF(__pyx_t_43);
21890  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21891 
21892  /* "ADR.pyx":993
21893  * self.mesh.nExteriorElementBoundaries_global,
21894  * self.mesh.exteriorElementBoundariesArray,
21895  * self.mesh.elementBoundaryElementsArray, # <<<<<<<<<<<<<<
21896  * self.mesh.elementBoundaryLocalElementBoundariesArray,
21897  * self.ebqe[('a',0,0)],
21898  */
21899  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_mesh); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 993, __pyx_L1_error)
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21903  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21904 
21905  /* "ADR.pyx":994
21906  * self.mesh.exteriorElementBoundariesArray,
21907  * self.mesh.elementBoundaryElementsArray,
21908  * self.mesh.elementBoundaryLocalElementBoundariesArray, # <<<<<<<<<<<<<<
21909  * self.ebqe[('a',0,0)],
21910  * self.ebqe[('df',0,0)],
21911  */
21912  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_mesh); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 994, __pyx_L1_error)
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21916  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21917 
21918  /* "ADR.pyx":995
21919  * self.mesh.elementBoundaryElementsArray,
21920  * self.mesh.elementBoundaryLocalElementBoundariesArray,
21921  * self.ebqe[('a',0,0)], # <<<<<<<<<<<<<<
21922  * self.ebqe[('df',0,0)],
21923  * self.numericalFlux.isDOFBoundary[0],
21924  */
21925  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_ebqe); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 995, __pyx_L1_error)
21926  __Pyx_GOTREF(__pyx_t_39);
21927  __pyx_t_46 = PyObject_GetItem(__pyx_t_39, __pyx_tuple__65); if (unlikely(!__pyx_t_46)) __PYX_ERR(0, 995, __pyx_L1_error)
21928  __Pyx_GOTREF(__pyx_t_46);
21929  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21930 
21931  /* "ADR.pyx":996
21932  * self.mesh.elementBoundaryLocalElementBoundariesArray,
21933  * self.ebqe[('a',0,0)],
21934  * self.ebqe[('df',0,0)], # <<<<<<<<<<<<<<
21935  * self.numericalFlux.isDOFBoundary[0],
21936  * self.numericalFlux.ebqe[('u',0)],
21937  */
21938  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_ebqe); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 996, __pyx_L1_error)
21939  __Pyx_GOTREF(__pyx_t_39);
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21941  __Pyx_GOTREF(__pyx_t_47);
21942  __Pyx_DECREF(__pyx_t_39); __pyx_t_39 = 0;
21943 
21944  /* "ADR.pyx":997
21945  * self.ebqe[('a',0,0)],
21946  * self.ebqe[('df',0,0)],
21947  * self.numericalFlux.isDOFBoundary[0], # <<<<<<<<<<<<<<
21948  * self.numericalFlux.ebqe[('u',0)],
21949  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
21950  */
21951  __pyx_t_39 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_numericalFlux); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 997, __pyx_L1_error)
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21954  __Pyx_GOTREF(__pyx_t_48);
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21956  __pyx_t_39 = __Pyx_GetItemInt(__pyx_t_48, 0, long, 1, __Pyx_PyInt_From_long, 0, 0, 1); if (unlikely(!__pyx_t_39)) __PYX_ERR(0, 997, __pyx_L1_error)
21957  __Pyx_GOTREF(__pyx_t_39);
21958  __Pyx_DECREF(__pyx_t_48); __pyx_t_48 = 0;
21959 
21960  /* "ADR.pyx":998
21961  * self.ebqe[('df',0,0)],
21962  * self.numericalFlux.isDOFBoundary[0],
21963  * self.numericalFlux.ebqe[('u',0)], # <<<<<<<<<<<<<<
21964  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
21965  * self.ebqe[('advectiveFlux_bc_flag',0)],
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21967  __pyx_t_48 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_numericalFlux); if (unlikely(!__pyx_t_48)) __PYX_ERR(0, 998, __pyx_L1_error)
21968  __Pyx_GOTREF(__pyx_t_48);
21969  __pyx_t_49 = __Pyx_PyObject_GetAttrStr(__pyx_t_48, __pyx_n_s_ebqe); if (unlikely(!__pyx_t_49)) __PYX_ERR(0, 998, __pyx_L1_error)
21970  __Pyx_GOTREF(__pyx_t_49);
21971  __Pyx_DECREF(__pyx_t_48); __pyx_t_48 = 0;
21972  __pyx_t_48 = PyObject_GetItem(__pyx_t_49, __pyx_tuple__67); if (unlikely(!__pyx_t_48)) __PYX_ERR(0, 998, __pyx_L1_error)
21973  __Pyx_GOTREF(__pyx_t_48);
21974  __Pyx_DECREF(__pyx_t_49); __pyx_t_49 = 0;
21975 
21976  /* "ADR.pyx":999
21977  * self.numericalFlux.isDOFBoundary[0],
21978  * self.numericalFlux.ebqe[('u',0)],
21979  * self.ebqe[('diffusiveFlux_bc_flag',0,0)], # <<<<<<<<<<<<<<
21980  * self.ebqe[('advectiveFlux_bc_flag',0)],
21981  * self.ebqe[('diffusiveFlux_bc',0,0)],
21982  */
21983  __pyx_t_49 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_ebqe); if (unlikely(!__pyx_t_49)) __PYX_ERR(0, 999, __pyx_L1_error)
21984  __Pyx_GOTREF(__pyx_t_49);
21985  __pyx_t_50 = PyObject_GetItem(__pyx_t_49, __pyx_tuple__68); if (unlikely(!__pyx_t_50)) __PYX_ERR(0, 999, __pyx_L1_error)
21986  __Pyx_GOTREF(__pyx_t_50);
21987  __Pyx_DECREF(__pyx_t_49); __pyx_t_49 = 0;
21988 
21989  /* "ADR.pyx":1000
21990  * self.numericalFlux.ebqe[('u',0)],
21991  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
21992  * self.ebqe[('advectiveFlux_bc_flag',0)], # <<<<<<<<<<<<<<
21993  * self.ebqe[('diffusiveFlux_bc',0,0)],
21994  * self.ebqe[('advectiveFlux_bc',0)],
21995  */
21996  __pyx_t_49 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_ebqe); if (unlikely(!__pyx_t_49)) __PYX_ERR(0, 1000, __pyx_L1_error)
21997  __Pyx_GOTREF(__pyx_t_49);
21998  __pyx_t_51 = PyObject_GetItem(__pyx_t_49, __pyx_tuple__69); if (unlikely(!__pyx_t_51)) __PYX_ERR(0, 1000, __pyx_L1_error)
21999  __Pyx_GOTREF(__pyx_t_51);
22000  __Pyx_DECREF(__pyx_t_49); __pyx_t_49 = 0;
22001 
22002  /* "ADR.pyx":1001
22003  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
22004  * self.ebqe[('advectiveFlux_bc_flag',0)],
22005  * self.ebqe[('diffusiveFlux_bc',0,0)], # <<<<<<<<<<<<<<
22006  * self.ebqe[('advectiveFlux_bc',0)],
22007  * self.ebqe['penalty'],
22008  */
22009  __pyx_t_49 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_ebqe); if (unlikely(!__pyx_t_49)) __PYX_ERR(0, 1001, __pyx_L1_error)
22010  __Pyx_GOTREF(__pyx_t_49);
22011  __pyx_t_52 = PyObject_GetItem(__pyx_t_49, __pyx_tuple__70); if (unlikely(!__pyx_t_52)) __PYX_ERR(0, 1001, __pyx_L1_error)
22012  __Pyx_GOTREF(__pyx_t_52);
22013  __Pyx_DECREF(__pyx_t_49); __pyx_t_49 = 0;
22014 
22015  /* "ADR.pyx":1002
22016  * self.ebqe[('advectiveFlux_bc_flag',0)],
22017  * self.ebqe[('diffusiveFlux_bc',0,0)],
22018  * self.ebqe[('advectiveFlux_bc',0)], # <<<<<<<<<<<<<<
22019  * self.ebqe['penalty'],
22020  * self.numericalFlux.boundaryAdjoint_sigma)
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22022  __pyx_t_49 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_ebqe); if (unlikely(!__pyx_t_49)) __PYX_ERR(0, 1002, __pyx_L1_error)
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22025  __Pyx_GOTREF(__pyx_t_53);
22026  __Pyx_DECREF(__pyx_t_49); __pyx_t_49 = 0;
22027 
22028  /* "ADR.pyx":1003
22029  * self.ebqe[('diffusiveFlux_bc',0,0)],
22030  * self.ebqe[('advectiveFlux_bc',0)],
22031  * self.ebqe['penalty'], # <<<<<<<<<<<<<<
22032  * self.numericalFlux.boundaryAdjoint_sigma)
22033  * log("Global residual",level=9,data=r)
22034  */
22035  __pyx_t_49 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_ebqe); if (unlikely(!__pyx_t_49)) __PYX_ERR(0, 1003, __pyx_L1_error)
22036  __Pyx_GOTREF(__pyx_t_49);
22037  __pyx_t_54 = PyObject_GetItem(__pyx_t_49, __pyx_n_s_penalty); if (unlikely(!__pyx_t_54)) __PYX_ERR(0, 1003, __pyx_L1_error)
22038  __Pyx_GOTREF(__pyx_t_54);
22039  __Pyx_DECREF(__pyx_t_49); __pyx_t_49 = 0;
22040 
22041  /* "ADR.pyx":1004
22042  * self.ebqe[('advectiveFlux_bc',0)],
22043  * self.ebqe['penalty'],
22044  * self.numericalFlux.boundaryAdjoint_sigma) # <<<<<<<<<<<<<<
22045  * log("Global residual",level=9,data=r)
22046  * self.coefficients.massConservationError = fabs(globalSum(sum(r.flat[:self.mesh.nElements_owned])))
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22048  __pyx_t_49 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_numericalFlux); if (unlikely(!__pyx_t_49)) __PYX_ERR(0, 1004, __pyx_L1_error)
22049  __Pyx_GOTREF(__pyx_t_49);
22050  __pyx_t_55 = __Pyx_PyObject_GetAttrStr(__pyx_t_49, __pyx_n_s_boundaryAdjoint_sigma); if (unlikely(!__pyx_t_55)) __PYX_ERR(0, 1004, __pyx_L1_error)
22051  __Pyx_GOTREF(__pyx_t_55);
22052  __Pyx_DECREF(__pyx_t_49); __pyx_t_49 = 0;
22053  __pyx_t_49 = NULL;
22054  __pyx_t_56 = 0;
22055  if (CYTHON_UNPACK_METHODS && likely(PyMethod_Check(__pyx_t_4))) {
22056  __pyx_t_49 = PyMethod_GET_SELF(__pyx_t_4);
22057  if (likely(__pyx_t_49)) {
22058  PyObject* function = PyMethod_GET_FUNCTION(__pyx_t_4);
22059  __Pyx_INCREF(__pyx_t_49);
22060  __Pyx_INCREF(function);
22061  __Pyx_DECREF_SET(__pyx_t_4, function);
22062  __pyx_t_56 = 1;
22063  }
22064  }
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22757  * cfemIntegrals.zeroJacobian_CSR(self.nNonzerosInJacobian,jacobian)
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22982  * self.u[0].femSpace.grad_psi,
22983  * self.u[0].femSpace.psi,
22984  * self.u[0].femSpace.grad_psi, # <<<<<<<<<<<<<<
22985  * self.mesh.elementDiametersArray,
22986  * self.q[('cfl',0)],
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23001  * self.u[0].femSpace.psi,
23002  * self.u[0].femSpace.grad_psi,
23003  * self.mesh.elementDiametersArray, # <<<<<<<<<<<<<<
23004  * self.q[('cfl',0)],
23005  * self.shockCapturing.shockCapturingFactor,
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23014  * self.u[0].femSpace.grad_psi,
23015  * self.mesh.elementDiametersArray,
23016  * self.q[('cfl',0)], # <<<<<<<<<<<<<<
23017  * self.shockCapturing.shockCapturingFactor,
23018  * self.coefficients.sc_uref,
23019  */
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23027  * self.mesh.elementDiametersArray,
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23029  * self.shockCapturing.shockCapturingFactor, # <<<<<<<<<<<<<<
23030  * self.coefficients.sc_uref,
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23040  * self.q[('cfl',0)],
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23042  * self.coefficients.sc_uref, # <<<<<<<<<<<<<<
23043  * self.coefficients.sc_beta,
23044  * self.coefficients.useMetrics,
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23055  * self.coefficients.sc_beta, # <<<<<<<<<<<<<<
23056  * self.coefficients.useMetrics,
23057  * #element boundary
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23067  * self.coefficients.sc_beta,
23068  * self.coefficients.useMetrics, # <<<<<<<<<<<<<<
23069  * #element boundary
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23082  * self.u[0].femSpace.elementMaps.grad_psi_trace,
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23101  * #element boundary
23102  * self.u[0].femSpace.elementMaps.psi_trace,
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23104  * self.elementBoundaryQuadratureWeights[('u',0)],
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23123  * self.u[0].femSpace.elementMaps.psi_trace,
23124  * self.u[0].femSpace.elementMaps.grad_psi_trace,
23125  * self.elementBoundaryQuadratureWeights[('u',0)], # <<<<<<<<<<<<<<
23126  * self.u[0].femSpace.psi_trace,
23127  * self.u[0].femSpace.grad_psi_trace,
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23139  * self.u[0].femSpace.grad_psi_trace,
23140  * self.u[0].femSpace.psi_trace,
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23156  * self.u[0].femSpace.psi_trace,
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23158  * self.u[0].femSpace.psi_trace,
23159  * self.u[0].femSpace.grad_psi_trace,
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23177  * self.u[0].femSpace.grad_psi_trace,
23178  * self.u[0].femSpace.elementMaps.boundaryNormals,
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23194  * self.u[0].femSpace.psi_trace,
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23196  * self.u[0].femSpace.elementMaps.boundaryNormals,
23197  * self.u[0].femSpace.elementMaps.boundaryJacobians,
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23215  * self.u[0].femSpace.elementMaps.boundaryJacobians,
23216  * self.mesh.nElements_global,
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23233  /* "ADR.pyx":1039
23234  * self.u[0].femSpace.grad_psi_trace,
23235  * self.u[0].femSpace.elementMaps.boundaryNormals,
23236  * self.u[0].femSpace.elementMaps.boundaryJacobians, # <<<<<<<<<<<<<<
23237  * self.mesh.nElements_global,
23238  * self.u[0].femSpace.dofMap.l2g,
23239  */
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23256  * self.u[0].femSpace.elementMaps.boundaryNormals,
23257  * self.u[0].femSpace.elementMaps.boundaryJacobians,
23258  * self.mesh.nElements_global, # <<<<<<<<<<<<<<
23259  * self.u[0].femSpace.dofMap.l2g,
23260  * self.u[0].dof,
23261  */
23262  __pyx_t_28 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_mesh); if (unlikely(!__pyx_t_28)) __PYX_ERR(0, 1040, __pyx_L1_error)
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23269  * self.u[0].femSpace.elementMaps.boundaryJacobians,
23270  * self.mesh.nElements_global,
23271  * self.u[0].femSpace.dofMap.l2g, # <<<<<<<<<<<<<<
23272  * self.u[0].dof,
23273  * self.coefficients.sdInfo[(0,0)][0],
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23288  __Pyx_DECREF(__pyx_t_30); __pyx_t_30 = 0;
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23291  * self.mesh.nElements_global,
23292  * self.u[0].femSpace.dofMap.l2g,
23293  * self.u[0].dof, # <<<<<<<<<<<<<<
23294  * self.coefficients.sdInfo[(0,0)][0],
23295  * self.coefficients.sdInfo[(0,0)][1],
23296  */
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23298  __Pyx_GOTREF(__pyx_t_30);
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23304  __Pyx_DECREF(__pyx_t_31); __pyx_t_31 = 0;
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23307  * self.u[0].femSpace.dofMap.l2g,
23308  * self.u[0].dof,
23309  * self.coefficients.sdInfo[(0,0)][0], # <<<<<<<<<<<<<<
23310  * self.coefficients.sdInfo[(0,0)][1],
23311  * self.q[('a',0,0)],
23312  */
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23323  __Pyx_DECREF(__pyx_t_31); __pyx_t_31 = 0;
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23326  * self.u[0].dof,
23327  * self.coefficients.sdInfo[(0,0)][0],
23328  * self.coefficients.sdInfo[(0,0)][1], # <<<<<<<<<<<<<<
23329  * self.q[('a',0,0)],
23330  * self.q[('df',0,0)],
23331  */
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23345  * self.coefficients.sdInfo[(0,0)][0],
23346  * self.coefficients.sdInfo[(0,0)][1],
23347  * self.q[('a',0,0)], # <<<<<<<<<<<<<<
23348  * self.q[('df',0,0)],
23349  * self.q[('r',0)],
23350  */
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23358  * self.coefficients.sdInfo[(0,0)][1],
23359  * self.q[('a',0,0)],
23360  * self.q[('df',0,0)], # <<<<<<<<<<<<<<
23361  * self.q[('r',0)],
23362  * self.shockCapturing.lag,
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23371  * self.q[('a',0,0)],
23372  * self.q[('df',0,0)],
23373  * self.q[('r',0)], # <<<<<<<<<<<<<<
23374  * self.shockCapturing.lag,
23375  * self.shockCapturing.shockCapturingFactor,
23376  */
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23381  __Pyx_DECREF(__pyx_t_31); __pyx_t_31 = 0;
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23385  * self.q[('r',0)],
23386  * self.shockCapturing.lag, # <<<<<<<<<<<<<<
23387  * self.shockCapturing.shockCapturingFactor,
23388  * self.shockCapturing.numDiff[0],
23389  */
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23394  __Pyx_DECREF(__pyx_t_31); __pyx_t_31 = 0;
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23397  * self.q[('r',0)],
23398  * self.shockCapturing.lag,
23399  * self.shockCapturing.shockCapturingFactor, # <<<<<<<<<<<<<<
23400  * self.shockCapturing.numDiff[0],
23401  * self.shockCapturing.numDiff_last[0],
23402  */
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23410  * self.shockCapturing.lag,
23411  * self.shockCapturing.shockCapturingFactor,
23412  * self.shockCapturing.numDiff[0], # <<<<<<<<<<<<<<
23413  * self.shockCapturing.numDiff_last[0],
23414  * self.csrRowIndeces[(0,0)],
23415  */
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23426  * self.shockCapturing.shockCapturingFactor,
23427  * self.shockCapturing.numDiff[0],
23428  * self.shockCapturing.numDiff_last[0], # <<<<<<<<<<<<<<
23429  * self.csrRowIndeces[(0,0)],
23430  * self.csrColumnOffsets[(0,0)],
23431  */
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23442  * self.shockCapturing.numDiff[0],
23443  * self.shockCapturing.numDiff_last[0],
23444  * self.csrRowIndeces[(0,0)], # <<<<<<<<<<<<<<
23445  * self.csrColumnOffsets[(0,0)],
23446  * jacobian,
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23455  * self.shockCapturing.numDiff_last[0],
23456  * self.csrRowIndeces[(0,0)],
23457  * self.csrColumnOffsets[(0,0)], # <<<<<<<<<<<<<<
23458  * jacobian,
23459  * self.mesh.nExteriorElementBoundaries_global,
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23468  * self.csrColumnOffsets[(0,0)],
23469  * jacobian,
23470  * self.mesh.nExteriorElementBoundaries_global, # <<<<<<<<<<<<<<
23471  * self.mesh.exteriorElementBoundariesArray,
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23481  * jacobian,
23482  * self.mesh.nExteriorElementBoundaries_global,
23483  * self.mesh.exteriorElementBoundariesArray, # <<<<<<<<<<<<<<
23484  * self.mesh.elementBoundaryElementsArray,
23485  * self.mesh.elementBoundaryLocalElementBoundariesArray,
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23495  * self.mesh.exteriorElementBoundariesArray,
23496  * self.mesh.elementBoundaryElementsArray, # <<<<<<<<<<<<<<
23497  * self.mesh.elementBoundaryLocalElementBoundariesArray,
23498  * self.ebqe[('a',0,0)],
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23508  * self.mesh.elementBoundaryElementsArray,
23509  * self.mesh.elementBoundaryLocalElementBoundariesArray, # <<<<<<<<<<<<<<
23510  * self.ebqe[('a',0,0)],
23511  * self.ebqe[('df',0,0)],
23512  */
23513  __pyx_t_40 = __Pyx_PyObject_GetAttrStr(__pyx_v_self, __pyx_n_s_mesh); if (unlikely(!__pyx_t_40)) __PYX_ERR(0, 1058, __pyx_L1_error)
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24099  * self.nonlinear_function_jacobian_evaluations += 1
24100  * return jacobian
24101  * def calculateElementQuadrature(self): # <<<<<<<<<<<<<<
24102  * """
24103  * Calculate the physical location and weights of the quadrature rules
24104  */
24105 
24106 /* Python wrapper */
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25303  * self.ebqe['x'])
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25385  * self.u[0].femSpace.elementMaps.getValuesGlobalExteriorTrace(self.elementBoundaryQuadraturePoints,
25386  * self.ebqe['x'])
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25397  * self.ebqe['x'])
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25399  * self.nElementBoundaryQuadraturePoints_elementBoundary, # <<<<<<<<<<<<<<
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25421  * self.ebqe[('x')],
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25510  * self.u[0].femSpace.elementMaps.getValuesGlobalExteriorTrace(self.elementBoundaryQuadraturePoints,
25511  * self.ebqe['x'])
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25969  *
25970  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<<
25971  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
25972  * raise ValueError(u"ndarray is not Fortran contiguous")
25973  */
25974  if (__pyx_t_1) {
25975 
25976  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":222
25977  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
25978  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
25979  * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<<
25980  *
25981  * info.buf = PyArray_DATA(self)
25982  */
25983  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__94, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 222, __pyx_L1_error)
25984  __Pyx_GOTREF(__pyx_t_3);
25985  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
25986  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
25987  __PYX_ERR(1, 222, __pyx_L1_error)
25988 
25989  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":220
25990  * raise ValueError(u"ndarray is not C contiguous")
25991  *
25992  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS) # <<<<<<<<<<<<<<
25993  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
25994  * raise ValueError(u"ndarray is not Fortran contiguous")
25995  */
25996  }
25997 
25998  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":224
25999  * raise ValueError(u"ndarray is not Fortran contiguous")
26000  *
26001  * info.buf = PyArray_DATA(self) # <<<<<<<<<<<<<<
26002  * info.ndim = ndim
26003  * if copy_shape:
26004  */
26005  __pyx_v_info->buf = PyArray_DATA(__pyx_v_self);
26006 
26007  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":225
26008  *
26009  * info.buf = PyArray_DATA(self)
26010  * info.ndim = ndim # <<<<<<<<<<<<<<
26011  * if copy_shape:
26012  * # Allocate new buffer for strides and shape info.
26013  */
26014  __pyx_v_info->ndim = __pyx_v_ndim;
26015 
26016  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":226
26017  * info.buf = PyArray_DATA(self)
26018  * info.ndim = ndim
26019  * if copy_shape: # <<<<<<<<<<<<<<
26020  * # Allocate new buffer for strides and shape info.
26021  * # This is allocated as one block, strides first.
26022  */
26023  __pyx_t_1 = (__pyx_v_copy_shape != 0);
26024  if (__pyx_t_1) {
26025 
26026  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":229
26027  * # Allocate new buffer for strides and shape info.
26028  * # This is allocated as one block, strides first.
26029  * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2) # <<<<<<<<<<<<<<
26030  * info.shape = info.strides + ndim
26031  * for i in range(ndim):
26032  */
26033  __pyx_v_info->strides = ((Py_ssize_t *)malloc((((sizeof(Py_ssize_t)) * ((size_t)__pyx_v_ndim)) * 2)));
26034 
26035  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":230
26036  * # This is allocated as one block, strides first.
26037  * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2)
26038  * info.shape = info.strides + ndim # <<<<<<<<<<<<<<
26039  * for i in range(ndim):
26040  * info.strides[i] = PyArray_STRIDES(self)[i]
26041  */
26042  __pyx_v_info->shape = (__pyx_v_info->strides + __pyx_v_ndim);
26043 
26044  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":231
26045  * info.strides = <Py_ssize_t*>stdlib.malloc(sizeof(Py_ssize_t) * <size_t>ndim * 2)
26046  * info.shape = info.strides + ndim
26047  * for i in range(ndim): # <<<<<<<<<<<<<<
26048  * info.strides[i] = PyArray_STRIDES(self)[i]
26049  * info.shape[i] = PyArray_DIMS(self)[i]
26050  */
26051  __pyx_t_4 = __pyx_v_ndim;
26052  for (__pyx_t_5 = 0; __pyx_t_5 < __pyx_t_4; __pyx_t_5+=1) {
26053  __pyx_v_i = __pyx_t_5;
26054 
26055  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":232
26056  * info.shape = info.strides + ndim
26057  * for i in range(ndim):
26058  * info.strides[i] = PyArray_STRIDES(self)[i] # <<<<<<<<<<<<<<
26059  * info.shape[i] = PyArray_DIMS(self)[i]
26060  * else:
26061  */
26062  (__pyx_v_info->strides[__pyx_v_i]) = (PyArray_STRIDES(__pyx_v_self)[__pyx_v_i]);
26063 
26064  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":233
26065  * for i in range(ndim):
26066  * info.strides[i] = PyArray_STRIDES(self)[i]
26067  * info.shape[i] = PyArray_DIMS(self)[i] # <<<<<<<<<<<<<<
26068  * else:
26069  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
26070  */
26071  (__pyx_v_info->shape[__pyx_v_i]) = (PyArray_DIMS(__pyx_v_self)[__pyx_v_i]);
26072  }
26073 
26074  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":226
26075  * info.buf = PyArray_DATA(self)
26076  * info.ndim = ndim
26077  * if copy_shape: # <<<<<<<<<<<<<<
26078  * # Allocate new buffer for strides and shape info.
26079  * # This is allocated as one block, strides first.
26080  */
26081  goto __pyx_L11;
26082  }
26083 
26084  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":235
26085  * info.shape[i] = PyArray_DIMS(self)[i]
26086  * else:
26087  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self) # <<<<<<<<<<<<<<
26088  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
26089  * info.suboffsets = NULL
26090  */
26091  /*else*/ {
26092  __pyx_v_info->strides = ((Py_ssize_t *)PyArray_STRIDES(__pyx_v_self));
26093 
26094  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":236
26095  * else:
26096  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
26097  * info.shape = <Py_ssize_t*>PyArray_DIMS(self) # <<<<<<<<<<<<<<
26098  * info.suboffsets = NULL
26099  * info.itemsize = PyArray_ITEMSIZE(self)
26100  */
26101  __pyx_v_info->shape = ((Py_ssize_t *)PyArray_DIMS(__pyx_v_self));
26102  }
26103  __pyx_L11:;
26104 
26105  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":237
26106  * info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
26107  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
26108  * info.suboffsets = NULL # <<<<<<<<<<<<<<
26109  * info.itemsize = PyArray_ITEMSIZE(self)
26110  * info.readonly = not PyArray_ISWRITEABLE(self)
26111  */
26112  __pyx_v_info->suboffsets = NULL;
26113 
26114  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":238
26115  * info.shape = <Py_ssize_t*>PyArray_DIMS(self)
26116  * info.suboffsets = NULL
26117  * info.itemsize = PyArray_ITEMSIZE(self) # <<<<<<<<<<<<<<
26118  * info.readonly = not PyArray_ISWRITEABLE(self)
26119  *
26120  */
26121  __pyx_v_info->itemsize = PyArray_ITEMSIZE(__pyx_v_self);
26122 
26123  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":239
26124  * info.suboffsets = NULL
26125  * info.itemsize = PyArray_ITEMSIZE(self)
26126  * info.readonly = not PyArray_ISWRITEABLE(self) # <<<<<<<<<<<<<<
26127  *
26128  * cdef int t
26129  */
26130  __pyx_v_info->readonly = (!(PyArray_ISWRITEABLE(__pyx_v_self) != 0));
26131 
26132  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":242
26133  *
26134  * cdef int t
26135  * cdef char* f = NULL # <<<<<<<<<<<<<<
26136  * cdef dtype descr = self.descr
26137  * cdef int offset
26138  */
26139  __pyx_v_f = NULL;
26140 
26141  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":243
26142  * cdef int t
26143  * cdef char* f = NULL
26144  * cdef dtype descr = self.descr # <<<<<<<<<<<<<<
26145  * cdef int offset
26146  *
26147  */
26148  __pyx_t_3 = ((PyObject *)__pyx_v_self->descr);
26149  __Pyx_INCREF(__pyx_t_3);
26150  __pyx_v_descr = ((PyArray_Descr *)__pyx_t_3);
26151  __pyx_t_3 = 0;
26152 
26153  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":246
26154  * cdef int offset
26155  *
26156  * cdef bint hasfields = PyDataType_HASFIELDS(descr) # <<<<<<<<<<<<<<
26157  *
26158  * if not hasfields and not copy_shape:
26159  */
26160  __pyx_v_hasfields = PyDataType_HASFIELDS(__pyx_v_descr);
26161 
26162  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":248
26163  * cdef bint hasfields = PyDataType_HASFIELDS(descr)
26164  *
26165  * if not hasfields and not copy_shape: # <<<<<<<<<<<<<<
26166  * # do not call releasebuffer
26167  * info.obj = None
26168  */
26169  __pyx_t_2 = ((!(__pyx_v_hasfields != 0)) != 0);
26170  if (__pyx_t_2) {
26171  } else {
26172  __pyx_t_1 = __pyx_t_2;
26173  goto __pyx_L15_bool_binop_done;
26174  }
26175  __pyx_t_2 = ((!(__pyx_v_copy_shape != 0)) != 0);
26176  __pyx_t_1 = __pyx_t_2;
26177  __pyx_L15_bool_binop_done:;
26178  if (__pyx_t_1) {
26179 
26180  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":250
26181  * if not hasfields and not copy_shape:
26182  * # do not call releasebuffer
26183  * info.obj = None # <<<<<<<<<<<<<<
26184  * else:
26185  * # need to call releasebuffer
26186  */
26187  __Pyx_INCREF(Py_None);
26188  __Pyx_GIVEREF(Py_None);
26189  __Pyx_GOTREF(__pyx_v_info->obj);
26190  __Pyx_DECREF(__pyx_v_info->obj);
26191  __pyx_v_info->obj = Py_None;
26192 
26193  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":248
26194  * cdef bint hasfields = PyDataType_HASFIELDS(descr)
26195  *
26196  * if not hasfields and not copy_shape: # <<<<<<<<<<<<<<
26197  * # do not call releasebuffer
26198  * info.obj = None
26199  */
26200  goto __pyx_L14;
26201  }
26202 
26203  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":253
26204  * else:
26205  * # need to call releasebuffer
26206  * info.obj = self # <<<<<<<<<<<<<<
26207  *
26208  * if not hasfields:
26209  */
26210  /*else*/ {
26211  __Pyx_INCREF(((PyObject *)__pyx_v_self));
26212  __Pyx_GIVEREF(((PyObject *)__pyx_v_self));
26213  __Pyx_GOTREF(__pyx_v_info->obj);
26214  __Pyx_DECREF(__pyx_v_info->obj);
26215  __pyx_v_info->obj = ((PyObject *)__pyx_v_self);
26216  }
26217  __pyx_L14:;
26218 
26219  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":255
26220  * info.obj = self
26221  *
26222  * if not hasfields: # <<<<<<<<<<<<<<
26223  * t = descr.type_num
26224  * if ((descr.byteorder == c'>' and little_endian) or
26225  */
26226  __pyx_t_1 = ((!(__pyx_v_hasfields != 0)) != 0);
26227  if (__pyx_t_1) {
26228 
26229  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":256
26230  *
26231  * if not hasfields:
26232  * t = descr.type_num # <<<<<<<<<<<<<<
26233  * if ((descr.byteorder == c'>' and little_endian) or
26234  * (descr.byteorder == c'<' and not little_endian)):
26235  */
26236  __pyx_t_4 = __pyx_v_descr->type_num;
26237  __pyx_v_t = __pyx_t_4;
26238 
26239  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":257
26240  * if not hasfields:
26241  * t = descr.type_num
26242  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
26243  * (descr.byteorder == c'<' and not little_endian)):
26244  * raise ValueError(u"Non-native byte order not supported")
26245  */
26246  __pyx_t_2 = ((__pyx_v_descr->byteorder == '>') != 0);
26247  if (!__pyx_t_2) {
26248  goto __pyx_L20_next_or;
26249  } else {
26250  }
26251  __pyx_t_2 = (__pyx_v_little_endian != 0);
26252  if (!__pyx_t_2) {
26253  } else {
26254  __pyx_t_1 = __pyx_t_2;
26255  goto __pyx_L19_bool_binop_done;
26256  }
26257  __pyx_L20_next_or:;
26258 
26259  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":258
26260  * t = descr.type_num
26261  * if ((descr.byteorder == c'>' and little_endian) or
26262  * (descr.byteorder == c'<' and not little_endian)): # <<<<<<<<<<<<<<
26263  * raise ValueError(u"Non-native byte order not supported")
26264  * if t == NPY_BYTE: f = "b"
26265  */
26266  __pyx_t_2 = ((__pyx_v_descr->byteorder == '<') != 0);
26267  if (__pyx_t_2) {
26268  } else {
26269  __pyx_t_1 = __pyx_t_2;
26270  goto __pyx_L19_bool_binop_done;
26271  }
26272  __pyx_t_2 = ((!(__pyx_v_little_endian != 0)) != 0);
26273  __pyx_t_1 = __pyx_t_2;
26274  __pyx_L19_bool_binop_done:;
26275 
26276  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":257
26277  * if not hasfields:
26278  * t = descr.type_num
26279  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
26280  * (descr.byteorder == c'<' and not little_endian)):
26281  * raise ValueError(u"Non-native byte order not supported")
26282  */
26283  if (__pyx_t_1) {
26284 
26285  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":259
26286  * if ((descr.byteorder == c'>' and little_endian) or
26287  * (descr.byteorder == c'<' and not little_endian)):
26288  * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<<
26289  * if t == NPY_BYTE: f = "b"
26290  * elif t == NPY_UBYTE: f = "B"
26291  */
26292  __pyx_t_3 = __Pyx_PyObject_Call(__pyx_builtin_ValueError, __pyx_tuple__95, NULL); if (unlikely(!__pyx_t_3)) __PYX_ERR(1, 259, __pyx_L1_error)
26293  __Pyx_GOTREF(__pyx_t_3);
26294  __Pyx_Raise(__pyx_t_3, 0, 0, 0);
26295  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
26296  __PYX_ERR(1, 259, __pyx_L1_error)
26297 
26298  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":257
26299  * if not hasfields:
26300  * t = descr.type_num
26301  * if ((descr.byteorder == c'>' and little_endian) or # <<<<<<<<<<<<<<
26302  * (descr.byteorder == c'<' and not little_endian)):
26303  * raise ValueError(u"Non-native byte order not supported")
26304  */
26305  }
26306 
26307  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":260
26308  * (descr.byteorder == c'<' and not little_endian)):
26309  * raise ValueError(u"Non-native byte order not supported")
26310  * if t == NPY_BYTE: f = "b" # <<<<<<<<<<<<<<
26311  * elif t == NPY_UBYTE: f = "B"
26312  * elif t == NPY_SHORT: f = "h"
26313  */
26314  switch (__pyx_v_t) {
26315  case NPY_BYTE:
26316  __pyx_v_f = ((char *)"b");
26317  break;
26318 
26319  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":261
26320  * raise ValueError(u"Non-native byte order not supported")
26321  * if t == NPY_BYTE: f = "b"
26322  * elif t == NPY_UBYTE: f = "B" # <<<<<<<<<<<<<<
26323  * elif t == NPY_SHORT: f = "h"
26324  * elif t == NPY_USHORT: f = "H"
26325  */
26326  case NPY_UBYTE:
26327  __pyx_v_f = ((char *)"B");
26328  break;
26329 
26330  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":262
26331  * if t == NPY_BYTE: f = "b"
26332  * elif t == NPY_UBYTE: f = "B"
26333  * elif t == NPY_SHORT: f = "h" # <<<<<<<<<<<<<<
26334  * elif t == NPY_USHORT: f = "H"
26335  * elif t == NPY_INT: f = "i"
26336  */
26337  case NPY_SHORT:
26338  __pyx_v_f = ((char *)"h");
26339  break;
26340 
26341  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":263
26342  * elif t == NPY_UBYTE: f = "B"
26343  * elif t == NPY_SHORT: f = "h"
26344  * elif t == NPY_USHORT: f = "H" # <<<<<<<<<<<<<<
26345  * elif t == NPY_INT: f = "i"
26346  * elif t == NPY_UINT: f = "I"
26347  */
26348  case NPY_USHORT:
26349  __pyx_v_f = ((char *)"H");
26350  break;
26351 
26352  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":264
26353  * elif t == NPY_SHORT: f = "h"
26354  * elif t == NPY_USHORT: f = "H"
26355  * elif t == NPY_INT: f = "i" # <<<<<<<<<<<<<<
26356  * elif t == NPY_UINT: f = "I"
26357  * elif t == NPY_LONG: f = "l"
26358  */
26359  case NPY_INT:
26360  __pyx_v_f = ((char *)"i");
26361  break;
26362 
26363  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":265
26364  * elif t == NPY_USHORT: f = "H"
26365  * elif t == NPY_INT: f = "i"
26366  * elif t == NPY_UINT: f = "I" # <<<<<<<<<<<<<<
26367  * elif t == NPY_LONG: f = "l"
26368  * elif t == NPY_ULONG: f = "L"
26369  */
26370  case NPY_UINT:
26371  __pyx_v_f = ((char *)"I");
26372  break;
26373 
26374  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":266
26375  * elif t == NPY_INT: f = "i"
26376  * elif t == NPY_UINT: f = "I"
26377  * elif t == NPY_LONG: f = "l" # <<<<<<<<<<<<<<
26378  * elif t == NPY_ULONG: f = "L"
26379  * elif t == NPY_LONGLONG: f = "q"
26380  */
26381  case NPY_LONG:
26382  __pyx_v_f = ((char *)"l");
26383  break;
26384 
26385  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":267
26386  * elif t == NPY_UINT: f = "I"
26387  * elif t == NPY_LONG: f = "l"
26388  * elif t == NPY_ULONG: f = "L" # <<<<<<<<<<<<<<
26389  * elif t == NPY_LONGLONG: f = "q"
26390  * elif t == NPY_ULONGLONG: f = "Q"
26391  */
26392  case NPY_ULONG:
26393  __pyx_v_f = ((char *)"L");
26394  break;
26395 
26396  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":268
26397  * elif t == NPY_LONG: f = "l"
26398  * elif t == NPY_ULONG: f = "L"
26399  * elif t == NPY_LONGLONG: f = "q" # <<<<<<<<<<<<<<
26400  * elif t == NPY_ULONGLONG: f = "Q"
26401  * elif t == NPY_FLOAT: f = "f"
26402  */
26403  case NPY_LONGLONG:
26404  __pyx_v_f = ((char *)"q");
26405  break;
26406 
26407  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":269
26408  * elif t == NPY_ULONG: f = "L"
26409  * elif t == NPY_LONGLONG: f = "q"
26410  * elif t == NPY_ULONGLONG: f = "Q" # <<<<<<<<<<<<<<
26411  * elif t == NPY_FLOAT: f = "f"
26412  * elif t == NPY_DOUBLE: f = "d"
26413  */
26414  case NPY_ULONGLONG:
26415  __pyx_v_f = ((char *)"Q");
26416  break;
26417 
26418  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":270
26419  * elif t == NPY_LONGLONG: f = "q"
26420  * elif t == NPY_ULONGLONG: f = "Q"
26421  * elif t == NPY_FLOAT: f = "f" # <<<<<<<<<<<<<<
26422  * elif t == NPY_DOUBLE: f = "d"
26423  * elif t == NPY_LONGDOUBLE: f = "g"
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26425  case NPY_FLOAT:
26426  __pyx_v_f = ((char *)"f");
26427  break;
26428 
26429  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":271
26430  * elif t == NPY_ULONGLONG: f = "Q"
26431  * elif t == NPY_FLOAT: f = "f"
26432  * elif t == NPY_DOUBLE: f = "d" # <<<<<<<<<<<<<<
26433  * elif t == NPY_LONGDOUBLE: f = "g"
26434  * elif t == NPY_CFLOAT: f = "Zf"
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26436  case NPY_DOUBLE:
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26438  break;
26439 
26440  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":272
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26442  * elif t == NPY_DOUBLE: f = "d"
26443  * elif t == NPY_LONGDOUBLE: f = "g" # <<<<<<<<<<<<<<
26444  * elif t == NPY_CFLOAT: f = "Zf"
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26451  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":273
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26460  break;
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26462  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":274
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26464  * elif t == NPY_CFLOAT: f = "Zf"
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28015  *
28016  * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
28017  * try:
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28021 static CYTHON_INLINE int __pyx_f_5numpy_import_umath(void) {
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28028  PyObject *__pyx_t_5 = NULL;
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28041  {
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28046  __Pyx_XGOTREF(__pyx_t_2);
28047  __Pyx_XGOTREF(__pyx_t_3);
28048  /*try:*/ {
28049 
28050  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":993
28051  * cdef inline int import_umath() except -1:
28052  * try:
28053  * _import_umath() # <<<<<<<<<<<<<<
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28061  * cdef inline int import_umath() except -1:
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28071  __pyx_L3_error:;
28072  __Pyx_PyThreadState_assign
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28074  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":994
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28076  * _import_umath()
28077  * except Exception: # <<<<<<<<<<<<<<
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28079  *
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28081  __pyx_t_4 = __Pyx_PyErr_ExceptionMatches(((PyObject *)(&((PyTypeObject*)PyExc_Exception)[0])));
28082  if (__pyx_t_4) {
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28089  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":995
28090  * _import_umath()
28091  * except Exception:
28092  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
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28103  __pyx_L5_except_error:;
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28106  *
28107  * cdef inline int import_umath() except -1:
28108  * try: # <<<<<<<<<<<<<<
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28112  __Pyx_PyThreadState_assign
28113  __Pyx_XGIVEREF(__pyx_t_1);
28114  __Pyx_XGIVEREF(__pyx_t_2);
28115  __Pyx_XGIVEREF(__pyx_t_3);
28116  __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3);
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28118  __pyx_L10_try_end:;
28119  }
28120 
28121  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":991
28122  * raise ImportError("numpy.core.multiarray failed to import")
28123  *
28124  * cdef inline int import_umath() except -1: # <<<<<<<<<<<<<<
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28128 
28129  /* function exit code */
28130  __pyx_r = 0;
28131  goto __pyx_L0;
28132  __pyx_L1_error:;
28133  __Pyx_XDECREF(__pyx_t_5);
28134  __Pyx_XDECREF(__pyx_t_6);
28135  __Pyx_XDECREF(__pyx_t_7);
28136  __Pyx_XDECREF(__pyx_t_8);
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28146  *
28147  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
28148  * try:
28149  * _import_umath()
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28167  * cdef inline int import_ufunc() except -1:
28168  * try: # <<<<<<<<<<<<<<
28169  * _import_umath()
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28172  {
28173  __Pyx_PyThreadState_declare
28174  __Pyx_PyThreadState_assign
28175  __Pyx_ExceptionSave(&__pyx_t_1, &__pyx_t_2, &__pyx_t_3);
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28177  __Pyx_XGOTREF(__pyx_t_2);
28178  __Pyx_XGOTREF(__pyx_t_3);
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28182  * cdef inline int import_ufunc() except -1:
28183  * try:
28184  * _import_umath() # <<<<<<<<<<<<<<
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28192  * cdef inline int import_ufunc() except -1:
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28202  __pyx_L3_error:;
28203  __Pyx_PyThreadState_assign
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28208  * except Exception: # <<<<<<<<<<<<<<
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28217  __Pyx_GOTREF(__pyx_t_7);
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28220  * _import_umath()
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28222  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
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28230  goto __pyx_L5_except_error;
28231  __pyx_L5_except_error:;
28232 
28233  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":998
28234  *
28235  * cdef inline int import_ufunc() except -1:
28236  * try: # <<<<<<<<<<<<<<
28237  * _import_umath()
28238  * except Exception:
28239  */
28240  __Pyx_PyThreadState_assign
28241  __Pyx_XGIVEREF(__pyx_t_1);
28242  __Pyx_XGIVEREF(__pyx_t_2);
28243  __Pyx_XGIVEREF(__pyx_t_3);
28244  __Pyx_ExceptionReset(__pyx_t_1, __pyx_t_2, __pyx_t_3);
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28246  __pyx_L10_try_end:;
28247  }
28248 
28249  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":997
28250  * raise ImportError("numpy.core.umath failed to import")
28251  *
28252  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
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28256 
28257  /* function exit code */
28258  __pyx_r = 0;
28259  goto __pyx_L0;
28260  __pyx_L1_error:;
28261  __Pyx_XDECREF(__pyx_t_5);
28262  __Pyx_XDECREF(__pyx_t_6);
28263  __Pyx_XDECREF(__pyx_t_7);
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28286 
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28301  (*Py_TYPE(o)->tp_free)(o);
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28305  {"calculateResidual", (PyCFunction)__pyx_pw_3ADR_3ADR_5calculateResidual, METH_VARARGS|METH_KEYWORDS, 0},
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28320  0, /*tp_compare*/
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28326  0, /*tp_as_number*/
28327  0, /*tp_as_sequence*/
28328  0, /*tp_as_mapping*/
28329  0, /*tp_hash*/
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28331  0, /*tp_str*/
28332  0, /*tp_getattro*/
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28344  0, /*tp_members*/
28345  0, /*tp_getset*/
28346  0, /*tp_base*/
28347  0, /*tp_dict*/
28348  0, /*tp_descr_get*/
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28354  0, /*tp_free*/
28355  0, /*tp_is_gc*/
28356  0, /*tp_bases*/
28357  0, /*tp_mro*/
28358  0, /*tp_cache*/
28359  0, /*tp_subclasses*/
28360  0, /*tp_weaklist*/
28361  0, /*tp_del*/
28362  0, /*tp_version_tag*/
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28370 };
28371 
28372 #if PY_MAJOR_VERSION >= 3
28373 static struct PyModuleDef __pyx_moduledef = {
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28397  {&__pyx_n_s_Archiver, __pyx_k_Archiver, sizeof(__pyx_k_Archiver), 0, 0, 1, 1},
28398  {&__pyx_kp_s_Building_time_integration_object, __pyx_k_Building_time_integration_object, sizeof(__pyx_k_Building_time_integration_object), 0, 0, 1, 0},
28399  {&__pyx_n_s_C0_AffineLinearOnSimplexWithNoda, __pyx_k_C0_AffineLinearOnSimplexWithNoda, sizeof(__pyx_k_C0_AffineLinearOnSimplexWithNoda), 0, 0, 1, 1},
28400  {&__pyx_n_s_CT_sge, __pyx_k_CT_sge, sizeof(__pyx_k_CT_sge), 0, 0, 1, 1},
28401  {&__pyx_kp_s_Calculating_numerical_quadrature, __pyx_k_Calculating_numerical_quadrature, sizeof(__pyx_k_Calculating_numerical_quadrature), 0, 0, 1, 0},
28402  {&__pyx_n_s_Coefficients, __pyx_k_Coefficients, sizeof(__pyx_k_Coefficients), 0, 0, 1, 1},
28403  {&__pyx_n_s_Coefficients___init, __pyx_k_Coefficients___init, sizeof(__pyx_k_Coefficients___init), 0, 0, 1, 1},
28404  {&__pyx_n_s_Coefficients_evaluate, __pyx_k_Coefficients_evaluate, sizeof(__pyx_k_Coefficients_evaluate), 0, 0, 1, 1},
28405  {&__pyx_n_s_Coefficients_initializeElementBo, __pyx_k_Coefficients_initializeElementBo, sizeof(__pyx_k_Coefficients_initializeElementBo), 0, 0, 1, 1},
28406  {&__pyx_n_s_Coefficients_initializeElementQu, __pyx_k_Coefficients_initializeElementQu, sizeof(__pyx_k_Coefficients_initializeElementQu), 0, 0, 1, 1},
28407  {&__pyx_n_s_Coefficients_initializeGlobalExt, __pyx_k_Coefficients_initializeGlobalExt, sizeof(__pyx_k_Coefficients_initializeGlobalExt), 0, 0, 1, 1},
28408  {&__pyx_kp_s_Coefficients_of_linear_ADR_equa, __pyx_k_Coefficients_of_linear_ADR_equa, sizeof(__pyx_k_Coefficients_of_linear_ADR_equa), 0, 0, 1, 0},
28409  {&__pyx_n_s_Comm, __pyx_k_Comm, sizeof(__pyx_k_Comm), 0, 0, 1, 1},
28410  {&__pyx_n_s_CompKernelFlag, __pyx_k_CompKernelFlag, sizeof(__pyx_k_CompKernelFlag), 0, 0, 1, 1},
28411  {&__pyx_n_s_DOFBoundaryConditions, __pyx_k_DOFBoundaryConditions, sizeof(__pyx_k_DOFBoundaryConditions), 0, 0, 1, 1},
28412  {&__pyx_n_s_FluxBoundaryConditions, __pyx_k_FluxBoundaryConditions, sizeof(__pyx_k_FluxBoundaryConditions), 0, 0, 1, 1},
28413  {&__pyx_kp_u_Format_string_allocated_too_shor, __pyx_k_Format_string_allocated_too_shor, sizeof(__pyx_k_Format_string_allocated_too_shor), 0, 1, 0, 0},
28414  {&__pyx_kp_u_Format_string_allocated_too_shor_2, __pyx_k_Format_string_allocated_too_shor_2, sizeof(__pyx_k_Format_string_allocated_too_shor_2), 0, 1, 0, 0},
28415  {&__pyx_kp_s_Global_residual, __pyx_k_Global_residual, sizeof(__pyx_k_Global_residual), 0, 0, 1, 0},
28416  {&__pyx_n_s_Hess, __pyx_k_Hess, sizeof(__pyx_k_Hess), 0, 0, 1, 1},
28417  {&__pyx_n_s_I, __pyx_k_I, sizeof(__pyx_k_I), 0, 0, 1, 1},
28418  {&__pyx_n_s_ImportError, __pyx_k_ImportError, sizeof(__pyx_k_ImportError), 0, 0, 1, 1},
28419  {&__pyx_kp_s_Jacobian, __pyx_k_Jacobian, sizeof(__pyx_k_Jacobian), 0, 0, 1, 0},
28420  {&__pyx_n_s_L2projectEvaluate, __pyx_k_L2projectEvaluate, sizeof(__pyx_k_L2projectEvaluate), 0, 0, 1, 1},
28421  {&__pyx_n_s_LevelModel, __pyx_k_LevelModel, sizeof(__pyx_k_LevelModel), 0, 0, 1, 1},
28422  {&__pyx_n_s_LevelModel___init, __pyx_k_LevelModel___init, sizeof(__pyx_k_LevelModel___init), 0, 0, 1, 1},
28423  {&__pyx_n_s_LevelModel_calculateAuxiliaryQua, __pyx_k_LevelModel_calculateAuxiliaryQua, sizeof(__pyx_k_LevelModel_calculateAuxiliaryQua), 0, 0, 1, 1},
28424  {&__pyx_n_s_LevelModel_calculateCoefficients, __pyx_k_LevelModel_calculateCoefficients, sizeof(__pyx_k_LevelModel_calculateCoefficients), 0, 0, 1, 1},
28425  {&__pyx_n_s_LevelModel_calculateElementBound, __pyx_k_LevelModel_calculateElementBound, sizeof(__pyx_k_LevelModel_calculateElementBound), 0, 0, 1, 1},
28426  {&__pyx_n_s_LevelModel_calculateElementQuadr, __pyx_k_LevelModel_calculateElementQuadr, sizeof(__pyx_k_LevelModel_calculateElementQuadr), 0, 0, 1, 1},
28427  {&__pyx_n_s_LevelModel_calculateExteriorElem, __pyx_k_LevelModel_calculateExteriorElem, sizeof(__pyx_k_LevelModel_calculateExteriorElem), 0, 0, 1, 1},
28428  {&__pyx_n_s_LevelModel_calculateSolutionAtQu, __pyx_k_LevelModel_calculateSolutionAtQu, sizeof(__pyx_k_LevelModel_calculateSolutionAtQu), 0, 0, 1, 1},
28429  {&__pyx_n_s_LevelModel_estimate_mt, __pyx_k_LevelModel_estimate_mt, sizeof(__pyx_k_LevelModel_estimate_mt), 0, 0, 1, 1},
28430  {&__pyx_n_s_LevelModel_getJacobian, __pyx_k_LevelModel_getJacobian, sizeof(__pyx_k_LevelModel_getJacobian), 0, 0, 1, 1},
28431  {&__pyx_n_s_LevelModel_getResidual, __pyx_k_LevelModel_getResidual, sizeof(__pyx_k_LevelModel_getResidual), 0, 0, 1, 1},
28432  {&__pyx_n_s_MOVING_DOMAIN, __pyx_k_MOVING_DOMAIN, sizeof(__pyx_k_MOVING_DOMAIN), 0, 0, 1, 1},
28433  {&__pyx_kp_s_Mass_Conservation_Error, __pyx_k_Mass_Conservation_Error, sizeof(__pyx_k_Mass_Conservation_Error), 0, 0, 1, 0},
28434  {&__pyx_kp_u_Non_native_byte_order_not_suppor, __pyx_k_Non_native_byte_order_not_suppor, sizeof(__pyx_k_Non_native_byte_order_not_suppor), 0, 1, 0, 0},
28435  {&__pyx_n_s_NonlinearEquation, __pyx_k_NonlinearEquation, sizeof(__pyx_k_NonlinearEquation), 0, 0, 1, 1},
28436  {&__pyx_n_s_NumericalFlux, __pyx_k_NumericalFlux, sizeof(__pyx_k_NumericalFlux), 0, 0, 1, 1},
28437  {&__pyx_n_s_NumericalFlux_IIPG, __pyx_k_NumericalFlux_IIPG, sizeof(__pyx_k_NumericalFlux_IIPG), 0, 0, 1, 1},
28438  {&__pyx_n_s_NumericalFlux_IIPG___init, __pyx_k_NumericalFlux_IIPG___init, sizeof(__pyx_k_NumericalFlux_IIPG___init), 0, 0, 1, 1},
28439  {&__pyx_n_s_NumericalFlux_NIPG, __pyx_k_NumericalFlux_NIPG, sizeof(__pyx_k_NumericalFlux_NIPG), 0, 0, 1, 1},
28440  {&__pyx_n_s_NumericalFlux_NIPG___init, __pyx_k_NumericalFlux_NIPG___init, sizeof(__pyx_k_NumericalFlux_NIPG___init), 0, 0, 1, 1},
28441  {&__pyx_n_s_NumericalFlux_SIPG, __pyx_k_NumericalFlux_SIPG, sizeof(__pyx_k_NumericalFlux_SIPG), 0, 0, 1, 1},
28442  {&__pyx_n_s_NumericalFlux_SIPG___init, __pyx_k_NumericalFlux_SIPG___init, sizeof(__pyx_k_NumericalFlux_SIPG___init), 0, 0, 1, 1},
28443  {&__pyx_n_s_OneLevelTransport, __pyx_k_OneLevelTransport, sizeof(__pyx_k_OneLevelTransport), 0, 0, 1, 1},
28444  {&__pyx_kp_s_Optimized_LevelModel_for_ADR_eq, __pyx_k_Optimized_LevelModel_for_ADR_eq, sizeof(__pyx_k_Optimized_LevelModel_for_ADR_eq), 0, 0, 1, 0},
28445  {&__pyx_n_s_PostProcessingTools, __pyx_k_PostProcessingTools, sizeof(__pyx_k_PostProcessingTools), 0, 0, 1, 1},
28446  {&__pyx_n_s_Quadrature, __pyx_k_Quadrature, sizeof(__pyx_k_Quadrature), 0, 0, 1, 1},
28447  {&__pyx_kp_s_Residual_based_shock_capturing, __pyx_k_Residual_based_shock_capturing, sizeof(__pyx_k_Residual_based_shock_capturing), 0, 0, 1, 0},
28448  {&__pyx_n_s_RuntimeError, __pyx_k_RuntimeError, sizeof(__pyx_k_RuntimeError), 0, 0, 1, 1},
28449  {&__pyx_n_s_SGE_base, __pyx_k_SGE_base, sizeof(__pyx_k_SGE_base), 0, 0, 1, 1},
28450  {&__pyx_n_s_ShockCapturing, __pyx_k_ShockCapturing, sizeof(__pyx_k_ShockCapturing), 0, 0, 1, 1},
28451  {&__pyx_n_s_ShockCapturing___init, __pyx_k_ShockCapturing___init, sizeof(__pyx_k_ShockCapturing___init), 0, 0, 1, 1},
28452  {&__pyx_n_s_ShockCapturing_base, __pyx_k_ShockCapturing_base, sizeof(__pyx_k_ShockCapturing_base), 0, 0, 1, 1},
28453  {&__pyx_n_s_ShockCapturing_initializeElement, __pyx_k_ShockCapturing_initializeElement, sizeof(__pyx_k_ShockCapturing_initializeElement), 0, 0, 1, 1},
28454  {&__pyx_n_s_ShockCapturing_updateShockCaptur, __pyx_k_ShockCapturing_updateShockCaptur, sizeof(__pyx_k_ShockCapturing_updateShockCaptur), 0, 0, 1, 1},
28455  {&__pyx_n_s_SimplexLobattoQuadrature, __pyx_k_SimplexLobattoQuadrature, sizeof(__pyx_k_SimplexLobattoQuadrature), 0, 0, 1, 1},
28456  {&__pyx_n_s_SubgridError, __pyx_k_SubgridError, sizeof(__pyx_k_SubgridError), 0, 0, 1, 1},
28457  {&__pyx_n_s_SubgridError___init, __pyx_k_SubgridError___init, sizeof(__pyx_k_SubgridError___init), 0, 0, 1, 1},
28458  {&__pyx_kp_s_SubgridError_approximation_for, __pyx_k_SubgridError_approximation_for, sizeof(__pyx_k_SubgridError_approximation_for), 0, 0, 1, 0},
28459  {&__pyx_n_s_SubgridError_calculateSubgridErr, __pyx_k_SubgridError_calculateSubgridErr, sizeof(__pyx_k_SubgridError_calculateSubgridErr), 0, 0, 1, 1},
28460  {&__pyx_n_s_SubgridError_initializeElementQu, __pyx_k_SubgridError_initializeElementQu, sizeof(__pyx_k_SubgridError_initializeElementQu), 0, 0, 1, 1},
28461  {&__pyx_n_s_SubgridError_updateSubgridErrorH, __pyx_k_SubgridError_updateSubgridErrorH, sizeof(__pyx_k_SubgridError_updateSubgridErrorH), 0, 0, 1, 1},
28462  {&__pyx_n_s_TC_base, __pyx_k_TC_base, sizeof(__pyx_k_TC_base), 0, 0, 1, 1},
28463  {&__pyx_n_s_TimeIntegration, __pyx_k_TimeIntegration, sizeof(__pyx_k_TimeIntegration), 0, 0, 1, 1},
28464  {&__pyx_n_s_TimeIntegrationClass, __pyx_k_TimeIntegrationClass, sizeof(__pyx_k_TimeIntegrationClass), 0, 0, 1, 1},
28465  {&__pyx_n_s_Transport, __pyx_k_Transport, sizeof(__pyx_k_Transport), 0, 0, 1, 1},
28466  {&__pyx_kp_s_Updating_local_to_global_mapping, __pyx_k_Updating_local_to_global_mapping, sizeof(__pyx_k_Updating_local_to_global_mapping), 0, 0, 1, 0},
28467  {&__pyx_kp_s_VOF_max_numDiff_e, __pyx_k_VOF_max_numDiff_e, sizeof(__pyx_k_VOF_max_numDiff_e), 0, 0, 1, 0},
28468  {&__pyx_n_s_ValueError, __pyx_k_ValueError, sizeof(__pyx_k_ValueError), 0, 0, 1, 1},
28469  {&__pyx_n_s_VelocityPostProcessingChooser, __pyx_k_VelocityPostProcessingChooser, sizeof(__pyx_k_VelocityPostProcessingChooser), 0, 0, 1, 1},
28470  {&__pyx_n_s_XdmfWriter, __pyx_k_XdmfWriter, sizeof(__pyx_k_XdmfWriter), 0, 0, 1, 1},
28471  {&__pyx_kp_s_You_must_use_a_numerical_flux_to, __pyx_k_You_must_use_a_numerical_flux_to, sizeof(__pyx_k_You_must_use_a_numerical_flux_to), 0, 0, 1, 0},
28472  {&__pyx_n_s_a, __pyx_k_a, sizeof(__pyx_k_a), 0, 0, 1, 1},
28473  {&__pyx_n_s_aOfX, __pyx_k_aOfX, sizeof(__pyx_k_aOfX), 0, 0, 1, 1},
28474  {&__pyx_n_s_adjoint_sigma, __pyx_k_adjoint_sigma, sizeof(__pyx_k_adjoint_sigma), 0, 0, 1, 1},
28475  {&__pyx_n_s_adr, __pyx_k_adr, sizeof(__pyx_k_adr), 0, 0, 1, 1},
28476  {&__pyx_n_s_advection, __pyx_k_advection, sizeof(__pyx_k_advection), 0, 0, 1, 1},
28477  {&__pyx_n_s_advectiveFluxBoundaryConditionsD, __pyx_k_advectiveFluxBoundaryConditionsD, sizeof(__pyx_k_advectiveFluxBoundaryConditionsD), 0, 0, 1, 1},
28478  {&__pyx_n_s_advectiveFluxBoundaryConditionsS, __pyx_k_advectiveFluxBoundaryConditionsS, sizeof(__pyx_k_advectiveFluxBoundaryConditionsS), 0, 0, 1, 1},
28479  {&__pyx_n_s_advectiveFlux_bc, __pyx_k_advectiveFlux_bc, sizeof(__pyx_k_advectiveFlux_bc), 0, 0, 1, 1},
28480  {&__pyx_n_s_advectiveFlux_bc_flag, __pyx_k_advectiveFlux_bc_flag, sizeof(__pyx_k_advectiveFlux_bc_flag), 0, 0, 1, 1},
28481  {&__pyx_n_s_append, __pyx_k_append, sizeof(__pyx_k_append), 0, 0, 1, 1},
28482  {&__pyx_n_s_arange, __pyx_k_arange, sizeof(__pyx_k_arange), 0, 0, 1, 1},
28483  {&__pyx_n_s_array, __pyx_k_array, sizeof(__pyx_k_array), 0, 0, 1, 1},
28484  {&__pyx_n_s_boundaryAdjoint_sigma, __pyx_k_boundaryAdjoint_sigma, sizeof(__pyx_k_boundaryAdjoint_sigma), 0, 0, 1, 1},
28485  {&__pyx_n_s_boundaryJac_ref, __pyx_k_boundaryJac_ref, sizeof(__pyx_k_boundaryJac_ref), 0, 0, 1, 1},
28486  {&__pyx_n_s_boundaryJacobians, __pyx_k_boundaryJacobians, sizeof(__pyx_k_boundaryJacobians), 0, 0, 1, 1},
28487  {&__pyx_n_s_boundaryNormals, __pyx_k_boundaryNormals, sizeof(__pyx_k_boundaryNormals), 0, 0, 1, 1},
28488  {&__pyx_n_s_buildUnion, __pyx_k_buildUnion, sizeof(__pyx_k_buildUnion), 0, 0, 1, 1},
28489  {&__pyx_n_s_c, __pyx_k_c, sizeof(__pyx_k_c), 0, 0, 1, 1},
28490  {&__pyx_n_s_calculateAuxiliaryQuantitiesAfte, __pyx_k_calculateAuxiliaryQuantitiesAfte, sizeof(__pyx_k_calculateAuxiliaryQuantitiesAfte), 0, 0, 1, 1},
28491  {&__pyx_n_s_calculateCoefficients, __pyx_k_calculateCoefficients, sizeof(__pyx_k_calculateCoefficients), 0, 0, 1, 1},
28492  {&__pyx_n_s_calculateElementBoundaryQuadratu, __pyx_k_calculateElementBoundaryQuadratu, sizeof(__pyx_k_calculateElementBoundaryQuadratu), 0, 0, 1, 1},
28493  {&__pyx_n_s_calculateElementQuadrature, __pyx_k_calculateElementQuadrature, sizeof(__pyx_k_calculateElementQuadrature), 0, 0, 1, 1},
28494  {&__pyx_n_s_calculateExteriorElementBoundary, __pyx_k_calculateExteriorElementBoundary, sizeof(__pyx_k_calculateExteriorElementBoundary), 0, 0, 1, 1},
28495  {&__pyx_n_s_calculateJacobian, __pyx_k_calculateJacobian, sizeof(__pyx_k_calculateJacobian), 0, 0, 1, 1},
28496  {&__pyx_n_s_calculateQuadrature, __pyx_k_calculateQuadrature, sizeof(__pyx_k_calculateQuadrature), 0, 0, 1, 1},
28497  {&__pyx_n_s_calculateResidual, __pyx_k_calculateResidual, sizeof(__pyx_k_calculateResidual), 0, 0, 1, 1},
28498  {&__pyx_n_s_calculateSolutionAtQuadrature, __pyx_k_calculateSolutionAtQuadrature, sizeof(__pyx_k_calculateSolutionAtQuadrature), 0, 0, 1, 1},
28499  {&__pyx_n_s_calculateSubgridError, __pyx_k_calculateSubgridError, sizeof(__pyx_k_calculateSubgridError), 0, 0, 1, 1},
28500  {&__pyx_n_s_cebq, __pyx_k_cebq, sizeof(__pyx_k_cebq), 0, 0, 1, 1},
28501  {&__pyx_n_s_cebq_global, __pyx_k_cebq_global, sizeof(__pyx_k_cebq_global), 0, 0, 1, 1},
28502  {&__pyx_n_s_cebqe, __pyx_k_cebqe, sizeof(__pyx_k_cebqe), 0, 0, 1, 1},
28503  {&__pyx_n_s_cfemIntegrals, __pyx_k_cfemIntegrals, sizeof(__pyx_k_cfemIntegrals), 0, 0, 1, 1},
28504  {&__pyx_n_s_cfl, __pyx_k_cfl, sizeof(__pyx_k_cfl), 0, 0, 1, 1},
28505  {&__pyx_n_s_ci, __pyx_k_ci, sizeof(__pyx_k_ci), 0, 0, 1, 1},
28506  {&__pyx_n_s_cj, __pyx_k_cj, sizeof(__pyx_k_cj), 0, 0, 1, 1},
28507  {&__pyx_n_s_ck, __pyx_k_ck, sizeof(__pyx_k_ck), 0, 0, 1, 1},
28508  {&__pyx_n_s_class, __pyx_k_class, sizeof(__pyx_k_class), 0, 0, 1, 1},
28509  {&__pyx_n_s_coefficients, __pyx_k_coefficients, sizeof(__pyx_k_coefficients), 0, 0, 1, 1},
28510  {&__pyx_n_s_comm, __pyx_k_comm, sizeof(__pyx_k_comm), 0, 0, 1, 1},
28511  {&__pyx_n_s_compKernelFlag, __pyx_k_compKernelFlag, sizeof(__pyx_k_compKernelFlag), 0, 0, 1, 1},
28512  {&__pyx_n_s_components, __pyx_k_components, sizeof(__pyx_k_components), 0, 0, 1, 1},
28513  {&__pyx_n_s_conservativeFlux, __pyx_k_conservativeFlux, sizeof(__pyx_k_conservativeFlux), 0, 0, 1, 1},
28514  {&__pyx_n_s_conservativeFluxDict, __pyx_k_conservativeFluxDict, sizeof(__pyx_k_conservativeFluxDict), 0, 0, 1, 1},
28515  {&__pyx_n_s_constant, __pyx_k_constant, sizeof(__pyx_k_constant), 0, 0, 1, 1},
28516  {&__pyx_n_s_copy, __pyx_k_copy, sizeof(__pyx_k_copy), 0, 0, 1, 1},
28517  {&__pyx_n_s_cq, __pyx_k_cq, sizeof(__pyx_k_cq), 0, 0, 1, 1},
28518  {&__pyx_n_s_csrColumnOffsets, __pyx_k_csrColumnOffsets, sizeof(__pyx_k_csrColumnOffsets), 0, 0, 1, 1},
28519  {&__pyx_n_s_csrColumnOffsets_eb, __pyx_k_csrColumnOffsets_eb, sizeof(__pyx_k_csrColumnOffsets_eb), 0, 0, 1, 1},
28520  {&__pyx_n_s_csrColumnOffsets_eb_u_u, __pyx_k_csrColumnOffsets_eb_u_u, sizeof(__pyx_k_csrColumnOffsets_eb_u_u), 0, 0, 1, 1},
28521  {&__pyx_n_s_csrColumnOffsets_u_u, __pyx_k_csrColumnOffsets_u_u, sizeof(__pyx_k_csrColumnOffsets_u_u), 0, 0, 1, 1},
28522  {&__pyx_n_s_csrRowIndeces, __pyx_k_csrRowIndeces, sizeof(__pyx_k_csrRowIndeces), 0, 0, 1, 1},
28523  {&__pyx_n_s_csrRowIndeces_u_u, __pyx_k_csrRowIndeces_u_u, sizeof(__pyx_k_csrRowIndeces_u_u), 0, 0, 1, 1},
28524  {&__pyx_n_s_d, __pyx_k_d, sizeof(__pyx_k_d), 0, 0, 1, 1},
28525  {&__pyx_n_s_dS_ref, __pyx_k_dS_ref, sizeof(__pyx_k_dS_ref), 0, 0, 1, 1},
28526  {&__pyx_n_s_dV_ref, __pyx_k_dV_ref, sizeof(__pyx_k_dV_ref), 0, 0, 1, 1},
28527  {&__pyx_n_s_data, __pyx_k_data, sizeof(__pyx_k_data), 0, 0, 1, 1},
28528  {&__pyx_n_s_dc, __pyx_k_dc, sizeof(__pyx_k_dc), 0, 0, 1, 1},
28529  {&__pyx_n_s_default, __pyx_k_default, sizeof(__pyx_k_default), 0, 0, 1, 1},
28530  {&__pyx_n_s_defaultName, __pyx_k_defaultName, sizeof(__pyx_k_defaultName), 0, 0, 1, 1},
28531  {&__pyx_n_s_df, __pyx_k_df, sizeof(__pyx_k_df), 0, 0, 1, 1},
28532  {&__pyx_n_s_diffusion, __pyx_k_diffusion, sizeof(__pyx_k_diffusion), 0, 0, 1, 1},
28533  {&__pyx_n_s_diffusionDict, __pyx_k_diffusionDict, sizeof(__pyx_k_diffusionDict), 0, 0, 1, 1},
28534  {&__pyx_n_s_diffusiveFluxBoundaryConditionsD, __pyx_k_diffusiveFluxBoundaryConditionsD, sizeof(__pyx_k_diffusiveFluxBoundaryConditionsD), 0, 0, 1, 1},
28535  {&__pyx_n_s_diffusiveFluxBoundaryConditionsD_2, __pyx_k_diffusiveFluxBoundaryConditionsD_2, sizeof(__pyx_k_diffusiveFluxBoundaryConditionsD_2), 0, 0, 1, 1},
28536  {&__pyx_n_s_diffusiveFluxBoundaryConditionsS, __pyx_k_diffusiveFluxBoundaryConditionsS, sizeof(__pyx_k_diffusiveFluxBoundaryConditionsS), 0, 0, 1, 1},
28537  {&__pyx_n_s_diffusiveFlux_bc, __pyx_k_diffusiveFlux_bc, sizeof(__pyx_k_diffusiveFlux_bc), 0, 0, 1, 1},
28538  {&__pyx_n_s_diffusiveFlux_bc_flag, __pyx_k_diffusiveFlux_bc_flag, sizeof(__pyx_k_diffusiveFlux_bc_flag), 0, 0, 1, 1},
28539  {&__pyx_n_s_dim, __pyx_k_dim, sizeof(__pyx_k_dim), 0, 0, 1, 1},
28540  {&__pyx_n_s_dirichletConditions, __pyx_k_dirichletConditions, sizeof(__pyx_k_dirichletConditions), 0, 0, 1, 1},
28541  {&__pyx_n_s_dirichletConditionsForceDOF, __pyx_k_dirichletConditionsForceDOF, sizeof(__pyx_k_dirichletConditionsForceDOF), 0, 0, 1, 1},
28542  {&__pyx_n_s_dirichletNodeSetList, __pyx_k_dirichletNodeSetList, sizeof(__pyx_k_dirichletNodeSetList), 0, 0, 1, 1},
28543  {&__pyx_n_s_doc, __pyx_k_doc, sizeof(__pyx_k_doc), 0, 0, 1, 1},
28544  {&__pyx_n_s_dof, __pyx_k_dof, sizeof(__pyx_k_dof), 0, 0, 1, 1},
28545  {&__pyx_n_s_dofBoundaryConditionsDict, __pyx_k_dofBoundaryConditionsDict, sizeof(__pyx_k_dofBoundaryConditionsDict), 0, 0, 1, 1},
28546  {&__pyx_n_s_dofBoundaryConditionsSetterDict, __pyx_k_dofBoundaryConditionsSetterDict, sizeof(__pyx_k_dofBoundaryConditionsSetterDict), 0, 0, 1, 1},
28547  {&__pyx_n_s_dofMap, __pyx_k_dofMap, sizeof(__pyx_k_dofMap), 0, 0, 1, 1},
28548  {&__pyx_n_s_dphi, __pyx_k_dphi, sizeof(__pyx_k_dphi), 0, 0, 1, 1},
28549  {&__pyx_n_s_dtype, __pyx_k_dtype, sizeof(__pyx_k_dtype), 0, 0, 1, 1},
28550  {&__pyx_n_s_eN_global, __pyx_k_eN_global, sizeof(__pyx_k_eN_global), 0, 0, 1, 1},
28551  {&__pyx_n_s_ebN, __pyx_k_ebN, sizeof(__pyx_k_ebN), 0, 0, 1, 1},
28552  {&__pyx_n_s_ebNE, __pyx_k_ebNE, sizeof(__pyx_k_ebNE), 0, 0, 1, 1},
28553  {&__pyx_n_s_ebN_element, __pyx_k_ebN_element, sizeof(__pyx_k_ebN_element), 0, 0, 1, 1},
28554  {&__pyx_n_s_ebq, __pyx_k_ebq, sizeof(__pyx_k_ebq), 0, 0, 1, 1},
28555  {&__pyx_n_s_ebq_global, __pyx_k_ebq_global, sizeof(__pyx_k_ebq_global), 0, 0, 1, 1},
28556  {&__pyx_n_s_ebqe, __pyx_k_ebqe, sizeof(__pyx_k_ebqe), 0, 0, 1, 1},
28557  {&__pyx_n_s_ebqe_a, __pyx_k_ebqe_a, sizeof(__pyx_k_ebqe_a), 0, 0, 1, 1},
28558  {&__pyx_n_s_ebqe_bc_advectiveFlux_u_ext, __pyx_k_ebqe_bc_advectiveFlux_u_ext, sizeof(__pyx_k_ebqe_bc_advectiveFlux_u_ext), 0, 0, 1, 1},
28559  {&__pyx_n_s_ebqe_bc_flux_u_ext, __pyx_k_ebqe_bc_flux_u_ext, sizeof(__pyx_k_ebqe_bc_flux_u_ext), 0, 0, 1, 1},
28560  {&__pyx_n_s_ebqe_bc_u_ext, __pyx_k_ebqe_bc_u_ext, sizeof(__pyx_k_ebqe_bc_u_ext), 0, 0, 1, 1},
28561  {&__pyx_n_s_ebqe_penalty, __pyx_k_ebqe_penalty, sizeof(__pyx_k_ebqe_penalty), 0, 0, 1, 1},
28562  {&__pyx_n_s_ebqe_v, __pyx_k_ebqe_v, sizeof(__pyx_k_ebqe_v), 0, 0, 1, 1},
28563  {&__pyx_n_s_elemQuadIsDict, __pyx_k_elemQuadIsDict, sizeof(__pyx_k_elemQuadIsDict), 0, 0, 1, 1},
28564  {&__pyx_n_s_elementBoundaryDiametersArray, __pyx_k_elementBoundaryDiametersArray, sizeof(__pyx_k_elementBoundaryDiametersArray), 0, 0, 1, 1},
28565  {&__pyx_n_s_elementBoundaryElementsArray, __pyx_k_elementBoundaryElementsArray, sizeof(__pyx_k_elementBoundaryElementsArray), 0, 0, 1, 1},
28566  {&__pyx_n_s_elementBoundaryIntegralKeys, __pyx_k_elementBoundaryIntegralKeys, sizeof(__pyx_k_elementBoundaryIntegralKeys), 0, 0, 1, 1},
28567  {&__pyx_n_s_elementBoundaryIntegrals, __pyx_k_elementBoundaryIntegrals, sizeof(__pyx_k_elementBoundaryIntegrals), 0, 0, 1, 1},
28568  {&__pyx_n_s_elementBoundaryLocalElementBound, __pyx_k_elementBoundaryLocalElementBound, sizeof(__pyx_k_elementBoundaryLocalElementBound), 0, 0, 1, 1},
28569  {&__pyx_n_s_elementBoundaryQuadrature, __pyx_k_elementBoundaryQuadrature, sizeof(__pyx_k_elementBoundaryQuadrature), 0, 0, 1, 1},
28570  {&__pyx_n_s_elementBoundaryQuadratureDict, __pyx_k_elementBoundaryQuadratureDict, sizeof(__pyx_k_elementBoundaryQuadratureDict), 0, 0, 1, 1},
28571  {&__pyx_n_s_elementBoundaryQuadratureDiction, __pyx_k_elementBoundaryQuadratureDiction, sizeof(__pyx_k_elementBoundaryQuadratureDiction), 0, 0, 1, 1},
28572  {&__pyx_n_s_elementBoundaryQuadraturePoints, __pyx_k_elementBoundaryQuadraturePoints, sizeof(__pyx_k_elementBoundaryQuadraturePoints), 0, 0, 1, 1},
28573  {&__pyx_n_s_elementBoundaryQuadratureRuleInd, __pyx_k_elementBoundaryQuadratureRuleInd, sizeof(__pyx_k_elementBoundaryQuadratureRuleInd), 0, 0, 1, 1},
28574  {&__pyx_n_s_elementBoundaryQuadratureWeights, __pyx_k_elementBoundaryQuadratureWeights, sizeof(__pyx_k_elementBoundaryQuadratureWeights), 0, 0, 1, 1},
28575  {&__pyx_n_s_elementDiameter, __pyx_k_elementDiameter, sizeof(__pyx_k_elementDiameter), 0, 0, 1, 1},
28576  {&__pyx_n_s_elementDiametersArray, __pyx_k_elementDiametersArray, sizeof(__pyx_k_elementDiametersArray), 0, 0, 1, 1},
28577  {&__pyx_n_s_elementEffectiveDiametersArray, __pyx_k_elementEffectiveDiametersArray, sizeof(__pyx_k_elementEffectiveDiametersArray), 0, 0, 1, 1},
28578  {&__pyx_n_s_elementInnerDiametersArray, __pyx_k_elementInnerDiametersArray, sizeof(__pyx_k_elementInnerDiametersArray), 0, 0, 1, 1},
28579  {&__pyx_n_s_elementIntegralKeys, __pyx_k_elementIntegralKeys, sizeof(__pyx_k_elementIntegralKeys), 0, 0, 1, 1},
28580  {&__pyx_n_s_elementMaps, __pyx_k_elementMaps, sizeof(__pyx_k_elementMaps), 0, 0, 1, 1},
28581  {&__pyx_n_s_elementNodesArray, __pyx_k_elementNodesArray, sizeof(__pyx_k_elementNodesArray), 0, 0, 1, 1},
28582  {&__pyx_n_s_elementQuadrature, __pyx_k_elementQuadrature, sizeof(__pyx_k_elementQuadrature), 0, 0, 1, 1},
28583  {&__pyx_n_s_elementQuadratureDict, __pyx_k_elementQuadratureDict, sizeof(__pyx_k_elementQuadratureDict), 0, 0, 1, 1},
28584  {&__pyx_n_s_elementQuadratureDictionaryWrite, __pyx_k_elementQuadratureDictionaryWrite, sizeof(__pyx_k_elementQuadratureDictionaryWrite), 0, 0, 1, 1},
28585  {&__pyx_n_s_elementQuadraturePoints, __pyx_k_elementQuadraturePoints, sizeof(__pyx_k_elementQuadraturePoints), 0, 0, 1, 1},
28586  {&__pyx_n_s_elementQuadratureRuleIndeces, __pyx_k_elementQuadratureRuleIndeces, sizeof(__pyx_k_elementQuadratureRuleIndeces), 0, 0, 1, 1},
28587  {&__pyx_n_s_elementQuadratureWeights, __pyx_k_elementQuadratureWeights, sizeof(__pyx_k_elementQuadratureWeights), 0, 0, 1, 1},
28588  {&__pyx_kp_s_element_and_element_boundary_Jac, __pyx_k_element_and_element_boundary_Jac, sizeof(__pyx_k_element_and_element_boundary_Jac), 0, 0, 1, 0},
28589  {&__pyx_n_s_enumerate, __pyx_k_enumerate, sizeof(__pyx_k_enumerate), 0, 0, 1, 1},
28590  {&__pyx_n_s_estimate_mt, __pyx_k_estimate_mt, sizeof(__pyx_k_estimate_mt), 0, 0, 1, 1},
28591  {&__pyx_n_s_evaluate, __pyx_k_evaluate, sizeof(__pyx_k_evaluate), 0, 0, 1, 1},
28592  {&__pyx_n_s_exteriorElementBoundariesArray, __pyx_k_exteriorElementBoundariesArray, sizeof(__pyx_k_exteriorElementBoundariesArray), 0, 0, 1, 1},
28593  {&__pyx_n_s_exteriorElementBoundaryQuadratur, __pyx_k_exteriorElementBoundaryQuadratur, sizeof(__pyx_k_exteriorElementBoundaryQuadratur), 0, 0, 1, 1},
28594  {&__pyx_n_s_fOfX, __pyx_k_fOfX, sizeof(__pyx_k_fOfX), 0, 0, 1, 1},
28595  {&__pyx_n_s_fabs, __pyx_k_fabs, sizeof(__pyx_k_fabs), 0, 0, 1, 1},
28596  {&__pyx_n_s_fbcObject, __pyx_k_fbcObject, sizeof(__pyx_k_fbcObject), 0, 0, 1, 1},
28597  {&__pyx_n_s_femSpace, __pyx_k_femSpace, sizeof(__pyx_k_femSpace), 0, 0, 1, 1},
28598  {&__pyx_n_s_fill, __pyx_k_fill, sizeof(__pyx_k_fill), 0, 0, 1, 1},
28599  {&__pyx_n_s_flag, __pyx_k_flag, sizeof(__pyx_k_flag), 0, 0, 1, 1},
28600  {&__pyx_n_s_flat, __pyx_k_flat, sizeof(__pyx_k_flat), 0, 0, 1, 1},
28601  {&__pyx_n_s_fluxBoundaryConditions, __pyx_k_fluxBoundaryConditions, sizeof(__pyx_k_fluxBoundaryConditions), 0, 0, 1, 1},
28602  {&__pyx_n_s_fluxBoundaryConditionsDict, __pyx_k_fluxBoundaryConditionsDict, sizeof(__pyx_k_fluxBoundaryConditionsDict), 0, 0, 1, 1},
28603  {&__pyx_n_s_fluxBoundaryConditionsObjectsDic, __pyx_k_fluxBoundaryConditionsObjectsDic, sizeof(__pyx_k_fluxBoundaryConditionsObjectsDic), 0, 0, 1, 1},
28604  {&__pyx_n_s_forceStrongConditions, __pyx_k_forceStrongConditions, sizeof(__pyx_k_forceStrongConditions), 0, 0, 1, 1},
28605  {&__pyx_n_s_forceStrongDirichlet, __pyx_k_forceStrongDirichlet, sizeof(__pyx_k_forceStrongDirichlet), 0, 0, 1, 1},
28606  {&__pyx_n_s_g, __pyx_k_g, sizeof(__pyx_k_g), 0, 0, 1, 1},
28607  {&__pyx_n_s_get, __pyx_k_get, sizeof(__pyx_k_get), 0, 0, 1, 1},
28608  {&__pyx_n_s_getAdvectiveFluxBoundaryConditio, __pyx_k_getAdvectiveFluxBoundaryConditio, sizeof(__pyx_k_getAdvectiveFluxBoundaryConditio), 0, 0, 1, 1},
28609  {&__pyx_n_s_getBasisGradientValuesRef, __pyx_k_getBasisGradientValuesRef, sizeof(__pyx_k_getBasisGradientValuesRef), 0, 0, 1, 1},
28610  {&__pyx_n_s_getBasisGradientValuesTraceRef, __pyx_k_getBasisGradientValuesTraceRef, sizeof(__pyx_k_getBasisGradientValuesTraceRef), 0, 0, 1, 1},
28611  {&__pyx_n_s_getBasisValuesRef, __pyx_k_getBasisValuesRef, sizeof(__pyx_k_getBasisValuesRef), 0, 0, 1, 1},
28612  {&__pyx_n_s_getBasisValuesTraceRef, __pyx_k_getBasisValuesTraceRef, sizeof(__pyx_k_getBasisValuesTraceRef), 0, 0, 1, 1},
28613  {&__pyx_n_s_getCSRrepresentation, __pyx_k_getCSRrepresentation, sizeof(__pyx_k_getCSRrepresentation), 0, 0, 1, 1},
28614  {&__pyx_n_s_getDiffusiveFluxBoundaryConditio, __pyx_k_getDiffusiveFluxBoundaryConditio, sizeof(__pyx_k_getDiffusiveFluxBoundaryConditio), 0, 0, 1, 1},
28615  {&__pyx_n_s_getJacobian, __pyx_k_getJacobian, sizeof(__pyx_k_getJacobian), 0, 0, 1, 1},
28616  {&__pyx_n_s_getPointwiseBoundaryConditions, __pyx_k_getPointwiseBoundaryConditions, sizeof(__pyx_k_getPointwiseBoundaryConditions), 0, 0, 1, 1},
28617  {&__pyx_n_s_getResidual, __pyx_k_getResidual, sizeof(__pyx_k_getResidual), 0, 0, 1, 1},
28618  {&__pyx_n_s_getValues, __pyx_k_getValues, sizeof(__pyx_k_getValues), 0, 0, 1, 1},
28619  {&__pyx_n_s_getValuesGlobalExteriorTrace, __pyx_k_getValuesGlobalExteriorTrace, sizeof(__pyx_k_getValuesGlobalExteriorTrace), 0, 0, 1, 1},
28620  {&__pyx_n_s_globalJacobian, __pyx_k_globalJacobian, sizeof(__pyx_k_globalJacobian), 0, 0, 1, 1},
28621  {&__pyx_n_s_globalMax, __pyx_k_globalMax, sizeof(__pyx_k_globalMax), 0, 0, 1, 1},
28622  {&__pyx_n_s_globalResidual, __pyx_k_globalResidual, sizeof(__pyx_k_globalResidual), 0, 0, 1, 1},
28623  {&__pyx_n_s_globalSum, __pyx_k_globalSum, sizeof(__pyx_k_globalSum), 0, 0, 1, 1},
28624  {&__pyx_n_s_grad_psi, __pyx_k_grad_psi, sizeof(__pyx_k_grad_psi), 0, 0, 1, 1},
28625  {&__pyx_n_s_grad_psi_trace, __pyx_k_grad_psi_trace, sizeof(__pyx_k_grad_psi_trace), 0, 0, 1, 1},
28626  {&__pyx_kp_s_grad_u, __pyx_k_grad_u, sizeof(__pyx_k_grad_u), 0, 0, 1, 0},
28627  {&__pyx_n_s_hamiltonian, __pyx_k_hamiltonian, sizeof(__pyx_k_hamiltonian), 0, 0, 1, 1},
28628  {&__pyx_n_s_has_key, __pyx_k_has_key, sizeof(__pyx_k_has_key), 0, 0, 1, 1},
28629  {&__pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_k_home_cekees_proteus_proteus_ADR, sizeof(__pyx_k_home_cekees_proteus_proteus_ADR), 0, 0, 1, 0},
28630  {&__pyx_n_s_i, __pyx_k_i, sizeof(__pyx_k_i), 0, 0, 1, 1},
28631  {&__pyx_n_s_import, __pyx_k_import, sizeof(__pyx_k_import), 0, 0, 1, 1},
28632  {&__pyx_kp_s_inflowBC_internalNodes_updateLoc, __pyx_k_inflowBC_internalNodes_updateLoc, sizeof(__pyx_k_inflowBC_internalNodes_updateLoc), 0, 0, 1, 0},
28633  {&__pyx_n_s_inflowBoundaryBC, __pyx_k_inflowBoundaryBC, sizeof(__pyx_k_inflowBoundaryBC), 0, 0, 1, 1},
28634  {&__pyx_n_s_inflowBoundaryBC_values, __pyx_k_inflowBoundaryBC_values, sizeof(__pyx_k_inflowBoundaryBC_values), 0, 0, 1, 1},
28635  {&__pyx_n_s_inflowFlux, __pyx_k_inflowFlux, sizeof(__pyx_k_inflowFlux), 0, 0, 1, 1},
28636  {&__pyx_n_s_init, __pyx_k_init, sizeof(__pyx_k_init), 0, 0, 1, 1},
28637  {&__pyx_n_s_initializationPhase, __pyx_k_initializationPhase, sizeof(__pyx_k_initializationPhase), 0, 0, 1, 1},
28638  {&__pyx_n_s_initializeElementBoundaryQuadrat, __pyx_k_initializeElementBoundaryQuadrat, sizeof(__pyx_k_initializeElementBoundaryQuadrat), 0, 0, 1, 1},
28639  {&__pyx_n_s_initializeElementQuadrature, __pyx_k_initializeElementQuadrature, sizeof(__pyx_k_initializeElementQuadrature), 0, 0, 1, 1},
28640  {&__pyx_n_s_initializeGlobalExteriorElementB, __pyx_k_initializeGlobalExteriorElementB, sizeof(__pyx_k_initializeGlobalExteriorElementB), 0, 0, 1, 1},
28641  {&__pyx_n_s_initializeMesh, __pyx_k_initializeMesh, sizeof(__pyx_k_initializeMesh), 0, 0, 1, 1},
28642  {&__pyx_n_s_initializeTimeIntegration, __pyx_k_initializeTimeIntegration, sizeof(__pyx_k_initializeTimeIntegration), 0, 0, 1, 1},
28643  {&__pyx_n_s_integrateInterpolationPoints, __pyx_k_integrateInterpolationPoints, sizeof(__pyx_k_integrateInterpolationPoints), 0, 0, 1, 1},
28644  {&__pyx_n_s_internalNodes, __pyx_k_internalNodes, sizeof(__pyx_k_internalNodes), 0, 0, 1, 1},
28645  {&__pyx_n_s_internalNodesArray, __pyx_k_internalNodesArray, sizeof(__pyx_k_internalNodesArray), 0, 0, 1, 1},
28646  {&__pyx_n_s_interpolationConditions, __pyx_k_interpolationConditions, sizeof(__pyx_k_interpolationConditions), 0, 0, 1, 1},
28647  {&__pyx_n_s_isAdvectiveFluxBoundary_u, __pyx_k_isAdvectiveFluxBoundary_u, sizeof(__pyx_k_isAdvectiveFluxBoundary_u), 0, 0, 1, 1},
28648  {&__pyx_n_s_isDOFBoundary, __pyx_k_isDOFBoundary, sizeof(__pyx_k_isDOFBoundary), 0, 0, 1, 1},
28649  {&__pyx_n_s_isDOFBoundary_u, __pyx_k_isDOFBoundary_u, sizeof(__pyx_k_isDOFBoundary_u), 0, 0, 1, 1},
28650  {&__pyx_n_s_isFluxBoundary_u, __pyx_k_isFluxBoundary_u, sizeof(__pyx_k_isFluxBoundary_u), 0, 0, 1, 1},
28651  {&__pyx_n_s_iteritems, __pyx_k_iteritems, sizeof(__pyx_k_iteritems), 0, 0, 1, 1},
28652  {&__pyx_n_s_jacobian, __pyx_k_jacobian, sizeof(__pyx_k_jacobian), 0, 0, 1, 1},
28653  {&__pyx_n_s_k, __pyx_k_k, sizeof(__pyx_k_k), 0, 0, 1, 1},
28654  {&__pyx_n_s_keys, __pyx_k_keys, sizeof(__pyx_k_keys), 0, 0, 1, 1},
28655  {&__pyx_n_s_l2g, __pyx_k_l2g, sizeof(__pyx_k_l2g), 0, 0, 1, 1},
28656  {&__pyx_n_s_l2proj, __pyx_k_l2proj, sizeof(__pyx_k_l2proj), 0, 0, 1, 1},
28657  {&__pyx_n_s_lag, __pyx_k_lag, sizeof(__pyx_k_lag), 0, 0, 1, 1},
28658  {&__pyx_n_s_lag_shockCapturing, __pyx_k_lag_shockCapturing, sizeof(__pyx_k_lag_shockCapturing), 0, 0, 1, 1},
28659  {&__pyx_n_s_level, __pyx_k_level, sizeof(__pyx_k_level), 0, 0, 1, 1},
28660  {&__pyx_n_s_linear, __pyx_k_linear, sizeof(__pyx_k_linear), 0, 0, 1, 1},
28661  {&__pyx_n_s_localFunctionSpace, __pyx_k_localFunctionSpace, sizeof(__pyx_k_localFunctionSpace), 0, 0, 1, 1},
28662  {&__pyx_n_s_log, __pyx_k_log, sizeof(__pyx_k_log), 0, 0, 1, 1},
28663  {&__pyx_n_s_logEvent, __pyx_k_logEvent, sizeof(__pyx_k_logEvent), 0, 0, 1, 1},
28664  {&__pyx_n_s_lowmem, __pyx_k_lowmem, sizeof(__pyx_k_lowmem), 0, 0, 1, 1},
28665  {&__pyx_n_s_m, __pyx_k_m, sizeof(__pyx_k_m), 0, 0, 1, 1},
28666  {&__pyx_n_s_main, __pyx_k_main, sizeof(__pyx_k_main), 0, 0, 1, 1},
28667  {&__pyx_n_s_mass, __pyx_k_mass, sizeof(__pyx_k_mass), 0, 0, 1, 1},
28668  {&__pyx_n_s_massConservationError, __pyx_k_massConservationError, sizeof(__pyx_k_massConservationError), 0, 0, 1, 1},
28669  {&__pyx_n_s_massLumping, __pyx_k_massLumping, sizeof(__pyx_k_massLumping), 0, 0, 1, 1},
28670  {&__pyx_n_s_matType, __pyx_k_matType, sizeof(__pyx_k_matType), 0, 0, 1, 1},
28671  {&__pyx_n_s_math, __pyx_k_math, sizeof(__pyx_k_math), 0, 0, 1, 1},
28672  {&__pyx_n_s_max, __pyx_k_max, sizeof(__pyx_k_max), 0, 0, 1, 1},
28673  {&__pyx_n_s_max_nDOF_element, __pyx_k_max_nDOF_element, sizeof(__pyx_k_max_nDOF_element), 0, 0, 1, 1},
28674  {&__pyx_n_s_memory, __pyx_k_memory, sizeof(__pyx_k_memory), 0, 0, 1, 1},
28675  {&__pyx_n_s_mesh, __pyx_k_mesh, sizeof(__pyx_k_mesh), 0, 0, 1, 1},
28676  {&__pyx_n_s_mesh_dof, __pyx_k_mesh_dof, sizeof(__pyx_k_mesh_dof), 0, 0, 1, 1},
28677  {&__pyx_n_s_mesh_grad_trial_ref, __pyx_k_mesh_grad_trial_ref, sizeof(__pyx_k_mesh_grad_trial_ref), 0, 0, 1, 1},
28678  {&__pyx_n_s_mesh_grad_trial_trace_ref, __pyx_k_mesh_grad_trial_trace_ref, sizeof(__pyx_k_mesh_grad_trial_trace_ref), 0, 0, 1, 1},
28679  {&__pyx_n_s_mesh_l2g, __pyx_k_mesh_l2g, sizeof(__pyx_k_mesh_l2g), 0, 0, 1, 1},
28680  {&__pyx_n_s_mesh_trial_ref, __pyx_k_mesh_trial_ref, sizeof(__pyx_k_mesh_trial_ref), 0, 0, 1, 1},
28681  {&__pyx_n_s_mesh_trial_trace_ref, __pyx_k_mesh_trial_trace_ref, sizeof(__pyx_k_mesh_trial_trace_ref), 0, 0, 1, 1},
28682  {&__pyx_n_s_metaclass, __pyx_k_metaclass, sizeof(__pyx_k_metaclass), 0, 0, 1, 1},
28683  {&__pyx_n_s_mixedFlow, __pyx_k_mixedFlow, sizeof(__pyx_k_mixedFlow), 0, 0, 1, 1},
28684  {&__pyx_n_s_module, __pyx_k_module, sizeof(__pyx_k_module), 0, 0, 1, 1},
28685  {&__pyx_n_s_movingDomain, __pyx_k_movingDomain, sizeof(__pyx_k_movingDomain), 0, 0, 1, 1},
28686  {&__pyx_n_s_n, __pyx_k_n, sizeof(__pyx_k_n), 0, 0, 1, 1},
28687  {&__pyx_n_s_nCalls, __pyx_k_nCalls, sizeof(__pyx_k_nCalls), 0, 0, 1, 1},
28688  {&__pyx_n_s_nDOF_mesh_trial_elementIn, __pyx_k_nDOF_mesh_trial_elementIn, sizeof(__pyx_k_nDOF_mesh_trial_elementIn), 0, 0, 1, 1},
28689  {&__pyx_n_s_nDOF_phi_trial_element, __pyx_k_nDOF_phi_trial_element, sizeof(__pyx_k_nDOF_phi_trial_element), 0, 0, 1, 1},
28690  {&__pyx_n_s_nDOF_test_element, __pyx_k_nDOF_test_element, sizeof(__pyx_k_nDOF_test_element), 0, 0, 1, 1},
28691  {&__pyx_n_s_nDOF_test_elementIn, __pyx_k_nDOF_test_elementIn, sizeof(__pyx_k_nDOF_test_elementIn), 0, 0, 1, 1},
28692  {&__pyx_n_s_nDOF_trial_element, __pyx_k_nDOF_trial_element, sizeof(__pyx_k_nDOF_trial_element), 0, 0, 1, 1},
28693  {&__pyx_n_s_nDOF_trial_elementIn, __pyx_k_nDOF_trial_elementIn, sizeof(__pyx_k_nDOF_trial_elementIn), 0, 0, 1, 1},
28694  {&__pyx_n_s_nElementBoundaries_element, __pyx_k_nElementBoundaries_element, sizeof(__pyx_k_nElementBoundaries_element), 0, 0, 1, 1},
28695  {&__pyx_n_s_nElementBoundaries_global, __pyx_k_nElementBoundaries_global, sizeof(__pyx_k_nElementBoundaries_global), 0, 0, 1, 1},
28696  {&__pyx_n_s_nElementBoundaryQuadraturePoints, __pyx_k_nElementBoundaryQuadraturePoints, sizeof(__pyx_k_nElementBoundaryQuadraturePoints), 0, 0, 1, 1},
28697  {&__pyx_n_s_nElementBoundaryQuadraturePoints_2, __pyx_k_nElementBoundaryQuadraturePoints_2, sizeof(__pyx_k_nElementBoundaryQuadraturePoints_2), 0, 0, 1, 1},
28698  {&__pyx_n_s_nElements_global, __pyx_k_nElements_global, sizeof(__pyx_k_nElements_global), 0, 0, 1, 1},
28699  {&__pyx_n_s_nElements_owned, __pyx_k_nElements_owned, sizeof(__pyx_k_nElements_owned), 0, 0, 1, 1},
28700  {&__pyx_n_s_nExteriorElementBoundaries_globa, __pyx_k_nExteriorElementBoundaries_globa, sizeof(__pyx_k_nExteriorElementBoundaries_globa), 0, 0, 1, 1},
28701  {&__pyx_n_s_nFreeDOF_global, __pyx_k_nFreeDOF_global, sizeof(__pyx_k_nFreeDOF_global), 0, 0, 1, 1},
28702  {&__pyx_n_s_nFreeVDOF_global, __pyx_k_nFreeVDOF_global, sizeof(__pyx_k_nFreeVDOF_global), 0, 0, 1, 1},
28703  {&__pyx_n_s_nI, __pyx_k_nI, sizeof(__pyx_k_nI), 0, 0, 1, 1},
28704  {&__pyx_n_s_nNodes_element, __pyx_k_nNodes_element, sizeof(__pyx_k_nNodes_element), 0, 0, 1, 1},
28705  {&__pyx_n_s_nNodes_global, __pyx_k_nNodes_global, sizeof(__pyx_k_nNodes_global), 0, 0, 1, 1},
28706  {&__pyx_n_s_nNodes_internal, __pyx_k_nNodes_internal, sizeof(__pyx_k_nNodes_internal), 0, 0, 1, 1},
28707  {&__pyx_n_s_nNonzerosInJacobian, __pyx_k_nNonzerosInJacobian, sizeof(__pyx_k_nNonzerosInJacobian), 0, 0, 1, 1},
28708  {&__pyx_n_s_nQuadraturePoints, __pyx_k_nQuadraturePoints, sizeof(__pyx_k_nQuadraturePoints), 0, 0, 1, 1},
28709  {&__pyx_n_s_nQuadraturePoints_element, __pyx_k_nQuadraturePoints_element, sizeof(__pyx_k_nQuadraturePoints_element), 0, 0, 1, 1},
28710  {&__pyx_n_s_nQuadraturePoints_elementBoundar, __pyx_k_nQuadraturePoints_elementBoundar, sizeof(__pyx_k_nQuadraturePoints_elementBoundar), 0, 0, 1, 1},
28711  {&__pyx_n_s_nQuadraturePoints_elementIn, __pyx_k_nQuadraturePoints_elementIn, sizeof(__pyx_k_nQuadraturePoints_elementIn), 0, 0, 1, 1},
28712  {&__pyx_n_s_nQuadraturePoints_global, __pyx_k_nQuadraturePoints_global, sizeof(__pyx_k_nQuadraturePoints_global), 0, 0, 1, 1},
28713  {&__pyx_n_s_nSpaceIn, __pyx_k_nSpaceIn, sizeof(__pyx_k_nSpaceIn), 0, 0, 1, 1},
28714  {&__pyx_n_s_nSpace_global, __pyx_k_nSpace_global, sizeof(__pyx_k_nSpace_global), 0, 0, 1, 1},
28715  {&__pyx_n_s_nSteps, __pyx_k_nSteps, sizeof(__pyx_k_nSteps), 0, 0, 1, 1},
28716  {&__pyx_n_s_nStepsToDelay, __pyx_k_nStepsToDelay, sizeof(__pyx_k_nStepsToDelay), 0, 0, 1, 1},
28717  {&__pyx_n_s_nVDOF_element, __pyx_k_nVDOF_element, sizeof(__pyx_k_nVDOF_element), 0, 0, 1, 1},
28718  {&__pyx_n_s_n_phi_ip_element, __pyx_k_n_phi_ip_element, sizeof(__pyx_k_n_phi_ip_element), 0, 0, 1, 1},
28719  {&__pyx_n_s_name, __pyx_k_name, sizeof(__pyx_k_name), 0, 0, 1, 1},
28720  {&__pyx_n_s_name_2, __pyx_k_name_2, sizeof(__pyx_k_name_2), 0, 0, 1, 1},
28721  {&__pyx_n_s_nc, __pyx_k_nc, sizeof(__pyx_k_nc), 0, 0, 1, 1},
28722  {&__pyx_n_s_nd, __pyx_k_nd, sizeof(__pyx_k_nd), 0, 0, 1, 1},
28723  {&__pyx_kp_u_ndarray_is_not_C_contiguous, __pyx_k_ndarray_is_not_C_contiguous, sizeof(__pyx_k_ndarray_is_not_C_contiguous), 0, 1, 0, 0},
28724  {&__pyx_kp_u_ndarray_is_not_Fortran_contiguou, __pyx_k_ndarray_is_not_Fortran_contiguou, sizeof(__pyx_k_ndarray_is_not_Fortran_contiguou), 0, 1, 0, 0},
28725  {&__pyx_n_s_nodeArray, __pyx_k_nodeArray, sizeof(__pyx_k_nodeArray), 0, 0, 1, 1},
28726  {&__pyx_n_s_nodeVelocityArray, __pyx_k_nodeVelocityArray, sizeof(__pyx_k_nodeVelocityArray), 0, 0, 1, 1},
28727  {&__pyx_n_s_nonlinear, __pyx_k_nonlinear, sizeof(__pyx_k_nonlinear), 0, 0, 1, 1},
28728  {&__pyx_n_s_nonlinear_function_evaluations, __pyx_k_nonlinear_function_evaluations, sizeof(__pyx_k_nonlinear_function_evaluations), 0, 0, 1, 1},
28729  {&__pyx_n_s_nonlinear_function_jacobian_eval, __pyx_k_nonlinear_function_jacobian_eval, sizeof(__pyx_k_nonlinear_function_jacobian_eval), 0, 0, 1, 1},
28730  {&__pyx_n_s_normal_ref, __pyx_k_normal_ref, sizeof(__pyx_k_normal_ref), 0, 0, 1, 1},
28731  {&__pyx_n_s_numDiff, __pyx_k_numDiff, sizeof(__pyx_k_numDiff), 0, 0, 1, 1},
28732  {&__pyx_n_s_numDiff_last, __pyx_k_numDiff_last, sizeof(__pyx_k_numDiff_last), 0, 0, 1, 1},
28733  {&__pyx_n_s_numericalFlux, __pyx_k_numericalFlux, sizeof(__pyx_k_numericalFlux), 0, 0, 1, 1},
28734  {&__pyx_n_s_numericalFluxType, __pyx_k_numericalFluxType, sizeof(__pyx_k_numericalFluxType), 0, 0, 1, 1},
28735  {&__pyx_n_s_numpy, __pyx_k_numpy, sizeof(__pyx_k_numpy), 0, 0, 1, 1},
28736  {&__pyx_kp_s_numpy_core_multiarray_failed_to, __pyx_k_numpy_core_multiarray_failed_to, sizeof(__pyx_k_numpy_core_multiarray_failed_to), 0, 0, 1, 0},
28737  {&__pyx_kp_s_numpy_core_umath_failed_to_impor, __pyx_k_numpy_core_umath_failed_to_impor, sizeof(__pyx_k_numpy_core_umath_failed_to_impor), 0, 0, 1, 0},
28738  {&__pyx_n_s_offset, __pyx_k_offset, sizeof(__pyx_k_offset), 0, 0, 1, 1},
28739  {&__pyx_n_s_offset_u, __pyx_k_offset_u, sizeof(__pyx_k_offset_u), 0, 0, 1, 1},
28740  {&__pyx_n_s_options, __pyx_k_options, sizeof(__pyx_k_options), 0, 0, 1, 1},
28741  {&__pyx_n_s_outFlow, __pyx_k_outFlow, sizeof(__pyx_k_outFlow), 0, 0, 1, 1},
28742  {&__pyx_n_s_pdb, __pyx_k_pdb, sizeof(__pyx_k_pdb), 0, 0, 1, 1},
28743  {&__pyx_n_s_penalty, __pyx_k_penalty, sizeof(__pyx_k_penalty), 0, 0, 1, 1},
28744  {&__pyx_n_s_penalty_constant, __pyx_k_penalty_constant, sizeof(__pyx_k_penalty_constant), 0, 0, 1, 1},
28745  {&__pyx_n_s_penalty_power, __pyx_k_penalty_power, sizeof(__pyx_k_penalty_power), 0, 0, 1, 1},
28746  {&__pyx_n_s_periodicDirichletConditions, __pyx_k_periodicDirichletConditions, sizeof(__pyx_k_periodicDirichletConditions), 0, 0, 1, 1},
28747  {&__pyx_n_s_phi, __pyx_k_phi, sizeof(__pyx_k_phi), 0, 0, 1, 1},
28748  {&__pyx_n_s_phiDict, __pyx_k_phiDict, sizeof(__pyx_k_phiDict), 0, 0, 1, 1},
28749  {&__pyx_n_s_phiTrialIsTrial, __pyx_k_phiTrialIsTrial, sizeof(__pyx_k_phiTrialIsTrial), 0, 0, 1, 1},
28750  {&__pyx_n_s_phi_ip, __pyx_k_phi_ip, sizeof(__pyx_k_phi_ip), 0, 0, 1, 1},
28751  {&__pyx_n_s_phi_k, __pyx_k_phi_k, sizeof(__pyx_k_phi_k), 0, 0, 1, 1},
28752  {&__pyx_n_s_points_elementBoundaryQuadrature, __pyx_k_points_elementBoundaryQuadrature, sizeof(__pyx_k_points_elementBoundaryQuadrature), 0, 0, 1, 1},
28753  {&__pyx_n_s_potential, __pyx_k_potential, sizeof(__pyx_k_potential), 0, 0, 1, 1},
28754  {&__pyx_n_s_prepare, __pyx_k_prepare, sizeof(__pyx_k_prepare), 0, 0, 1, 1},
28755  {&__pyx_n_s_proteus, __pyx_k_proteus, sizeof(__pyx_k_proteus), 0, 0, 1, 1},
28756  {&__pyx_n_s_proteus_FemTools, __pyx_k_proteus_FemTools, sizeof(__pyx_k_proteus_FemTools), 0, 0, 1, 1},
28757  {&__pyx_n_s_proteus_NonlinearSolvers, __pyx_k_proteus_NonlinearSolvers, sizeof(__pyx_k_proteus_NonlinearSolvers), 0, 0, 1, 1},
28758  {&__pyx_n_s_proteus_Profiling, __pyx_k_proteus_Profiling, sizeof(__pyx_k_proteus_Profiling), 0, 0, 1, 1},
28759  {&__pyx_n_s_proteus_ShockCapturing, __pyx_k_proteus_ShockCapturing, sizeof(__pyx_k_proteus_ShockCapturing), 0, 0, 1, 1},
28760  {&__pyx_n_s_proteus_SubgridError, __pyx_k_proteus_SubgridError, sizeof(__pyx_k_proteus_SubgridError), 0, 0, 1, 1},
28761  {&__pyx_n_s_proteus_Transport, __pyx_k_proteus_Transport, sizeof(__pyx_k_proteus_Transport), 0, 0, 1, 1},
28762  {&__pyx_n_s_proteus_TransportCoefficients, __pyx_k_proteus_TransportCoefficients, sizeof(__pyx_k_proteus_TransportCoefficients), 0, 0, 1, 1},
28763  {&__pyx_n_s_proteus_ctransportCoefficients, __pyx_k_proteus_ctransportCoefficients, sizeof(__pyx_k_proteus_ctransportCoefficients), 0, 0, 1, 1},
28764  {&__pyx_n_s_proteus_flcbdfWrappers, __pyx_k_proteus_flcbdfWrappers, sizeof(__pyx_k_proteus_flcbdfWrappers), 0, 0, 1, 1},
28765  {&__pyx_n_s_psi, __pyx_k_psi, sizeof(__pyx_k_psi), 0, 0, 1, 1},
28766  {&__pyx_n_s_psi_trace, __pyx_k_psi_trace, sizeof(__pyx_k_psi_trace), 0, 0, 1, 1},
28767  {&__pyx_n_s_q, __pyx_k_q, sizeof(__pyx_k_q), 0, 0, 1, 1},
28768  {&__pyx_n_s_q_a, __pyx_k_q_a, sizeof(__pyx_k_q_a), 0, 0, 1, 1},
28769  {&__pyx_n_s_q_numDiff_u, __pyx_k_q_numDiff_u, sizeof(__pyx_k_q_numDiff_u), 0, 0, 1, 1},
28770  {&__pyx_n_s_q_numDiff_u_last, __pyx_k_q_numDiff_u_last, sizeof(__pyx_k_q_numDiff_u_last), 0, 0, 1, 1},
28771  {&__pyx_n_s_q_r, __pyx_k_q_r, sizeof(__pyx_k_q_r), 0, 0, 1, 1},
28772  {&__pyx_n_s_q_v, __pyx_k_q_v, sizeof(__pyx_k_q_v), 0, 0, 1, 1},
28773  {&__pyx_n_s_qualname, __pyx_k_qualname, sizeof(__pyx_k_qualname), 0, 0, 1, 1},
28774  {&__pyx_n_s_r, __pyx_k_r, sizeof(__pyx_k_r), 0, 0, 1, 1},
28775  {&__pyx_n_s_range, __pyx_k_range, sizeof(__pyx_k_range), 0, 0, 1, 1},
28776  {&__pyx_n_s_reaction, __pyx_k_reaction, sizeof(__pyx_k_reaction), 0, 0, 1, 1},
28777  {&__pyx_n_s_reactionLumping, __pyx_k_reactionLumping, sizeof(__pyx_k_reactionLumping), 0, 0, 1, 1},
28778  {&__pyx_n_s_referenceFiniteElement, __pyx_k_referenceFiniteElement, sizeof(__pyx_k_referenceFiniteElement), 0, 0, 1, 1},
28779  {&__pyx_n_s_reuse_test_trial_quadrature, __pyx_k_reuse_test_trial_quadrature, sizeof(__pyx_k_reuse_test_trial_quadrature), 0, 0, 1, 1},
28780  {&__pyx_n_s_reuse_trial_and_test_quadrature, __pyx_k_reuse_trial_and_test_quadrature, sizeof(__pyx_k_reuse_trial_and_test_quadrature), 0, 0, 1, 1},
28781  {&__pyx_n_s_row, __pyx_k_row, sizeof(__pyx_k_row), 0, 0, 1, 1},
28782  {&__pyx_n_s_sc_alpha, __pyx_k_sc_alpha, sizeof(__pyx_k_sc_alpha), 0, 0, 1, 1},
28783  {&__pyx_n_s_sc_beta, __pyx_k_sc_beta, sizeof(__pyx_k_sc_beta), 0, 0, 1, 1},
28784  {&__pyx_n_s_sc_uref, __pyx_k_sc_uref, sizeof(__pyx_k_sc_uref), 0, 0, 1, 1},
28785  {&__pyx_n_s_scalars_elementBoundaryQuadratur, __pyx_k_scalars_elementBoundaryQuadratur, sizeof(__pyx_k_scalars_elementBoundaryQuadratur), 0, 0, 1, 1},
28786  {&__pyx_n_s_sd, __pyx_k_sd, sizeof(__pyx_k_sd), 0, 0, 1, 1},
28787  {&__pyx_n_s_sdInfo, __pyx_k_sdInfo, sizeof(__pyx_k_sdInfo), 0, 0, 1, 1},
28788  {&__pyx_n_s_sdInfo_u_u_colind, __pyx_k_sdInfo_u_u_colind, sizeof(__pyx_k_sdInfo_u_u_colind), 0, 0, 1, 1},
28789  {&__pyx_n_s_sdInfo_u_u_rowptr, __pyx_k_sdInfo_u_u_rowptr, sizeof(__pyx_k_sdInfo_u_u_rowptr), 0, 0, 1, 1},
28790  {&__pyx_n_s_self, __pyx_k_self, sizeof(__pyx_k_self), 0, 0, 1, 1},
28791  {&__pyx_n_s_setDirichletValues, __pyx_k_setDirichletValues, sizeof(__pyx_k_setDirichletValues), 0, 0, 1, 1},
28792  {&__pyx_n_s_setFlow, __pyx_k_setFlow, sizeof(__pyx_k_setFlow), 0, 0, 1, 1},
28793  {&__pyx_n_s_setFromOptions, __pyx_k_setFromOptions, sizeof(__pyx_k_setFromOptions), 0, 0, 1, 1},
28794  {&__pyx_n_s_setUnknowns, __pyx_k_setUnknowns, sizeof(__pyx_k_setUnknowns), 0, 0, 1, 1},
28795  {&__pyx_n_s_setupFieldStrides, __pyx_k_setupFieldStrides, sizeof(__pyx_k_setupFieldStrides), 0, 0, 1, 1},
28796  {&__pyx_n_s_shape, __pyx_k_shape, sizeof(__pyx_k_shape), 0, 0, 1, 1},
28797  {&__pyx_n_s_shockCapturing, __pyx_k_shockCapturing, sizeof(__pyx_k_shockCapturing), 0, 0, 1, 1},
28798  {&__pyx_n_s_shockCapturingDiffusion, __pyx_k_shockCapturingDiffusion, sizeof(__pyx_k_shockCapturingDiffusion), 0, 0, 1, 1},
28799  {&__pyx_n_s_shockCapturingFactor, __pyx_k_shockCapturingFactor, sizeof(__pyx_k_shockCapturingFactor), 0, 0, 1, 1},
28800  {&__pyx_n_s_size, __pyx_k_size, sizeof(__pyx_k_size), 0, 0, 1, 1},
28801  {&__pyx_n_s_sparseDiffusionTensors, __pyx_k_sparseDiffusionTensors, sizeof(__pyx_k_sparseDiffusionTensors), 0, 0, 1, 1},
28802  {&__pyx_n_s_stab, __pyx_k_stab, sizeof(__pyx_k_stab), 0, 0, 1, 1},
28803  {&__pyx_n_s_stabilization, __pyx_k_stabilization, sizeof(__pyx_k_stabilization), 0, 0, 1, 1},
28804  {&__pyx_n_s_stabilizationIsNonlinear, __pyx_k_stabilizationIsNonlinear, sizeof(__pyx_k_stabilizationIsNonlinear), 0, 0, 1, 1},
28805  {&__pyx_n_s_start, __pyx_k_start, sizeof(__pyx_k_start), 0, 0, 1, 1},
28806  {&__pyx_n_s_step, __pyx_k_step, sizeof(__pyx_k_step), 0, 0, 1, 1},
28807  {&__pyx_n_s_stop, __pyx_k_stop, sizeof(__pyx_k_stop), 0, 0, 1, 1},
28808  {&__pyx_n_s_stressTraceBoundaryConditionsSet, __pyx_k_stressTraceBoundaryConditionsSet, sizeof(__pyx_k_stressTraceBoundaryConditionsSet), 0, 0, 1, 1},
28809  {&__pyx_n_s_stride, __pyx_k_stride, sizeof(__pyx_k_stride), 0, 0, 1, 1},
28810  {&__pyx_kp_s_stride_offset, __pyx_k_stride_offset, sizeof(__pyx_k_stride_offset), 0, 0, 1, 0},
28811  {&__pyx_n_s_stride_u, __pyx_k_stride_u, sizeof(__pyx_k_stride_u), 0, 0, 1, 1},
28812  {&__pyx_n_s_sum, __pyx_k_sum, sizeof(__pyx_k_sum), 0, 0, 1, 1},
28813  {&__pyx_n_s_t, __pyx_k_t, sizeof(__pyx_k_t), 0, 0, 1, 1},
28814  {&__pyx_n_s_tLast_mesh, __pyx_k_tLast_mesh, sizeof(__pyx_k_tLast_mesh), 0, 0, 1, 1},
28815  {&__pyx_n_s_tensors_elementBoundaryQuadratur, __pyx_k_tensors_elementBoundaryQuadratur, sizeof(__pyx_k_tensors_elementBoundaryQuadratur), 0, 0, 1, 1},
28816  {&__pyx_n_s_test, __pyx_k_test, sizeof(__pyx_k_test), 0, 0, 1, 1},
28817  {&__pyx_n_s_testIsTrial, __pyx_k_testIsTrial, sizeof(__pyx_k_testIsTrial), 0, 0, 1, 1},
28818  {&__pyx_n_s_testSpace, __pyx_k_testSpace, sizeof(__pyx_k_testSpace), 0, 0, 1, 1},
28819  {&__pyx_n_s_testSpaceDict, __pyx_k_testSpaceDict, sizeof(__pyx_k_testSpaceDict), 0, 0, 1, 1},
28820  {&__pyx_n_s_timeIntegration, __pyx_k_timeIntegration, sizeof(__pyx_k_timeIntegration), 0, 0, 1, 1},
28821  {&__pyx_n_s_timeTerm, __pyx_k_timeTerm, sizeof(__pyx_k_timeTerm), 0, 0, 1, 1},
28822  {&__pyx_n_s_timeVaryingCoefficients, __pyx_k_timeVaryingCoefficients, sizeof(__pyx_k_timeVaryingCoefficients), 0, 0, 1, 1},
28823  {&__pyx_kp_s_to_reuse_test_trial_quad_all_fem, __pyx_k_to_reuse_test_trial_quad_all_fem, sizeof(__pyx_k_to_reuse_test_trial_quad_all_fem), 0, 0, 1, 0},
28824  {&__pyx_n_s_u, __pyx_k_u, sizeof(__pyx_k_u), 0, 0, 1, 1},
28825  {&__pyx_n_s_uDict, __pyx_k_uDict, sizeof(__pyx_k_uDict), 0, 0, 1, 1},
28826  {&__pyx_n_s_u_dof, __pyx_k_u_dof, sizeof(__pyx_k_u_dof), 0, 0, 1, 1},
28827  {&__pyx_n_s_u_grad_test_ref, __pyx_k_u_grad_test_ref, sizeof(__pyx_k_u_grad_test_ref), 0, 0, 1, 1},
28828  {&__pyx_n_s_u_grad_test_trace_ref, __pyx_k_u_grad_test_trace_ref, sizeof(__pyx_k_u_grad_test_trace_ref), 0, 0, 1, 1},
28829  {&__pyx_n_s_u_grad_trial_ref, __pyx_k_u_grad_trial_ref, sizeof(__pyx_k_u_grad_trial_ref), 0, 0, 1, 1},
28830  {&__pyx_n_s_u_grad_trial_trace_ref, __pyx_k_u_grad_trial_trace_ref, sizeof(__pyx_k_u_grad_trial_trace_ref), 0, 0, 1, 1},
28831  {&__pyx_n_s_u_j, __pyx_k_u_j, sizeof(__pyx_k_u_j), 0, 0, 1, 1},
28832  {&__pyx_n_s_u_l2g, __pyx_k_u_l2g, sizeof(__pyx_k_u_l2g), 0, 0, 1, 1},
28833  {&__pyx_n_s_u_test_ref, __pyx_k_u_test_ref, sizeof(__pyx_k_u_test_ref), 0, 0, 1, 1},
28834  {&__pyx_n_s_u_test_trace_ref, __pyx_k_u_test_trace_ref, sizeof(__pyx_k_u_test_trace_ref), 0, 0, 1, 1},
28835  {&__pyx_n_s_u_trial_ref, __pyx_k_u_trial_ref, sizeof(__pyx_k_u_trial_ref), 0, 0, 1, 1},
28836  {&__pyx_n_s_u_trial_trace_ref, __pyx_k_u_trial_trace_ref, sizeof(__pyx_k_u_trial_trace_ref), 0, 0, 1, 1},
28837  {&__pyx_n_s_ua, __pyx_k_ua, sizeof(__pyx_k_ua), 0, 0, 1, 1},
28838  {&__pyx_kp_u_unknown_dtype_code_in_numpy_pxd, __pyx_k_unknown_dtype_code_in_numpy_pxd, sizeof(__pyx_k_unknown_dtype_code_in_numpy_pxd), 0, 1, 0, 0},
28839  {&__pyx_n_s_updateLocal2Global, __pyx_k_updateLocal2Global, sizeof(__pyx_k_updateLocal2Global), 0, 0, 1, 1},
28840  {&__pyx_n_s_updateShockCapturingHistory, __pyx_k_updateShockCapturingHistory, sizeof(__pyx_k_updateShockCapturingHistory), 0, 0, 1, 1},
28841  {&__pyx_n_s_updateSubgridErrorHistory, __pyx_k_updateSubgridErrorHistory, sizeof(__pyx_k_updateSubgridErrorHistory), 0, 0, 1, 1},
28842  {&__pyx_n_s_useMetrics, __pyx_k_useMetrics, sizeof(__pyx_k_useMetrics), 0, 0, 1, 1},
28843  {&__pyx_n_s_useSparseDiffusion, __pyx_k_useSparseDiffusion, sizeof(__pyx_k_useSparseDiffusion), 0, 0, 1, 1},
28844  {&__pyx_n_s_useWeakDirichletConditions, __pyx_k_useWeakDirichletConditions, sizeof(__pyx_k_useWeakDirichletConditions), 0, 0, 1, 1},
28845  {&__pyx_n_s_usesGradientStabilization, __pyx_k_usesGradientStabilization, sizeof(__pyx_k_usesGradientStabilization), 0, 0, 1, 1},
28846  {&__pyx_n_s_values, __pyx_k_values, sizeof(__pyx_k_values), 0, 0, 1, 1},
28847  {&__pyx_n_s_variableNames, __pyx_k_variableNames, sizeof(__pyx_k_variableNames), 0, 0, 1, 1},
28848  {&__pyx_n_s_vectors_elementBoundaryQuadratur, __pyx_k_vectors_elementBoundaryQuadratur, sizeof(__pyx_k_vectors_elementBoundaryQuadratur), 0, 0, 1, 1},
28849  {&__pyx_n_s_velocity, __pyx_k_velocity, sizeof(__pyx_k_velocity), 0, 0, 1, 1},
28850  {&__pyx_n_s_velocityPostProcessor, __pyx_k_velocityPostProcessor, sizeof(__pyx_k_velocityPostProcessor), 0, 0, 1, 1},
28851  {&__pyx_kp_s_velocity_postprocessor, __pyx_k_velocity_postprocessor, sizeof(__pyx_k_velocity_postprocessor), 0, 0, 1, 0},
28852  {&__pyx_n_s_vt, __pyx_k_vt, sizeof(__pyx_k_vt), 0, 0, 1, 1},
28853  {&__pyx_n_s_weakDirichletConditions, __pyx_k_weakDirichletConditions, sizeof(__pyx_k_weakDirichletConditions), 0, 0, 1, 1},
28854  {&__pyx_n_s_x, __pyx_k_x, sizeof(__pyx_k_x), 0, 0, 1, 1},
28855  {&__pyx_n_s_zeroJacobian_CSR, __pyx_k_zeroJacobian_CSR, sizeof(__pyx_k_zeroJacobian_CSR), 0, 0, 1, 1},
28856  {&__pyx_n_s_zeros, __pyx_k_zeros, sizeof(__pyx_k_zeros), 0, 0, 1, 1},
28857  {0, 0, 0, 0, 0, 0, 0}
28858 };
28859 static int __Pyx_InitCachedBuiltins(void) {
28860  __pyx_builtin_range = __Pyx_GetBuiltinName(__pyx_n_s_range); if (!__pyx_builtin_range) __PYX_ERR(0, 422, __pyx_L1_error)
28861  __pyx_builtin_sum = __Pyx_GetBuiltinName(__pyx_n_s_sum); if (!__pyx_builtin_sum) __PYX_ERR(0, 683, __pyx_L1_error)
28862  __pyx_builtin_enumerate = __Pyx_GetBuiltinName(__pyx_n_s_enumerate); if (!__pyx_builtin_enumerate) __PYX_ERR(0, 831, __pyx_L1_error)
28863  __pyx_builtin_ValueError = __Pyx_GetBuiltinName(__pyx_n_s_ValueError); if (!__pyx_builtin_ValueError) __PYX_ERR(1, 218, __pyx_L1_error)
28864  __pyx_builtin_RuntimeError = __Pyx_GetBuiltinName(__pyx_n_s_RuntimeError); if (!__pyx_builtin_RuntimeError) __PYX_ERR(1, 799, __pyx_L1_error)
28865  __pyx_builtin_ImportError = __Pyx_GetBuiltinName(__pyx_n_s_ImportError); if (!__pyx_builtin_ImportError) __PYX_ERR(1, 989, __pyx_L1_error)
28866  return 0;
28867  __pyx_L1_error:;
28868  return -1;
28869 }
28870 
28871 static int __Pyx_InitCachedConstants(void) {
28872  __Pyx_RefNannyDeclarations
28873  __Pyx_RefNannySetupContext("__Pyx_InitCachedConstants", 0);
28874 
28875  /* "ADR.pyx":415
28876  * self.nSteps=0
28877  * if self.lag:
28878  * log("ADR.ShockCapturing: lagging requested but must lag the first step; switching lagging off and delaying") # <<<<<<<<<<<<<<
28879  * self.nStepsToDelay=1
28880  * self.lag=False
28881  */
28882  __pyx_tuple_ = PyTuple_Pack(1, __pyx_kp_s_ADR_ShockCapturing_lagging_reque); if (unlikely(!__pyx_tuple_)) __PYX_ERR(0, 415, __pyx_L1_error)
28883  __Pyx_GOTREF(__pyx_tuple_);
28884  __Pyx_GIVEREF(__pyx_tuple_);
28885 
28886  /* "ADR.pyx":429
28887  * if self.lag:
28888  * for ci in range(self.nc):
28889  * self.numDiff_last[ci][:] = self.numDiff[ci] # <<<<<<<<<<<<<<
28890  * if self.lag == False and self.nStepsToDelay is not None and self.nSteps > self.nStepsToDelay:
28891  * log("ADR.ShockCapturing: switched to lagged shock capturing")
28892  */
28893  __pyx_slice__2 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__2)) __PYX_ERR(0, 429, __pyx_L1_error)
28894  __Pyx_GOTREF(__pyx_slice__2);
28895  __Pyx_GIVEREF(__pyx_slice__2);
28896 
28897  /* "ADR.pyx":431
28898  * self.numDiff_last[ci][:] = self.numDiff[ci]
28899  * if self.lag == False and self.nStepsToDelay is not None and self.nSteps > self.nStepsToDelay:
28900  * log("ADR.ShockCapturing: switched to lagged shock capturing") # <<<<<<<<<<<<<<
28901  * self.lag = True
28902  * self.numDiff_last=[]
28903  */
28904  __pyx_tuple__3 = PyTuple_Pack(1, __pyx_kp_s_ADR_ShockCapturing_switched_to_l); if (unlikely(!__pyx_tuple__3)) __PYX_ERR(0, 431, __pyx_L1_error)
28905  __Pyx_GOTREF(__pyx_tuple__3);
28906  __Pyx_GIVEREF(__pyx_tuple__3);
28907 
28908  /* "ADR.pyx":500
28909  * potential[i] = {i : 'u'}
28910  * #end i
28911  * sdInfo = {(0,0):(numpy.arange(start=0,stop=self.nd**2+1,step=self.nd,dtype='i'), # <<<<<<<<<<<<<<
28912  * numpy.array([range(self.nd) for row in range(self.nd)],dtype='i'))}
28913  * TC_base.__init__(self,
28914  */
28915  __pyx_tuple__4 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__4)) __PYX_ERR(0, 500, __pyx_L1_error)
28916  __Pyx_GOTREF(__pyx_tuple__4);
28917  __Pyx_GIVEREF(__pyx_tuple__4);
28918 
28919  /* "ADR.pyx":519
28920  * if cq.has_key(('df',ci,ci)):
28921  * if self.velocity is not None:
28922  * cq[('df',ci,ci)][...,:] = self.velocity # <<<<<<<<<<<<<<
28923  * else:
28924  * cq[('df',ci,ci)].flat[:] = 0.0
28925  */
28926  __pyx_slice__5 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__5)) __PYX_ERR(0, 519, __pyx_L1_error)
28927  __Pyx_GOTREF(__pyx_slice__5);
28928  __Pyx_GIVEREF(__pyx_slice__5);
28929  __pyx_tuple__6 = PyTuple_Pack(2, Py_Ellipsis, __pyx_slice__5); if (unlikely(!__pyx_tuple__6)) __PYX_ERR(0, 519, __pyx_L1_error)
28930  __Pyx_GOTREF(__pyx_tuple__6);
28931  __Pyx_GIVEREF(__pyx_tuple__6);
28932 
28933  /* "ADR.pyx":521
28934  * cq[('df',ci,ci)][...,:] = self.velocity
28935  * else:
28936  * cq[('df',ci,ci)].flat[:] = 0.0 # <<<<<<<<<<<<<<
28937  * for i in range(len(cq[('r',ci)].flat)):
28938  * cq[('r',ci)].flat[i] = -self.fOfX[ci](cq['x'].flat[3*i:3*(i+1)])
28939  */
28940  __pyx_slice__7 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__7)) __PYX_ERR(0, 521, __pyx_L1_error)
28941  __Pyx_GOTREF(__pyx_slice__7);
28942  __Pyx_GIVEREF(__pyx_slice__7);
28943 
28944  /* "ADR.pyx":531
28945  * if c.has_key(('df',ci,ci)):
28946  * if self.velocity is not None:
28947  * c[('df',ci,ci)][...,:] = self.velocity # <<<<<<<<<<<<<<
28948  * else:
28949  * c[('df',ci,ci)].flat[:] = 0.0
28950  */
28951  __pyx_slice__8 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__8)) __PYX_ERR(0, 531, __pyx_L1_error)
28952  __Pyx_GOTREF(__pyx_slice__8);
28953  __Pyx_GIVEREF(__pyx_slice__8);
28954  __pyx_tuple__9 = PyTuple_Pack(2, Py_Ellipsis, __pyx_slice__8); if (unlikely(!__pyx_tuple__9)) __PYX_ERR(0, 531, __pyx_L1_error)
28955  __Pyx_GOTREF(__pyx_tuple__9);
28956  __Pyx_GIVEREF(__pyx_tuple__9);
28957 
28958  /* "ADR.pyx":533
28959  * c[('df',ci,ci)][...,:] = self.velocity
28960  * else:
28961  * c[('df',ci,ci)].flat[:] = 0.0 # <<<<<<<<<<<<<<
28962  * if c.has_key(('r',ci)) and c.has_key(('a',ci,ci)):
28963  * for i in range(len(c[('u',ci)].flat)):
28964  */
28965  __pyx_slice__10 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__10)) __PYX_ERR(0, 533, __pyx_L1_error)
28966  __Pyx_GOTREF(__pyx_slice__10);
28967  __Pyx_GIVEREF(__pyx_slice__10);
28968 
28969  /* "ADR.pyx":544
28970  * if c.has_key(('df',ci,ci)):
28971  * if self.velocity is not None:
28972  * c[('df',ci,ci)][...,:] = self.velocity # <<<<<<<<<<<<<<
28973  * else:
28974  * c[('df',ci,ci)].flat[:] = 0.0
28975  */
28976  __pyx_slice__11 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__11)) __PYX_ERR(0, 544, __pyx_L1_error)
28977  __Pyx_GOTREF(__pyx_slice__11);
28978  __Pyx_GIVEREF(__pyx_slice__11);
28979  __pyx_tuple__12 = PyTuple_Pack(2, Py_Ellipsis, __pyx_slice__11); if (unlikely(!__pyx_tuple__12)) __PYX_ERR(0, 544, __pyx_L1_error)
28980  __Pyx_GOTREF(__pyx_tuple__12);
28981  __Pyx_GIVEREF(__pyx_tuple__12);
28982 
28983  /* "ADR.pyx":546
28984  * c[('df',ci,ci)][...,:] = self.velocity
28985  * else:
28986  * c[('df',ci,ci)].flat[:] = 0.0 # <<<<<<<<<<<<<<
28987  * if c.has_key(('r',ci)) and c.has_key(('a',ci,ci)):
28988  * for i in range(len(c[('u',ci)].flat)):
28989  */
28990  __pyx_slice__13 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__13)) __PYX_ERR(0, 546, __pyx_L1_error)
28991  __Pyx_GOTREF(__pyx_slice__13);
28992  __Pyx_GIVEREF(__pyx_slice__13);
28993 
28994  /* "ADR.pyx":556
28995  * for ci in range(self.nc):
28996  * if self.velocity is not None:
28997  * c[('df',ci,ci)][...,:] = self.velocity # <<<<<<<<<<<<<<
28998  * else:
28999  * c[('df',ci,ci)].flat[:] = 0.0
29000  */
29001  __pyx_slice__14 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__14)) __PYX_ERR(0, 556, __pyx_L1_error)
29002  __Pyx_GOTREF(__pyx_slice__14);
29003  __Pyx_GIVEREF(__pyx_slice__14);
29004  __pyx_tuple__15 = PyTuple_Pack(2, Py_Ellipsis, __pyx_slice__14); if (unlikely(!__pyx_tuple__15)) __PYX_ERR(0, 556, __pyx_L1_error)
29005  __Pyx_GOTREF(__pyx_tuple__15);
29006  __Pyx_GIVEREF(__pyx_tuple__15);
29007 
29008  /* "ADR.pyx":558
29009  * c[('df',ci,ci)][...,:] = self.velocity
29010  * else:
29011  * c[('df',ci,ci)].flat[:] = 0.0 # <<<<<<<<<<<<<<
29012  * for i in range(len(c[('r',ci)].flat)):
29013  * c[('r',ci)].flat[i] = -self.fOfX[ci](c['x'].flat[3*i:3*(i+1)])
29014  */
29015  __pyx_slice__16 = PySlice_New(Py_None, Py_None, Py_None); if (unlikely(!__pyx_slice__16)) __PYX_ERR(0, 558, __pyx_L1_error)
29016  __Pyx_GOTREF(__pyx_slice__16);
29017  __Pyx_GIVEREF(__pyx_slice__16);
29018 
29019  /* "ADR.pyx":707
29020  * if elemQuadIsDict:
29021  * if elementQuadrature.has_key(I):
29022  * elementQuadratureDict[('stab',)+I[1:]] = elementQuadrature[I] # <<<<<<<<<<<<<<
29023  * else:
29024  * elementQuadratureDict[('stab',)+I[1:]] = elementQuadrature['default']
29025  */
29026  __pyx_tuple__17 = PyTuple_Pack(1, __pyx_n_s_stab); if (unlikely(!__pyx_tuple__17)) __PYX_ERR(0, 707, __pyx_L1_error)
29027  __Pyx_GOTREF(__pyx_tuple__17);
29028  __Pyx_GIVEREF(__pyx_tuple__17);
29029  __pyx_slice__18 = PySlice_New(__pyx_int_1, Py_None, Py_None); if (unlikely(!__pyx_slice__18)) __PYX_ERR(0, 707, __pyx_L1_error)
29030  __Pyx_GOTREF(__pyx_slice__18);
29031  __Pyx_GIVEREF(__pyx_slice__18);
29032 
29033  /* "ADR.pyx":709
29034  * elementQuadratureDict[('stab',)+I[1:]] = elementQuadrature[I]
29035  * else:
29036  * elementQuadratureDict[('stab',)+I[1:]] = elementQuadrature['default'] # <<<<<<<<<<<<<<
29037  * else:
29038  * elementQuadratureDict[('stab',)+I[1:]] = elementQuadrature
29039  */
29040  __pyx_tuple__19 = PyTuple_Pack(1, __pyx_n_s_stab); if (unlikely(!__pyx_tuple__19)) __PYX_ERR(0, 709, __pyx_L1_error)
29041  __Pyx_GOTREF(__pyx_tuple__19);
29042  __Pyx_GIVEREF(__pyx_tuple__19);
29043  __pyx_slice__20 = PySlice_New(__pyx_int_1, Py_None, Py_None); if (unlikely(!__pyx_slice__20)) __PYX_ERR(0, 709, __pyx_L1_error)
29044  __Pyx_GOTREF(__pyx_slice__20);
29045  __Pyx_GIVEREF(__pyx_slice__20);
29046 
29047  /* "ADR.pyx":711
29048  * elementQuadratureDict[('stab',)+I[1:]] = elementQuadrature['default']
29049  * else:
29050  * elementQuadratureDict[('stab',)+I[1:]] = elementQuadrature # <<<<<<<<<<<<<<
29051  * if self.shockCapturing is not None:
29052  * for ci in self.shockCapturing.components:
29053  */
29054  __pyx_tuple__21 = PyTuple_Pack(1, __pyx_n_s_stab); if (unlikely(!__pyx_tuple__21)) __PYX_ERR(0, 711, __pyx_L1_error)
29055  __Pyx_GOTREF(__pyx_tuple__21);
29056  __Pyx_GIVEREF(__pyx_tuple__21);
29057  __pyx_slice__22 = PySlice_New(__pyx_int_1, Py_None, Py_None); if (unlikely(!__pyx_slice__22)) __PYX_ERR(0, 711, __pyx_L1_error)
29058  __Pyx_GOTREF(__pyx_slice__22);
29059  __Pyx_GIVEREF(__pyx_slice__22);
29060 
29061  /* "ADR.pyx":725
29062  * elementQuadratureDict[('m',ci)] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
29063  * for I in self.coefficients.elementIntegralKeys:
29064  * elementQuadratureDict[('stab',)+I[1:]] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1) # <<<<<<<<<<<<<<
29065  * if reactionLumping:
29066  * for ci in self.coefficients.mass.keys():
29067  */
29068  __pyx_tuple__23 = PyTuple_Pack(1, __pyx_n_s_stab); if (unlikely(!__pyx_tuple__23)) __PYX_ERR(0, 725, __pyx_L1_error)
29069  __Pyx_GOTREF(__pyx_tuple__23);
29070  __Pyx_GIVEREF(__pyx_tuple__23);
29071  __pyx_slice__24 = PySlice_New(__pyx_int_1, Py_None, Py_None); if (unlikely(!__pyx_slice__24)) __PYX_ERR(0, 725, __pyx_L1_error)
29072  __Pyx_GOTREF(__pyx_slice__24);
29073  __Pyx_GIVEREF(__pyx_slice__24);
29074 
29075  /* "ADR.pyx":730
29076  * elementQuadratureDict[('r',ci)] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1)
29077  * for I in self.coefficients.elementIntegralKeys:
29078  * elementQuadratureDict[('stab',)+I[1:]] = Quadrature.SimplexLobattoQuadrature(self.nSpace_global,1) # <<<<<<<<<<<<<<
29079  * elementBoundaryQuadratureDict={}
29080  * if isinstance(elementBoundaryQuadrature,dict): #set terms manually
29081  */
29082  __pyx_tuple__25 = PyTuple_Pack(1, __pyx_n_s_stab); if (unlikely(!__pyx_tuple__25)) __PYX_ERR(0, 730, __pyx_L1_error)
29083  __Pyx_GOTREF(__pyx_tuple__25);
29084  __Pyx_GIVEREF(__pyx_tuple__25);
29085  __pyx_slice__26 = PySlice_New(__pyx_int_1, Py_None, Py_None); if (unlikely(!__pyx_slice__26)) __PYX_ERR(0, 730, __pyx_L1_error)
29086  __Pyx_GOTREF(__pyx_slice__26);
29087  __Pyx_GIVEREF(__pyx_slice__26);
29088 
29089  /* "ADR.pyx":787
29090  * self.q['x'] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,3),'d')
29091  * self.ebqe['x'] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,3),'d')
29092  * self.q[('u',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d') # <<<<<<<<<<<<<<
29093  * self.q[('grad(u)',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d')
29094  * self.q[('a',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.coefficients.sdInfo[(0,0)][0][-1]),'d')
29095  */
29096  __pyx_tuple__27 = PyTuple_Pack(2, __pyx_n_s_u, __pyx_int_0); if (unlikely(!__pyx_tuple__27)) __PYX_ERR(0, 787, __pyx_L1_error)
29097  __Pyx_GOTREF(__pyx_tuple__27);
29098  __Pyx_GIVEREF(__pyx_tuple__27);
29099 
29100  /* "ADR.pyx":788
29101  * self.ebqe['x'] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,3),'d')
29102  * self.q[('u',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29103  * self.q[('grad(u)',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d') # <<<<<<<<<<<<<<
29104  * self.q[('a',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.coefficients.sdInfo[(0,0)][0][-1]),'d')
29105  * self.q[('df',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d')
29106  */
29107  __pyx_tuple__28 = PyTuple_Pack(2, __pyx_kp_s_grad_u, __pyx_int_0); if (unlikely(!__pyx_tuple__28)) __PYX_ERR(0, 788, __pyx_L1_error)
29108  __Pyx_GOTREF(__pyx_tuple__28);
29109  __Pyx_GIVEREF(__pyx_tuple__28);
29110 
29111  /* "ADR.pyx":789
29112  * self.q[('u',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29113  * self.q[('grad(u)',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d')
29114  * self.q[('a',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.coefficients.sdInfo[(0,0)][0][-1]),'d') # <<<<<<<<<<<<<<
29115  * self.q[('df',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d')
29116  * self.q[('r',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29117  */
29118  __pyx_tuple__29 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__29)) __PYX_ERR(0, 789, __pyx_L1_error)
29119  __Pyx_GOTREF(__pyx_tuple__29);
29120  __Pyx_GIVEREF(__pyx_tuple__29);
29121  __pyx_tuple__30 = PyTuple_Pack(3, __pyx_n_s_a, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__30)) __PYX_ERR(0, 789, __pyx_L1_error)
29122  __Pyx_GOTREF(__pyx_tuple__30);
29123  __Pyx_GIVEREF(__pyx_tuple__30);
29124 
29125  /* "ADR.pyx":790
29126  * self.q[('grad(u)',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d')
29127  * self.q[('a',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.coefficients.sdInfo[(0,0)][0][-1]),'d')
29128  * self.q[('df',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d') # <<<<<<<<<<<<<<
29129  * self.q[('r',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29130  * self.q[('cfl',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29131  */
29132  __pyx_tuple__31 = PyTuple_Pack(3, __pyx_n_s_df, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__31)) __PYX_ERR(0, 790, __pyx_L1_error)
29133  __Pyx_GOTREF(__pyx_tuple__31);
29134  __Pyx_GIVEREF(__pyx_tuple__31);
29135 
29136  /* "ADR.pyx":791
29137  * self.q[('a',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.coefficients.sdInfo[(0,0)][0][-1]),'d')
29138  * self.q[('df',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d')
29139  * self.q[('r',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d') # <<<<<<<<<<<<<<
29140  * self.q[('cfl',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29141  * self.q[('numDiff',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29142  */
29143  __pyx_tuple__32 = PyTuple_Pack(2, __pyx_n_s_r, __pyx_int_0); if (unlikely(!__pyx_tuple__32)) __PYX_ERR(0, 791, __pyx_L1_error)
29144  __Pyx_GOTREF(__pyx_tuple__32);
29145  __Pyx_GIVEREF(__pyx_tuple__32);
29146 
29147  /* "ADR.pyx":792
29148  * self.q[('df',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element,self.nSpace_global),'d')
29149  * self.q[('r',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29150  * self.q[('cfl',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d') # <<<<<<<<<<<<<<
29151  * self.q[('numDiff',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29152  *
29153  */
29154  __pyx_tuple__33 = PyTuple_Pack(2, __pyx_n_s_cfl, __pyx_int_0); if (unlikely(!__pyx_tuple__33)) __PYX_ERR(0, 792, __pyx_L1_error)
29155  __Pyx_GOTREF(__pyx_tuple__33);
29156  __Pyx_GIVEREF(__pyx_tuple__33);
29157 
29158  /* "ADR.pyx":793
29159  * self.q[('r',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29160  * self.q[('cfl',0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d')
29161  * self.q[('numDiff',0,0)] = numpy.zeros((self.mesh.nElements_global,self.nQuadraturePoints_element),'d') # <<<<<<<<<<<<<<
29162  *
29163  * self.ebqe['penalty'] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29164  */
29165  __pyx_tuple__34 = PyTuple_Pack(3, __pyx_n_s_numDiff, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__34)) __PYX_ERR(0, 793, __pyx_L1_error)
29166  __Pyx_GOTREF(__pyx_tuple__34);
29167  __Pyx_GIVEREF(__pyx_tuple__34);
29168 
29169  /* "ADR.pyx":796
29170  *
29171  * self.ebqe['penalty'] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29172  * self.ebqe[('u',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d') # <<<<<<<<<<<<<<
29173  * self.ebqe[('diffusiveFlux_bc_flag',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i')
29174  * self.ebqe[('diffusiveFlux_bc',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29175  */
29176  __pyx_tuple__35 = PyTuple_Pack(2, __pyx_n_s_u, __pyx_int_0); if (unlikely(!__pyx_tuple__35)) __PYX_ERR(0, 796, __pyx_L1_error)
29177  __Pyx_GOTREF(__pyx_tuple__35);
29178  __Pyx_GIVEREF(__pyx_tuple__35);
29179 
29180  /* "ADR.pyx":797
29181  * self.ebqe['penalty'] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29182  * self.ebqe[('u',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29183  * self.ebqe[('diffusiveFlux_bc_flag',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i') # <<<<<<<<<<<<<<
29184  * self.ebqe[('diffusiveFlux_bc',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29185  * self.ebqe[('advectiveFlux_bc_flag',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i')
29186  */
29187  __pyx_tuple__36 = PyTuple_Pack(3, __pyx_n_s_diffusiveFlux_bc_flag, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__36)) __PYX_ERR(0, 797, __pyx_L1_error)
29188  __Pyx_GOTREF(__pyx_tuple__36);
29189  __Pyx_GIVEREF(__pyx_tuple__36);
29190 
29191  /* "ADR.pyx":798
29192  * self.ebqe[('u',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29193  * self.ebqe[('diffusiveFlux_bc_flag',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i')
29194  * self.ebqe[('diffusiveFlux_bc',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d') # <<<<<<<<<<<<<<
29195  * self.ebqe[('advectiveFlux_bc_flag',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i')
29196  * self.ebqe[('advectiveFlux_bc',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29197  */
29198  __pyx_tuple__37 = PyTuple_Pack(3, __pyx_n_s_diffusiveFlux_bc, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__37)) __PYX_ERR(0, 798, __pyx_L1_error)
29199  __Pyx_GOTREF(__pyx_tuple__37);
29200  __Pyx_GIVEREF(__pyx_tuple__37);
29201 
29202  /* "ADR.pyx":799
29203  * self.ebqe[('diffusiveFlux_bc_flag',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i')
29204  * self.ebqe[('diffusiveFlux_bc',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29205  * self.ebqe[('advectiveFlux_bc_flag',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i') # <<<<<<<<<<<<<<
29206  * self.ebqe[('advectiveFlux_bc',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29207  * self.ebqe[('grad(u)',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d')
29208  */
29209  __pyx_tuple__38 = PyTuple_Pack(2, __pyx_n_s_advectiveFlux_bc_flag, __pyx_int_0); if (unlikely(!__pyx_tuple__38)) __PYX_ERR(0, 799, __pyx_L1_error)
29210  __Pyx_GOTREF(__pyx_tuple__38);
29211  __Pyx_GIVEREF(__pyx_tuple__38);
29212 
29213  /* "ADR.pyx":800
29214  * self.ebqe[('diffusiveFlux_bc',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29215  * self.ebqe[('advectiveFlux_bc_flag',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i')
29216  * self.ebqe[('advectiveFlux_bc',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d') # <<<<<<<<<<<<<<
29217  * self.ebqe[('grad(u)',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d')
29218  * self.ebqe[('a',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.coefficients.sdInfo[(0,0)][0][-1]),'d')
29219  */
29220  __pyx_tuple__39 = PyTuple_Pack(2, __pyx_n_s_advectiveFlux_bc, __pyx_int_0); if (unlikely(!__pyx_tuple__39)) __PYX_ERR(0, 800, __pyx_L1_error)
29221  __Pyx_GOTREF(__pyx_tuple__39);
29222  __Pyx_GIVEREF(__pyx_tuple__39);
29223 
29224  /* "ADR.pyx":801
29225  * self.ebqe[('advectiveFlux_bc_flag',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'i')
29226  * self.ebqe[('advectiveFlux_bc',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29227  * self.ebqe[('grad(u)',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d') # <<<<<<<<<<<<<<
29228  * self.ebqe[('a',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.coefficients.sdInfo[(0,0)][0][-1]),'d')
29229  * self.ebqe[('df',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d')
29230  */
29231  __pyx_tuple__40 = PyTuple_Pack(2, __pyx_kp_s_grad_u, __pyx_int_0); if (unlikely(!__pyx_tuple__40)) __PYX_ERR(0, 801, __pyx_L1_error)
29232  __Pyx_GOTREF(__pyx_tuple__40);
29233  __Pyx_GIVEREF(__pyx_tuple__40);
29234 
29235  /* "ADR.pyx":802
29236  * self.ebqe[('advectiveFlux_bc',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29237  * self.ebqe[('grad(u)',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d')
29238  * self.ebqe[('a',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.coefficients.sdInfo[(0,0)][0][-1]),'d') # <<<<<<<<<<<<<<
29239  * self.ebqe[('df',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d')
29240  * self.ebqe[('r',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29241  */
29242  __pyx_tuple__41 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__41)) __PYX_ERR(0, 802, __pyx_L1_error)
29243  __Pyx_GOTREF(__pyx_tuple__41);
29244  __Pyx_GIVEREF(__pyx_tuple__41);
29245  __pyx_tuple__42 = PyTuple_Pack(3, __pyx_n_s_a, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__42)) __PYX_ERR(0, 802, __pyx_L1_error)
29246  __Pyx_GOTREF(__pyx_tuple__42);
29247  __Pyx_GIVEREF(__pyx_tuple__42);
29248 
29249  /* "ADR.pyx":803
29250  * self.ebqe[('grad(u)',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d')
29251  * self.ebqe[('a',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.coefficients.sdInfo[(0,0)][0][-1]),'d')
29252  * self.ebqe[('df',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d') # <<<<<<<<<<<<<<
29253  * self.ebqe[('r',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d')
29254  *
29255  */
29256  __pyx_tuple__43 = PyTuple_Pack(3, __pyx_n_s_df, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__43)) __PYX_ERR(0, 803, __pyx_L1_error)
29257  __Pyx_GOTREF(__pyx_tuple__43);
29258  __Pyx_GIVEREF(__pyx_tuple__43);
29259 
29260  /* "ADR.pyx":804
29261  * self.ebqe[('a',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.coefficients.sdInfo[(0,0)][0][-1]),'d')
29262  * self.ebqe[('df',0,0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary,self.nSpace_global),'d')
29263  * self.ebqe[('r',0)] = numpy.zeros((self.mesh.nExteriorElementBoundaries_global,self.nElementBoundaryQuadraturePoints_elementBoundary),'d') # <<<<<<<<<<<<<<
29264  *
29265  * self.points_elementBoundaryQuadrature= set()
29266  */
29267  __pyx_tuple__44 = PyTuple_Pack(2, __pyx_n_s_r, __pyx_int_0); if (unlikely(!__pyx_tuple__44)) __PYX_ERR(0, 804, __pyx_L1_error)
29268  __Pyx_GOTREF(__pyx_tuple__44);
29269  __Pyx_GIVEREF(__pyx_tuple__44);
29270 
29271  /* "ADR.pyx":810
29272  * self.vectors_elementBoundaryQuadrature= set()
29273  * self.tensors_elementBoundaryQuadrature= set()
29274  * log(memory("element and element boundary Jacobians","OneLevelTransport"),level=4) # <<<<<<<<<<<<<<
29275  * self.inflowBoundaryBC = {}
29276  * self.inflowBoundaryBC_values = {}
29277  */
29278  __pyx_tuple__45 = PyTuple_Pack(2, __pyx_kp_s_element_and_element_boundary_Jac, __pyx_n_s_OneLevelTransport); if (unlikely(!__pyx_tuple__45)) __PYX_ERR(0, 810, __pyx_L1_error)
29279  __Pyx_GOTREF(__pyx_tuple__45);
29280  __Pyx_GIVEREF(__pyx_tuple__45);
29281 
29282  /* "ADR.pyx":836
29283  * del self.internalNodes
29284  * self.internalNodes = None
29285  * log("Updating local to global mappings",2) # <<<<<<<<<<<<<<
29286  * self.updateLocal2Global()
29287  * log("Building time integration object",2)
29288  */
29289  __pyx_tuple__46 = PyTuple_Pack(2, __pyx_kp_s_Updating_local_to_global_mapping, __pyx_int_2); if (unlikely(!__pyx_tuple__46)) __PYX_ERR(0, 836, __pyx_L1_error)
29290  __Pyx_GOTREF(__pyx_tuple__46);
29291  __Pyx_GIVEREF(__pyx_tuple__46);
29292 
29293  /* "ADR.pyx":838
29294  * log("Updating local to global mappings",2)
29295  * self.updateLocal2Global()
29296  * log("Building time integration object",2) # <<<<<<<<<<<<<<
29297  * log(memory("inflowBC, internalNodes,updateLocal2Global","OneLevelTransport"),level=4)
29298  * #mwf for interpolating subgrid error for gradients etc
29299  */
29300  __pyx_tuple__47 = PyTuple_Pack(2, __pyx_kp_s_Building_time_integration_object, __pyx_int_2); if (unlikely(!__pyx_tuple__47)) __PYX_ERR(0, 838, __pyx_L1_error)
29301  __Pyx_GOTREF(__pyx_tuple__47);
29302  __Pyx_GIVEREF(__pyx_tuple__47);
29303 
29304  /* "ADR.pyx":839
29305  * self.updateLocal2Global()
29306  * log("Building time integration object",2)
29307  * log(memory("inflowBC, internalNodes,updateLocal2Global","OneLevelTransport"),level=4) # <<<<<<<<<<<<<<
29308  * #mwf for interpolating subgrid error for gradients etc
29309  * if self.stabilization and self.stabilization.usesGradientStabilization:
29310  */
29311  __pyx_tuple__48 = PyTuple_Pack(2, __pyx_kp_s_inflowBC_internalNodes_updateLoc, __pyx_n_s_OneLevelTransport); if (unlikely(!__pyx_tuple__48)) __PYX_ERR(0, 839, __pyx_L1_error)
29312  __Pyx_GOTREF(__pyx_tuple__48);
29313  __Pyx_GIVEREF(__pyx_tuple__48);
29314 
29315  /* "ADR.pyx":848
29316  * if options is not None:
29317  * self.timeIntegration.setFromOptions(options)
29318  * log(memory("TimeIntegration","OneLevelTransport"),level=4) # <<<<<<<<<<<<<<
29319  * log("Calculating numerical quadrature formulas",2)
29320  * self.calculateQuadrature()
29321  */
29322  __pyx_tuple__49 = PyTuple_Pack(2, __pyx_n_s_TimeIntegration, __pyx_n_s_OneLevelTransport); if (unlikely(!__pyx_tuple__49)) __PYX_ERR(0, 848, __pyx_L1_error)
29323  __Pyx_GOTREF(__pyx_tuple__49);
29324  __Pyx_GIVEREF(__pyx_tuple__49);
29325 
29326  /* "ADR.pyx":849
29327  * self.timeIntegration.setFromOptions(options)
29328  * log(memory("TimeIntegration","OneLevelTransport"),level=4)
29329  * log("Calculating numerical quadrature formulas",2) # <<<<<<<<<<<<<<
29330  * self.calculateQuadrature()
29331  *
29332  */
29333  __pyx_tuple__50 = PyTuple_Pack(2, __pyx_kp_s_Calculating_numerical_quadrature, __pyx_int_2); if (unlikely(!__pyx_tuple__50)) __PYX_ERR(0, 849, __pyx_L1_error)
29334  __Pyx_GOTREF(__pyx_tuple__50);
29335  __Pyx_GIVEREF(__pyx_tuple__50);
29336 
29337  /* "ADR.pyx":859
29338  * self.setupFieldStrides()
29339  *
29340  * log(memory("stride+offset","OneLevelTransport"),level=4) # <<<<<<<<<<<<<<
29341  * if numericalFluxType is not None:
29342  * if options is None or options.periodicDirichletConditions is None:
29343  */
29344  __pyx_tuple__51 = PyTuple_Pack(2, __pyx_kp_s_stride_offset, __pyx_n_s_OneLevelTransport); if (unlikely(!__pyx_tuple__51)) __PYX_ERR(0, 859, __pyx_L1_error)
29345  __Pyx_GOTREF(__pyx_tuple__51);
29346  __Pyx_GIVEREF(__pyx_tuple__51);
29347 
29348  /* "ADR.pyx":876
29349  * #set penalty terms
29350  * #cek todo move into numerical flux initialization
29351  * if self.ebq_global.has_key('penalty'): # <<<<<<<<<<<<<<
29352  * for ebN in range(self.mesh.nElementBoundaries_global):
29353  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
29354  */
29355  __pyx_tuple__52 = PyTuple_Pack(1, __pyx_n_s_penalty); if (unlikely(!__pyx_tuple__52)) __PYX_ERR(0, 876, __pyx_L1_error)
29356  __Pyx_GOTREF(__pyx_tuple__52);
29357  __Pyx_GIVEREF(__pyx_tuple__52);
29358 
29359  /* "ADR.pyx":882
29360  * #penalty term
29361  * #cek move to Numerical flux initialization
29362  * if self.ebqe.has_key('penalty'): # <<<<<<<<<<<<<<
29363  * for ebNE in range(self.mesh.nExteriorElementBoundaries_global):
29364  * ebN = self.mesh.exteriorElementBoundariesArray[ebNE]
29365  */
29366  __pyx_tuple__53 = PyTuple_Pack(1, __pyx_n_s_penalty); if (unlikely(!__pyx_tuple__53)) __PYX_ERR(0, 882, __pyx_L1_error)
29367  __Pyx_GOTREF(__pyx_tuple__53);
29368  __Pyx_GIVEREF(__pyx_tuple__53);
29369 
29370  /* "ADR.pyx":887
29371  * for k in range(self.nElementBoundaryQuadraturePoints_elementBoundary):
29372  * self.ebqe['penalty'][ebNE,k] = self.numericalFlux.penalty_constant/self.mesh.elementBoundaryDiametersArray[ebN]**self.numericalFlux.penalty_power
29373  * log(memory("numericalFlux","OneLevelTransport"),level=4) # <<<<<<<<<<<<<<
29374  * self.elementEffectiveDiametersArray = self.mesh.elementInnerDiametersArray
29375  * #use post processing tools to get conservative fluxes, None by default
29376  */
29377  __pyx_tuple__54 = PyTuple_Pack(2, __pyx_n_s_numericalFlux, __pyx_n_s_OneLevelTransport); if (unlikely(!__pyx_tuple__54)) __PYX_ERR(0, 887, __pyx_L1_error)
29378  __Pyx_GOTREF(__pyx_tuple__54);
29379  __Pyx_GIVEREF(__pyx_tuple__54);
29380 
29381  /* "ADR.pyx":892
29382  * from proteus import PostProcessingTools
29383  * self.velocityPostProcessor = PostProcessingTools.VelocityPostProcessingChooser(self)
29384  * log(memory("velocity postprocessor","OneLevelTransport"),level=4) # <<<<<<<<<<<<<<
29385  * #helper for writing out data storage
29386  * from proteus import Archiver
29387  */
29388  __pyx_tuple__55 = PyTuple_Pack(2, __pyx_kp_s_velocity_postprocessor, __pyx_n_s_OneLevelTransport); if (unlikely(!__pyx_tuple__55)) __PYX_ERR(0, 892, __pyx_L1_error)
29389  __Pyx_GOTREF(__pyx_tuple__55);
29390  __Pyx_GIVEREF(__pyx_tuple__55);
29391 
29392  /* "ADR.pyx":943
29393  * Calculate the element residuals and add in to the global residual
29394  * """
29395  * r.fill(0.0) # <<<<<<<<<<<<<<
29396  * #Load the unknowns into the finite element dof
29397  * self.setUnknowns(u)
29398  */
29399  __pyx_tuple__56 = PyTuple_Pack(1, __pyx_float_0_0); if (unlikely(!__pyx_tuple__56)) __PYX_ERR(0, 943, __pyx_L1_error)
29400  __Pyx_GOTREF(__pyx_tuple__56);
29401  __Pyx_GIVEREF(__pyx_tuple__56);
29402 
29403  /* "ADR.pyx":954
29404  * self.mesh.nodeArray,
29405  * self.mesh.elementNodesArray,
29406  * self.elementQuadratureWeights[('u',0)], # <<<<<<<<<<<<<<
29407  * self.u[0].femSpace.psi,
29408  * self.u[0].femSpace.grad_psi,
29409  */
29410  __pyx_tuple__57 = PyTuple_Pack(2, __pyx_n_s_u, __pyx_int_0); if (unlikely(!__pyx_tuple__57)) __PYX_ERR(0, 954, __pyx_L1_error)
29411  __Pyx_GOTREF(__pyx_tuple__57);
29412  __Pyx_GIVEREF(__pyx_tuple__57);
29413 
29414  /* "ADR.pyx":960
29415  * self.u[0].femSpace.grad_psi,
29416  * self.mesh.elementDiametersArray,
29417  * self.q[('cfl',0)], # <<<<<<<<<<<<<<
29418  * self.shockCapturing.shockCapturingFactor,
29419  * self.coefficients.sc_uref,
29420  */
29421  __pyx_tuple__58 = PyTuple_Pack(2, __pyx_n_s_cfl, __pyx_int_0); if (unlikely(!__pyx_tuple__58)) __PYX_ERR(0, 960, __pyx_L1_error)
29422  __Pyx_GOTREF(__pyx_tuple__58);
29423  __Pyx_GIVEREF(__pyx_tuple__58);
29424 
29425  /* "ADR.pyx":968
29426  * self.u[0].femSpace.elementMaps.psi_trace,
29427  * self.u[0].femSpace.elementMaps.grad_psi_trace,
29428  * self.elementBoundaryQuadratureWeights[('u',0)], # <<<<<<<<<<<<<<
29429  * self.u[0].femSpace.psi_trace,
29430  * self.u[0].femSpace.grad_psi_trace,
29431  */
29432  __pyx_tuple__59 = PyTuple_Pack(2, __pyx_n_s_u, __pyx_int_0); if (unlikely(!__pyx_tuple__59)) __PYX_ERR(0, 968, __pyx_L1_error)
29433  __Pyx_GOTREF(__pyx_tuple__59);
29434  __Pyx_GIVEREF(__pyx_tuple__59);
29435 
29436  /* "ADR.pyx":979
29437  * self.u[0].femSpace.dofMap.l2g,
29438  * self.u[0].dof,
29439  * self.coefficients.sdInfo[(0,0)][0], # <<<<<<<<<<<<<<
29440  * self.coefficients.sdInfo[(0,0)][1],
29441  * self.q[('a',0,0)],
29442  */
29443  __pyx_tuple__60 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__60)) __PYX_ERR(0, 979, __pyx_L1_error)
29444  __Pyx_GOTREF(__pyx_tuple__60);
29445  __Pyx_GIVEREF(__pyx_tuple__60);
29446 
29447  /* "ADR.pyx":980
29448  * self.u[0].dof,
29449  * self.coefficients.sdInfo[(0,0)][0],
29450  * self.coefficients.sdInfo[(0,0)][1], # <<<<<<<<<<<<<<
29451  * self.q[('a',0,0)],
29452  * self.q[('df',0,0)],
29453  */
29454  __pyx_tuple__61 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__61)) __PYX_ERR(0, 980, __pyx_L1_error)
29455  __Pyx_GOTREF(__pyx_tuple__61);
29456  __Pyx_GIVEREF(__pyx_tuple__61);
29457 
29458  /* "ADR.pyx":981
29459  * self.coefficients.sdInfo[(0,0)][0],
29460  * self.coefficients.sdInfo[(0,0)][1],
29461  * self.q[('a',0,0)], # <<<<<<<<<<<<<<
29462  * self.q[('df',0,0)],
29463  * self.q[('r',0)],
29464  */
29465  __pyx_tuple__62 = PyTuple_Pack(3, __pyx_n_s_a, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__62)) __PYX_ERR(0, 981, __pyx_L1_error)
29466  __Pyx_GOTREF(__pyx_tuple__62);
29467  __Pyx_GIVEREF(__pyx_tuple__62);
29468 
29469  /* "ADR.pyx":982
29470  * self.coefficients.sdInfo[(0,0)][1],
29471  * self.q[('a',0,0)],
29472  * self.q[('df',0,0)], # <<<<<<<<<<<<<<
29473  * self.q[('r',0)],
29474  * self.shockCapturing.lag,
29475  */
29476  __pyx_tuple__63 = PyTuple_Pack(3, __pyx_n_s_df, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__63)) __PYX_ERR(0, 982, __pyx_L1_error)
29477  __Pyx_GOTREF(__pyx_tuple__63);
29478  __Pyx_GIVEREF(__pyx_tuple__63);
29479 
29480  /* "ADR.pyx":983
29481  * self.q[('a',0,0)],
29482  * self.q[('df',0,0)],
29483  * self.q[('r',0)], # <<<<<<<<<<<<<<
29484  * self.shockCapturing.lag,
29485  * self.shockCapturing.shockCapturingFactor,
29486  */
29487  __pyx_tuple__64 = PyTuple_Pack(2, __pyx_n_s_r, __pyx_int_0); if (unlikely(!__pyx_tuple__64)) __PYX_ERR(0, 983, __pyx_L1_error)
29488  __Pyx_GOTREF(__pyx_tuple__64);
29489  __Pyx_GIVEREF(__pyx_tuple__64);
29490 
29491  /* "ADR.pyx":995
29492  * self.mesh.elementBoundaryElementsArray,
29493  * self.mesh.elementBoundaryLocalElementBoundariesArray,
29494  * self.ebqe[('a',0,0)], # <<<<<<<<<<<<<<
29495  * self.ebqe[('df',0,0)],
29496  * self.numericalFlux.isDOFBoundary[0],
29497  */
29498  __pyx_tuple__65 = PyTuple_Pack(3, __pyx_n_s_a, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__65)) __PYX_ERR(0, 995, __pyx_L1_error)
29499  __Pyx_GOTREF(__pyx_tuple__65);
29500  __Pyx_GIVEREF(__pyx_tuple__65);
29501 
29502  /* "ADR.pyx":996
29503  * self.mesh.elementBoundaryLocalElementBoundariesArray,
29504  * self.ebqe[('a',0,0)],
29505  * self.ebqe[('df',0,0)], # <<<<<<<<<<<<<<
29506  * self.numericalFlux.isDOFBoundary[0],
29507  * self.numericalFlux.ebqe[('u',0)],
29508  */
29509  __pyx_tuple__66 = PyTuple_Pack(3, __pyx_n_s_df, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__66)) __PYX_ERR(0, 996, __pyx_L1_error)
29510  __Pyx_GOTREF(__pyx_tuple__66);
29511  __Pyx_GIVEREF(__pyx_tuple__66);
29512 
29513  /* "ADR.pyx":998
29514  * self.ebqe[('df',0,0)],
29515  * self.numericalFlux.isDOFBoundary[0],
29516  * self.numericalFlux.ebqe[('u',0)], # <<<<<<<<<<<<<<
29517  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
29518  * self.ebqe[('advectiveFlux_bc_flag',0)],
29519  */
29520  __pyx_tuple__67 = PyTuple_Pack(2, __pyx_n_s_u, __pyx_int_0); if (unlikely(!__pyx_tuple__67)) __PYX_ERR(0, 998, __pyx_L1_error)
29521  __Pyx_GOTREF(__pyx_tuple__67);
29522  __Pyx_GIVEREF(__pyx_tuple__67);
29523 
29524  /* "ADR.pyx":999
29525  * self.numericalFlux.isDOFBoundary[0],
29526  * self.numericalFlux.ebqe[('u',0)],
29527  * self.ebqe[('diffusiveFlux_bc_flag',0,0)], # <<<<<<<<<<<<<<
29528  * self.ebqe[('advectiveFlux_bc_flag',0)],
29529  * self.ebqe[('diffusiveFlux_bc',0,0)],
29530  */
29531  __pyx_tuple__68 = PyTuple_Pack(3, __pyx_n_s_diffusiveFlux_bc_flag, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__68)) __PYX_ERR(0, 999, __pyx_L1_error)
29532  __Pyx_GOTREF(__pyx_tuple__68);
29533  __Pyx_GIVEREF(__pyx_tuple__68);
29534 
29535  /* "ADR.pyx":1000
29536  * self.numericalFlux.ebqe[('u',0)],
29537  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
29538  * self.ebqe[('advectiveFlux_bc_flag',0)], # <<<<<<<<<<<<<<
29539  * self.ebqe[('diffusiveFlux_bc',0,0)],
29540  * self.ebqe[('advectiveFlux_bc',0)],
29541  */
29542  __pyx_tuple__69 = PyTuple_Pack(2, __pyx_n_s_advectiveFlux_bc_flag, __pyx_int_0); if (unlikely(!__pyx_tuple__69)) __PYX_ERR(0, 1000, __pyx_L1_error)
29543  __Pyx_GOTREF(__pyx_tuple__69);
29544  __Pyx_GIVEREF(__pyx_tuple__69);
29545 
29546  /* "ADR.pyx":1001
29547  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
29548  * self.ebqe[('advectiveFlux_bc_flag',0)],
29549  * self.ebqe[('diffusiveFlux_bc',0,0)], # <<<<<<<<<<<<<<
29550  * self.ebqe[('advectiveFlux_bc',0)],
29551  * self.ebqe['penalty'],
29552  */
29553  __pyx_tuple__70 = PyTuple_Pack(3, __pyx_n_s_diffusiveFlux_bc, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__70)) __PYX_ERR(0, 1001, __pyx_L1_error)
29554  __Pyx_GOTREF(__pyx_tuple__70);
29555  __Pyx_GIVEREF(__pyx_tuple__70);
29556 
29557  /* "ADR.pyx":1002
29558  * self.ebqe[('advectiveFlux_bc_flag',0)],
29559  * self.ebqe[('diffusiveFlux_bc',0,0)],
29560  * self.ebqe[('advectiveFlux_bc',0)], # <<<<<<<<<<<<<<
29561  * self.ebqe['penalty'],
29562  * self.numericalFlux.boundaryAdjoint_sigma)
29563  */
29564  __pyx_tuple__71 = PyTuple_Pack(2, __pyx_n_s_advectiveFlux_bc, __pyx_int_0); if (unlikely(!__pyx_tuple__71)) __PYX_ERR(0, 1002, __pyx_L1_error)
29565  __Pyx_GOTREF(__pyx_tuple__71);
29566  __Pyx_GIVEREF(__pyx_tuple__71);
29567 
29568  /* "ADR.pyx":1005
29569  * self.ebqe['penalty'],
29570  * self.numericalFlux.boundaryAdjoint_sigma)
29571  * log("Global residual",level=9,data=r) # <<<<<<<<<<<<<<
29572  * self.coefficients.massConservationError = fabs(globalSum(sum(r.flat[:self.mesh.nElements_owned])))
29573  * log(" Mass Conservation Error",level=3,data=self.coefficients.massConservationError)
29574  */
29575  __pyx_tuple__72 = PyTuple_Pack(1, __pyx_kp_s_Global_residual); if (unlikely(!__pyx_tuple__72)) __PYX_ERR(0, 1005, __pyx_L1_error)
29576  __Pyx_GOTREF(__pyx_tuple__72);
29577  __Pyx_GIVEREF(__pyx_tuple__72);
29578 
29579  /* "ADR.pyx":1007
29580  * log("Global residual",level=9,data=r)
29581  * self.coefficients.massConservationError = fabs(globalSum(sum(r.flat[:self.mesh.nElements_owned])))
29582  * log(" Mass Conservation Error",level=3,data=self.coefficients.massConservationError) # <<<<<<<<<<<<<<
29583  * self.nonlinear_function_evaluations += 1
29584  * def getJacobian(self,jacobian):
29585  */
29586  __pyx_tuple__73 = PyTuple_Pack(1, __pyx_kp_s_Mass_Conservation_Error); if (unlikely(!__pyx_tuple__73)) __PYX_ERR(0, 1007, __pyx_L1_error)
29587  __Pyx_GOTREF(__pyx_tuple__73);
29588  __Pyx_GIVEREF(__pyx_tuple__73);
29589 
29590  /* "ADR.pyx":1019
29591  * self.mesh.nodeArray,
29592  * self.mesh.elementNodesArray,
29593  * self.elementQuadratureWeights[('u',0)], # <<<<<<<<<<<<<<
29594  * self.u[0].femSpace.psi,
29595  * self.u[0].femSpace.grad_psi,
29596  */
29597  __pyx_tuple__74 = PyTuple_Pack(2, __pyx_n_s_u, __pyx_int_0); if (unlikely(!__pyx_tuple__74)) __PYX_ERR(0, 1019, __pyx_L1_error)
29598  __Pyx_GOTREF(__pyx_tuple__74);
29599  __Pyx_GIVEREF(__pyx_tuple__74);
29600 
29601  /* "ADR.pyx":1025
29602  * self.u[0].femSpace.grad_psi,
29603  * self.mesh.elementDiametersArray,
29604  * self.q[('cfl',0)], # <<<<<<<<<<<<<<
29605  * self.shockCapturing.shockCapturingFactor,
29606  * self.coefficients.sc_uref,
29607  */
29608  __pyx_tuple__75 = PyTuple_Pack(2, __pyx_n_s_cfl, __pyx_int_0); if (unlikely(!__pyx_tuple__75)) __PYX_ERR(0, 1025, __pyx_L1_error)
29609  __Pyx_GOTREF(__pyx_tuple__75);
29610  __Pyx_GIVEREF(__pyx_tuple__75);
29611 
29612  /* "ADR.pyx":1033
29613  * self.u[0].femSpace.elementMaps.psi_trace,
29614  * self.u[0].femSpace.elementMaps.grad_psi_trace,
29615  * self.elementBoundaryQuadratureWeights[('u',0)], # <<<<<<<<<<<<<<
29616  * self.u[0].femSpace.psi_trace,
29617  * self.u[0].femSpace.grad_psi_trace,
29618  */
29619  __pyx_tuple__76 = PyTuple_Pack(2, __pyx_n_s_u, __pyx_int_0); if (unlikely(!__pyx_tuple__76)) __PYX_ERR(0, 1033, __pyx_L1_error)
29620  __Pyx_GOTREF(__pyx_tuple__76);
29621  __Pyx_GIVEREF(__pyx_tuple__76);
29622 
29623  /* "ADR.pyx":1043
29624  * self.u[0].femSpace.dofMap.l2g,
29625  * self.u[0].dof,
29626  * self.coefficients.sdInfo[(0,0)][0], # <<<<<<<<<<<<<<
29627  * self.coefficients.sdInfo[(0,0)][1],
29628  * self.q[('a',0,0)],
29629  */
29630  __pyx_tuple__77 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__77)) __PYX_ERR(0, 1043, __pyx_L1_error)
29631  __Pyx_GOTREF(__pyx_tuple__77);
29632  __Pyx_GIVEREF(__pyx_tuple__77);
29633 
29634  /* "ADR.pyx":1044
29635  * self.u[0].dof,
29636  * self.coefficients.sdInfo[(0,0)][0],
29637  * self.coefficients.sdInfo[(0,0)][1], # <<<<<<<<<<<<<<
29638  * self.q[('a',0,0)],
29639  * self.q[('df',0,0)],
29640  */
29641  __pyx_tuple__78 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__78)) __PYX_ERR(0, 1044, __pyx_L1_error)
29642  __Pyx_GOTREF(__pyx_tuple__78);
29643  __Pyx_GIVEREF(__pyx_tuple__78);
29644 
29645  /* "ADR.pyx":1045
29646  * self.coefficients.sdInfo[(0,0)][0],
29647  * self.coefficients.sdInfo[(0,0)][1],
29648  * self.q[('a',0,0)], # <<<<<<<<<<<<<<
29649  * self.q[('df',0,0)],
29650  * self.q[('r',0)],
29651  */
29652  __pyx_tuple__79 = PyTuple_Pack(3, __pyx_n_s_a, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__79)) __PYX_ERR(0, 1045, __pyx_L1_error)
29653  __Pyx_GOTREF(__pyx_tuple__79);
29654  __Pyx_GIVEREF(__pyx_tuple__79);
29655 
29656  /* "ADR.pyx":1046
29657  * self.coefficients.sdInfo[(0,0)][1],
29658  * self.q[('a',0,0)],
29659  * self.q[('df',0,0)], # <<<<<<<<<<<<<<
29660  * self.q[('r',0)],
29661  * self.shockCapturing.lag,
29662  */
29663  __pyx_tuple__80 = PyTuple_Pack(3, __pyx_n_s_df, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__80)) __PYX_ERR(0, 1046, __pyx_L1_error)
29664  __Pyx_GOTREF(__pyx_tuple__80);
29665  __Pyx_GIVEREF(__pyx_tuple__80);
29666 
29667  /* "ADR.pyx":1047
29668  * self.q[('a',0,0)],
29669  * self.q[('df',0,0)],
29670  * self.q[('r',0)], # <<<<<<<<<<<<<<
29671  * self.shockCapturing.lag,
29672  * self.shockCapturing.shockCapturingFactor,
29673  */
29674  __pyx_tuple__81 = PyTuple_Pack(2, __pyx_n_s_r, __pyx_int_0); if (unlikely(!__pyx_tuple__81)) __PYX_ERR(0, 1047, __pyx_L1_error)
29675  __Pyx_GOTREF(__pyx_tuple__81);
29676  __Pyx_GIVEREF(__pyx_tuple__81);
29677 
29678  /* "ADR.pyx":1052
29679  * self.shockCapturing.numDiff[0],
29680  * self.shockCapturing.numDiff_last[0],
29681  * self.csrRowIndeces[(0,0)], # <<<<<<<<<<<<<<
29682  * self.csrColumnOffsets[(0,0)],
29683  * jacobian,
29684  */
29685  __pyx_tuple__82 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__82)) __PYX_ERR(0, 1052, __pyx_L1_error)
29686  __Pyx_GOTREF(__pyx_tuple__82);
29687  __Pyx_GIVEREF(__pyx_tuple__82);
29688 
29689  /* "ADR.pyx":1053
29690  * self.shockCapturing.numDiff_last[0],
29691  * self.csrRowIndeces[(0,0)],
29692  * self.csrColumnOffsets[(0,0)], # <<<<<<<<<<<<<<
29693  * jacobian,
29694  * self.mesh.nExteriorElementBoundaries_global,
29695  */
29696  __pyx_tuple__83 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__83)) __PYX_ERR(0, 1053, __pyx_L1_error)
29697  __Pyx_GOTREF(__pyx_tuple__83);
29698  __Pyx_GIVEREF(__pyx_tuple__83);
29699 
29700  /* "ADR.pyx":1059
29701  * self.mesh.elementBoundaryElementsArray,
29702  * self.mesh.elementBoundaryLocalElementBoundariesArray,
29703  * self.ebqe[('a',0,0)], # <<<<<<<<<<<<<<
29704  * self.ebqe[('df',0,0)],
29705  * self.numericalFlux.isDOFBoundary[0],
29706  */
29707  __pyx_tuple__84 = PyTuple_Pack(3, __pyx_n_s_a, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__84)) __PYX_ERR(0, 1059, __pyx_L1_error)
29708  __Pyx_GOTREF(__pyx_tuple__84);
29709  __Pyx_GIVEREF(__pyx_tuple__84);
29710 
29711  /* "ADR.pyx":1060
29712  * self.mesh.elementBoundaryLocalElementBoundariesArray,
29713  * self.ebqe[('a',0,0)],
29714  * self.ebqe[('df',0,0)], # <<<<<<<<<<<<<<
29715  * self.numericalFlux.isDOFBoundary[0],
29716  * self.numericalFlux.ebqe[('u',0)],
29717  */
29718  __pyx_tuple__85 = PyTuple_Pack(3, __pyx_n_s_df, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__85)) __PYX_ERR(0, 1060, __pyx_L1_error)
29719  __Pyx_GOTREF(__pyx_tuple__85);
29720  __Pyx_GIVEREF(__pyx_tuple__85);
29721 
29722  /* "ADR.pyx":1062
29723  * self.ebqe[('df',0,0)],
29724  * self.numericalFlux.isDOFBoundary[0],
29725  * self.numericalFlux.ebqe[('u',0)], # <<<<<<<<<<<<<<
29726  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
29727  * self.ebqe[('advectiveFlux_bc_flag',0)],
29728  */
29729  __pyx_tuple__86 = PyTuple_Pack(2, __pyx_n_s_u, __pyx_int_0); if (unlikely(!__pyx_tuple__86)) __PYX_ERR(0, 1062, __pyx_L1_error)
29730  __Pyx_GOTREF(__pyx_tuple__86);
29731  __Pyx_GIVEREF(__pyx_tuple__86);
29732 
29733  /* "ADR.pyx":1063
29734  * self.numericalFlux.isDOFBoundary[0],
29735  * self.numericalFlux.ebqe[('u',0)],
29736  * self.ebqe[('diffusiveFlux_bc_flag',0,0)], # <<<<<<<<<<<<<<
29737  * self.ebqe[('advectiveFlux_bc_flag',0)],
29738  * self.ebqe[('diffusiveFlux_bc',0,0)],
29739  */
29740  __pyx_tuple__87 = PyTuple_Pack(3, __pyx_n_s_diffusiveFlux_bc_flag, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__87)) __PYX_ERR(0, 1063, __pyx_L1_error)
29741  __Pyx_GOTREF(__pyx_tuple__87);
29742  __Pyx_GIVEREF(__pyx_tuple__87);
29743 
29744  /* "ADR.pyx":1064
29745  * self.numericalFlux.ebqe[('u',0)],
29746  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
29747  * self.ebqe[('advectiveFlux_bc_flag',0)], # <<<<<<<<<<<<<<
29748  * self.ebqe[('diffusiveFlux_bc',0,0)],
29749  * self.ebqe[('advectiveFlux_bc',0)],
29750  */
29751  __pyx_tuple__88 = PyTuple_Pack(2, __pyx_n_s_advectiveFlux_bc_flag, __pyx_int_0); if (unlikely(!__pyx_tuple__88)) __PYX_ERR(0, 1064, __pyx_L1_error)
29752  __Pyx_GOTREF(__pyx_tuple__88);
29753  __Pyx_GIVEREF(__pyx_tuple__88);
29754 
29755  /* "ADR.pyx":1065
29756  * self.ebqe[('diffusiveFlux_bc_flag',0,0)],
29757  * self.ebqe[('advectiveFlux_bc_flag',0)],
29758  * self.ebqe[('diffusiveFlux_bc',0,0)], # <<<<<<<<<<<<<<
29759  * self.ebqe[('advectiveFlux_bc',0)],
29760  * self.csrColumnOffsets_eb[(0,0)],
29761  */
29762  __pyx_tuple__89 = PyTuple_Pack(3, __pyx_n_s_diffusiveFlux_bc, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__89)) __PYX_ERR(0, 1065, __pyx_L1_error)
29763  __Pyx_GOTREF(__pyx_tuple__89);
29764  __Pyx_GIVEREF(__pyx_tuple__89);
29765 
29766  /* "ADR.pyx":1066
29767  * self.ebqe[('advectiveFlux_bc_flag',0)],
29768  * self.ebqe[('diffusiveFlux_bc',0,0)],
29769  * self.ebqe[('advectiveFlux_bc',0)], # <<<<<<<<<<<<<<
29770  * self.csrColumnOffsets_eb[(0,0)],
29771  * self.ebqe['penalty'],
29772  */
29773  __pyx_tuple__90 = PyTuple_Pack(2, __pyx_n_s_advectiveFlux_bc, __pyx_int_0); if (unlikely(!__pyx_tuple__90)) __PYX_ERR(0, 1066, __pyx_L1_error)
29774  __Pyx_GOTREF(__pyx_tuple__90);
29775  __Pyx_GIVEREF(__pyx_tuple__90);
29776 
29777  /* "ADR.pyx":1067
29778  * self.ebqe[('diffusiveFlux_bc',0,0)],
29779  * self.ebqe[('advectiveFlux_bc',0)],
29780  * self.csrColumnOffsets_eb[(0,0)], # <<<<<<<<<<<<<<
29781  * self.ebqe['penalty'],
29782  * self.numericalFlux.boundaryAdjoint_sigma)
29783  */
29784  __pyx_tuple__91 = PyTuple_Pack(2, __pyx_int_0, __pyx_int_0); if (unlikely(!__pyx_tuple__91)) __PYX_ERR(0, 1067, __pyx_L1_error)
29785  __Pyx_GOTREF(__pyx_tuple__91);
29786  __Pyx_GIVEREF(__pyx_tuple__91);
29787 
29788  /* "ADR.pyx":1070
29789  * self.ebqe['penalty'],
29790  * self.numericalFlux.boundaryAdjoint_sigma)
29791  * log("Jacobian ",level=10,data=jacobian) # <<<<<<<<<<<<<<
29792  * #mwf decide if this is reasonable for solver statistics
29793  * self.nonlinear_function_jacobian_evaluations += 1
29794  */
29795  __pyx_tuple__92 = PyTuple_Pack(1, __pyx_kp_s_Jacobian); if (unlikely(!__pyx_tuple__92)) __PYX_ERR(0, 1070, __pyx_L1_error)
29796  __Pyx_GOTREF(__pyx_tuple__92);
29797  __Pyx_GIVEREF(__pyx_tuple__92);
29798 
29799  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":218
29800  * if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS)
29801  * and not PyArray_CHKFLAGS(self, NPY_C_CONTIGUOUS)):
29802  * raise ValueError(u"ndarray is not C contiguous") # <<<<<<<<<<<<<<
29803  *
29804  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
29805  */
29806  __pyx_tuple__93 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_C_contiguous); if (unlikely(!__pyx_tuple__93)) __PYX_ERR(1, 218, __pyx_L1_error)
29807  __Pyx_GOTREF(__pyx_tuple__93);
29808  __Pyx_GIVEREF(__pyx_tuple__93);
29809 
29810  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":222
29811  * if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
29812  * and not PyArray_CHKFLAGS(self, NPY_F_CONTIGUOUS)):
29813  * raise ValueError(u"ndarray is not Fortran contiguous") # <<<<<<<<<<<<<<
29814  *
29815  * info.buf = PyArray_DATA(self)
29816  */
29817  __pyx_tuple__94 = PyTuple_Pack(1, __pyx_kp_u_ndarray_is_not_Fortran_contiguou); if (unlikely(!__pyx_tuple__94)) __PYX_ERR(1, 222, __pyx_L1_error)
29818  __Pyx_GOTREF(__pyx_tuple__94);
29819  __Pyx_GIVEREF(__pyx_tuple__94);
29820 
29821  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":259
29822  * if ((descr.byteorder == c'>' and little_endian) or
29823  * (descr.byteorder == c'<' and not little_endian)):
29824  * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<<
29825  * if t == NPY_BYTE: f = "b"
29826  * elif t == NPY_UBYTE: f = "B"
29827  */
29828  __pyx_tuple__95 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__95)) __PYX_ERR(1, 259, __pyx_L1_error)
29829  __Pyx_GOTREF(__pyx_tuple__95);
29830  __Pyx_GIVEREF(__pyx_tuple__95);
29831 
29832  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":799
29833  *
29834  * if (end - f) - <int>(new_offset - offset[0]) < 15:
29835  * raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd") # <<<<<<<<<<<<<<
29836  *
29837  * if ((child.byteorder == c'>' and little_endian) or
29838  */
29839  __pyx_tuple__96 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor); if (unlikely(!__pyx_tuple__96)) __PYX_ERR(1, 799, __pyx_L1_error)
29840  __Pyx_GOTREF(__pyx_tuple__96);
29841  __Pyx_GIVEREF(__pyx_tuple__96);
29842 
29843  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":803
29844  * if ((child.byteorder == c'>' and little_endian) or
29845  * (child.byteorder == c'<' and not little_endian)):
29846  * raise ValueError(u"Non-native byte order not supported") # <<<<<<<<<<<<<<
29847  * # One could encode it in the format string and have Cython
29848  * # complain instead, BUT: < and > in format strings also imply
29849  */
29850  __pyx_tuple__97 = PyTuple_Pack(1, __pyx_kp_u_Non_native_byte_order_not_suppor); if (unlikely(!__pyx_tuple__97)) __PYX_ERR(1, 803, __pyx_L1_error)
29851  __Pyx_GOTREF(__pyx_tuple__97);
29852  __Pyx_GIVEREF(__pyx_tuple__97);
29853 
29854  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":823
29855  * t = child.type_num
29856  * if end - f < 5:
29857  * raise RuntimeError(u"Format string allocated too short.") # <<<<<<<<<<<<<<
29858  *
29859  * # Until ticket #99 is fixed, use integers to avoid warnings
29860  */
29861  __pyx_tuple__98 = PyTuple_Pack(1, __pyx_kp_u_Format_string_allocated_too_shor_2); if (unlikely(!__pyx_tuple__98)) __PYX_ERR(1, 823, __pyx_L1_error)
29862  __Pyx_GOTREF(__pyx_tuple__98);
29863  __Pyx_GIVEREF(__pyx_tuple__98);
29864 
29865  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":989
29866  * _import_array()
29867  * except Exception:
29868  * raise ImportError("numpy.core.multiarray failed to import") # <<<<<<<<<<<<<<
29869  *
29870  * cdef inline int import_umath() except -1:
29871  */
29872  __pyx_tuple__99 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_multiarray_failed_to); if (unlikely(!__pyx_tuple__99)) __PYX_ERR(1, 989, __pyx_L1_error)
29873  __Pyx_GOTREF(__pyx_tuple__99);
29874  __Pyx_GIVEREF(__pyx_tuple__99);
29875 
29876  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":995
29877  * _import_umath()
29878  * except Exception:
29879  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
29880  *
29881  * cdef inline int import_ufunc() except -1:
29882  */
29883  __pyx_tuple__100 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_umath_failed_to_impor); if (unlikely(!__pyx_tuple__100)) __PYX_ERR(1, 995, __pyx_L1_error)
29884  __Pyx_GOTREF(__pyx_tuple__100);
29885  __Pyx_GIVEREF(__pyx_tuple__100);
29886 
29887  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":1001
29888  * _import_umath()
29889  * except Exception:
29890  * raise ImportError("numpy.core.umath failed to import") # <<<<<<<<<<<<<<
29891  */
29892  __pyx_tuple__101 = PyTuple_Pack(1, __pyx_kp_s_numpy_core_umath_failed_to_impor); if (unlikely(!__pyx_tuple__101)) __PYX_ERR(1, 1001, __pyx_L1_error)
29893  __Pyx_GOTREF(__pyx_tuple__101);
29894  __Pyx_GIVEREF(__pyx_tuple__101);
29895 
29896  /* "ADR.pyx":394
29897  * """
29898  *
29899  * def __init__(self,coefficients,nd): # <<<<<<<<<<<<<<
29900  * SGE_base.__init__(self,coefficients,nd,lag=False)
29901  * def initializeElementQuadrature(self,mesh,t,cq):
29902  */
29903  __pyx_tuple__102 = PyTuple_Pack(3, __pyx_n_s_self, __pyx_n_s_coefficients, __pyx_n_s_nd); if (unlikely(!__pyx_tuple__102)) __PYX_ERR(0, 394, __pyx_L1_error)
29904  __Pyx_GOTREF(__pyx_tuple__102);
29905  __Pyx_GIVEREF(__pyx_tuple__102);
29906  __pyx_codeobj__103 = (PyObject*)__Pyx_PyCode_New(3, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__102, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_init, 394, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__103)) __PYX_ERR(0, 394, __pyx_L1_error)
29907 
29908  /* "ADR.pyx":396
29909  * def __init__(self,coefficients,nd):
29910  * SGE_base.__init__(self,coefficients,nd,lag=False)
29911  * def initializeElementQuadrature(self,mesh,t,cq): # <<<<<<<<<<<<<<
29912  * pass
29913  * def updateSubgridErrorHistory(self,initializationPhase=False):
29914  */
29915  __pyx_tuple__104 = PyTuple_Pack(4, __pyx_n_s_self, __pyx_n_s_mesh, __pyx_n_s_t, __pyx_n_s_cq); if (unlikely(!__pyx_tuple__104)) __PYX_ERR(0, 396, __pyx_L1_error)
29916  __Pyx_GOTREF(__pyx_tuple__104);
29917  __Pyx_GIVEREF(__pyx_tuple__104);
29918  __pyx_codeobj__105 = (PyObject*)__Pyx_PyCode_New(4, 0, 4, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__104, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_initializeElementQuadrature, 396, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__105)) __PYX_ERR(0, 396, __pyx_L1_error)
29919 
29920  /* "ADR.pyx":398
29921  * def initializeElementQuadrature(self,mesh,t,cq):
29922  * pass
29923  * def updateSubgridErrorHistory(self,initializationPhase=False): # <<<<<<<<<<<<<<
29924  * pass
29925  * def calculateSubgridError(self,q):
29926  */
29927  __pyx_tuple__106 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_initializationPhase); if (unlikely(!__pyx_tuple__106)) __PYX_ERR(0, 398, __pyx_L1_error)
29928  __Pyx_GOTREF(__pyx_tuple__106);
29929  __Pyx_GIVEREF(__pyx_tuple__106);
29930  __pyx_codeobj__107 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__106, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_updateSubgridErrorHistory, 398, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__107)) __PYX_ERR(0, 398, __pyx_L1_error)
29931  __pyx_tuple__108 = PyTuple_Pack(1, ((PyObject *)Py_False)); if (unlikely(!__pyx_tuple__108)) __PYX_ERR(0, 398, __pyx_L1_error)
29932  __Pyx_GOTREF(__pyx_tuple__108);
29933  __Pyx_GIVEREF(__pyx_tuple__108);
29934 
29935  /* "ADR.pyx":400
29936  * def updateSubgridErrorHistory(self,initializationPhase=False):
29937  * pass
29938  * def calculateSubgridError(self,q): # <<<<<<<<<<<<<<
29939  * pass
29940  *
29941  */
29942  __pyx_tuple__109 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_q); if (unlikely(!__pyx_tuple__109)) __PYX_ERR(0, 400, __pyx_L1_error)
29943  __Pyx_GOTREF(__pyx_tuple__109);
29944  __Pyx_GIVEREF(__pyx_tuple__109);
29945  __pyx_codeobj__110 = (PyObject*)__Pyx_PyCode_New(2, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__109, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_calculateSubgridError, 400, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__110)) __PYX_ERR(0, 400, __pyx_L1_error)
29946 
29947  /* "ADR.pyx":410
29948  * :parts: 2
29949  * """
29950  * def __init__(self,coefficients,nd,shockCapturingFactor=0.25,lag=True,nStepsToDelay=None): # <<<<<<<<<<<<<<
29951  * ShockCapturing_base.__init__(self,coefficients,nd,shockCapturingFactor,lag)
29952  * self.nStepsToDelay = nStepsToDelay
29953  */
29954  __pyx_tuple__111 = PyTuple_Pack(6, __pyx_n_s_self, __pyx_n_s_coefficients, __pyx_n_s_nd, __pyx_n_s_shockCapturingFactor, __pyx_n_s_lag, __pyx_n_s_nStepsToDelay); if (unlikely(!__pyx_tuple__111)) __PYX_ERR(0, 410, __pyx_L1_error)
29955  __Pyx_GOTREF(__pyx_tuple__111);
29956  __Pyx_GIVEREF(__pyx_tuple__111);
29957  __pyx_codeobj__112 = (PyObject*)__Pyx_PyCode_New(6, 0, 6, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__111, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_init, 410, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__112)) __PYX_ERR(0, 410, __pyx_L1_error)
29958  __pyx_tuple__113 = PyTuple_Pack(3, ((PyObject*)__pyx_float_0_25), ((PyObject *)Py_True), ((PyObject *)Py_None)); if (unlikely(!__pyx_tuple__113)) __PYX_ERR(0, 410, __pyx_L1_error)
29959  __Pyx_GOTREF(__pyx_tuple__113);
29960  __Pyx_GIVEREF(__pyx_tuple__113);
29961 
29962  /* "ADR.pyx":418
29963  * self.nStepsToDelay=1
29964  * self.lag=False
29965  * def initializeElementQuadrature(self,mesh,t,cq): # <<<<<<<<<<<<<<
29966  * self.mesh=mesh
29967  * self.numDiff=[]
29968  */
29969  __pyx_tuple__114 = PyTuple_Pack(5, __pyx_n_s_self, __pyx_n_s_mesh, __pyx_n_s_t, __pyx_n_s_cq, __pyx_n_s_ci); if (unlikely(!__pyx_tuple__114)) __PYX_ERR(0, 418, __pyx_L1_error)
29970  __Pyx_GOTREF(__pyx_tuple__114);
29971  __Pyx_GIVEREF(__pyx_tuple__114);
29972  __pyx_codeobj__115 = (PyObject*)__Pyx_PyCode_New(4, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__114, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_initializeElementQuadrature, 418, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__115)) __PYX_ERR(0, 418, __pyx_L1_error)
29973 
29974  /* "ADR.pyx":425
29975  * self.numDiff.append(cq[('numDiff',ci,ci)])
29976  * self.numDiff_last.append(cq[('numDiff',ci,ci)])
29977  * def updateShockCapturingHistory(self): # <<<<<<<<<<<<<<
29978  * self.nSteps += 1
29979  * if self.lag:
29980  */
29981  __pyx_tuple__116 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_ci); if (unlikely(!__pyx_tuple__116)) __PYX_ERR(0, 425, __pyx_L1_error)
29982  __Pyx_GOTREF(__pyx_tuple__116);
29983  __Pyx_GIVEREF(__pyx_tuple__116);
29984  __pyx_codeobj__117 = (PyObject*)__Pyx_PyCode_New(1, 0, 2, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__116, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_updateShockCapturingHistory, 425, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__117)) __PYX_ERR(0, 425, __pyx_L1_error)
29985 
29986  /* "ADR.pyx":439
29987  *
29988  * class NumericalFlux_IIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior):
29989  * def __init__(self,vt,getPointwiseBoundaryConditions, # <<<<<<<<<<<<<<
29990  * getAdvectiveFluxBoundaryConditions,
29991  * getDiffusiveFluxBoundaryConditions):
29992  */
29993  __pyx_tuple__118 = PyTuple_Pack(5, __pyx_n_s_self, __pyx_n_s_vt, __pyx_n_s_getPointwiseBoundaryConditions, __pyx_n_s_getAdvectiveFluxBoundaryConditio, __pyx_n_s_getDiffusiveFluxBoundaryConditio); if (unlikely(!__pyx_tuple__118)) __PYX_ERR(0, 439, __pyx_L1_error)
29994  __Pyx_GOTREF(__pyx_tuple__118);
29995  __Pyx_GIVEREF(__pyx_tuple__118);
29996  __pyx_codeobj__119 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__118, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_init, 439, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__119)) __PYX_ERR(0, 439, __pyx_L1_error)
29997 
29998  /* "ADR.pyx":447
29999  *
30000  * class NumericalFlux_SIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_SIPG_exterior):
30001  * def __init__(self,vt,getPointwiseBoundaryConditions, # <<<<<<<<<<<<<<
30002  * getAdvectiveFluxBoundaryConditions,
30003  * getDiffusiveFluxBoundaryConditions):
30004  */
30005  __pyx_tuple__120 = PyTuple_Pack(5, __pyx_n_s_self, __pyx_n_s_vt, __pyx_n_s_getPointwiseBoundaryConditions, __pyx_n_s_getAdvectiveFluxBoundaryConditio, __pyx_n_s_getDiffusiveFluxBoundaryConditio); if (unlikely(!__pyx_tuple__120)) __PYX_ERR(0, 447, __pyx_L1_error)
30006  __Pyx_GOTREF(__pyx_tuple__120);
30007  __Pyx_GIVEREF(__pyx_tuple__120);
30008  __pyx_codeobj__121 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__120, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_init, 447, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__121)) __PYX_ERR(0, 447, __pyx_L1_error)
30009 
30010  /* "ADR.pyx":455
30011  *
30012  * class NumericalFlux_NIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_NIPG_exterior):
30013  * def __init__(self,vt,getPointwiseBoundaryConditions, # <<<<<<<<<<<<<<
30014  * getAdvectiveFluxBoundaryConditions,
30015  * getDiffusiveFluxBoundaryConditions):
30016  */
30017  __pyx_tuple__122 = PyTuple_Pack(5, __pyx_n_s_self, __pyx_n_s_vt, __pyx_n_s_getPointwiseBoundaryConditions, __pyx_n_s_getAdvectiveFluxBoundaryConditio, __pyx_n_s_getDiffusiveFluxBoundaryConditio); if (unlikely(!__pyx_tuple__122)) __PYX_ERR(0, 455, __pyx_L1_error)
30018  __Pyx_GOTREF(__pyx_tuple__122);
30019  __Pyx_GIVEREF(__pyx_tuple__122);
30020  __pyx_codeobj__123 = (PyObject*)__Pyx_PyCode_New(5, 0, 5, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__122, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_init, 455, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__123)) __PYX_ERR(0, 455, __pyx_L1_error)
30021 
30022  /* "ADR.pyx":472
30023  * """
30024  * from proteus.ctransportCoefficients import L2projectEvaluate
30025  * def __init__(self,aOfX,fOfX,velocity=None,nc=1,nd=2,l2proj=None, # <<<<<<<<<<<<<<
30026  * timeVaryingCoefficients=False,
30027  * forceStrongDirichlet=False,
30028  */
30029  __pyx_tuple__124 = PyTuple_Pack(21, __pyx_n_s_self, __pyx_n_s_aOfX, __pyx_n_s_fOfX, __pyx_n_s_velocity, __pyx_n_s_nc, __pyx_n_s_nd, __pyx_n_s_l2proj, __pyx_n_s_timeVaryingCoefficients, __pyx_n_s_forceStrongDirichlet, __pyx_n_s_useMetrics, __pyx_n_s_sc_uref, __pyx_n_s_sc_beta, __pyx_n_s_mass, __pyx_n_s_advection, __pyx_n_s_diffusion, __pyx_n_s_potential, __pyx_n_s_reaction, __pyx_n_s_hamiltonian, __pyx_n_s_i, __pyx_n_s_sdInfo, __pyx_n_s_row); if (unlikely(!__pyx_tuple__124)) __PYX_ERR(0, 472, __pyx_L1_error)
30030  __Pyx_GOTREF(__pyx_tuple__124);
30031  __Pyx_GIVEREF(__pyx_tuple__124);
30032  __pyx_codeobj__125 = (PyObject*)__Pyx_PyCode_New(12, 0, 21, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__124, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_init, 472, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__125)) __PYX_ERR(0, 472, __pyx_L1_error)
30033  __pyx_tuple__126 = PyTuple_Pack(9, ((PyObject *)Py_None), ((PyObject *)__pyx_int_1), ((PyObject *)__pyx_int_2), ((PyObject *)Py_None), ((PyObject *)Py_False), ((PyObject *)Py_False), ((PyObject*)__pyx_float_0_0), ((PyObject*)__pyx_float_1_0), ((PyObject*)__pyx_float_1_0)); if (unlikely(!__pyx_tuple__126)) __PYX_ERR(0, 472, __pyx_L1_error)
30034  __Pyx_GOTREF(__pyx_tuple__126);
30035  __Pyx_GIVEREF(__pyx_tuple__126);
30036 
30037  /* "ADR.pyx":514
30038  * useSparseDiffusion=True,
30039  * movingDomain=False)
30040  * def initializeElementQuadrature(self,t,cq): # <<<<<<<<<<<<<<
30041  * nd = self.nd
30042  * for ci in range(self.nc):
30043  */
30044  __pyx_tuple__127 = PyTuple_Pack(6, __pyx_n_s_self, __pyx_n_s_t, __pyx_n_s_cq, __pyx_n_s_nd, __pyx_n_s_ci, __pyx_n_s_i); if (unlikely(!__pyx_tuple__127)) __PYX_ERR(0, 514, __pyx_L1_error)
30045  __Pyx_GOTREF(__pyx_tuple__127);
30046  __Pyx_GIVEREF(__pyx_tuple__127);
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30048 
30049  /* "ADR.pyx":525
30050  * cq[('r',ci)].flat[i] = -self.fOfX[ci](cq['x'].flat[3*i:3*(i+1)])
30051  * cq[('a',ci,ci)].flat[nd*nd*i:nd*nd*(i+1)] = self.aOfX[ci](cq['x'].flat[3*i:3*(i+1)]).flat
30052  * def initializeElementBoundaryQuadrature(self,t,cebq,cebq_global): # <<<<<<<<<<<<<<
30053  * nd = self.nd
30054  * for c in [cebq,cebq_global]:
30055  */
30056  __pyx_tuple__129 = PyTuple_Pack(8, __pyx_n_s_self, __pyx_n_s_t, __pyx_n_s_cebq, __pyx_n_s_cebq_global, __pyx_n_s_nd, __pyx_n_s_c, __pyx_n_s_ci, __pyx_n_s_i); if (unlikely(!__pyx_tuple__129)) __PYX_ERR(0, 525, __pyx_L1_error)
30057  __Pyx_GOTREF(__pyx_tuple__129);
30058  __Pyx_GIVEREF(__pyx_tuple__129);
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30060 
30061  /* "ADR.pyx":538
30062  * c[('r',ci)].flat[i] = -self.fOfX[ci](c['x'].flat[3*i:3*(i+1)])
30063  * c[('a',ci,ci)].flat[nd*nd*i:nd*nd*(i+1)] = self.aOfX[ci](c['x'].flat[3*i:3*(i+1)]).flat
30064  * def initializeGlobalExteriorElementBoundaryQuadrature(self,t,cebqe): # <<<<<<<<<<<<<<
30065  * nd = self.nd
30066  * for c in [cebqe]:
30067  */
30068  __pyx_tuple__131 = PyTuple_Pack(7, __pyx_n_s_self, __pyx_n_s_t, __pyx_n_s_cebqe, __pyx_n_s_nd, __pyx_n_s_c, __pyx_n_s_ci, __pyx_n_s_i); if (unlikely(!__pyx_tuple__131)) __PYX_ERR(0, 538, __pyx_L1_error)
30069  __Pyx_GOTREF(__pyx_tuple__131);
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30072 
30073  /* "ADR.pyx":551
30074  * c[('r',ci)].flat[i] = -self.fOfX[ci](c['x'].flat[3*i:3*(i+1)])
30075  * c[('a',ci,ci)].flat[nd*nd*i:nd*nd*(i+1)] = self.aOfX[ci](c['x'].flat[3*i:3*(i+1)]).flat
30076  * def evaluate(self,t,c): # <<<<<<<<<<<<<<
30077  * if self.timeVaryingCoefficients:
30078  * nd = self.nd
30079  */
30080  __pyx_tuple__133 = PyTuple_Pack(6, __pyx_n_s_self, __pyx_n_s_t, __pyx_n_s_c, __pyx_n_s_nd, __pyx_n_s_ci, __pyx_n_s_i); if (unlikely(!__pyx_tuple__133)) __PYX_ERR(0, 551, __pyx_L1_error)
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30084 
30085  /* "ADR.pyx":571
30086  * """
30087  * nCalls=0
30088  * def __init__(self, # <<<<<<<<<<<<<<
30089  * uDict,
30090  * phiDict,
30091  */
30092  __pyx_tuple__135 = PyTuple_Pack(56, __pyx_n_s_self, __pyx_n_s_uDict, __pyx_n_s_phiDict, __pyx_n_s_testSpaceDict, __pyx_n_s_matType, __pyx_n_s_dofBoundaryConditionsDict, __pyx_n_s_dofBoundaryConditionsSetterDict, __pyx_n_s_coefficients, __pyx_n_s_elementQuadrature, __pyx_n_s_elementBoundaryQuadrature, __pyx_n_s_fluxBoundaryConditionsDict, __pyx_n_s_advectiveFluxBoundaryConditionsS, __pyx_n_s_diffusiveFluxBoundaryConditionsS, __pyx_n_s_stressTraceBoundaryConditionsSet, __pyx_n_s_stabilization, __pyx_n_s_shockCapturing, __pyx_n_s_conservativeFluxDict, __pyx_n_s_numericalFluxType, __pyx_n_s_TimeIntegrationClass, __pyx_n_s_massLumping, __pyx_n_s_reactionLumping, __pyx_n_s_options, __pyx_n_s_name, __pyx_n_s_reuse_trial_and_test_quadrature, __pyx_n_s_sd, __pyx_n_s_movingDomain, __pyx_n_s_Comm, __pyx_n_s_ci, __pyx_n_s_flag, __pyx_n_s_diffusionDict, __pyx_n_s_elementQuadratureDict, __pyx_n_s_elemQuadIsDict, __pyx_n_s_I, __pyx_n_s_elementBoundaryQuadratureDict, __pyx_n_s_cj, __pyx_n_s_ebNE, __pyx_n_s_ebN, __pyx_n_s_eN_global, __pyx_n_s_ebN_element, __pyx_n_s_i, __pyx_n_s_nI, __pyx_n_s_n, __pyx_n_s_comm, __pyx_n_s_k, __pyx_n_s_PostProcessingTools, __pyx_n_s_Archiver, __pyx_n_s_fbcObject, __pyx_n_s_t, __pyx_n_s_g, __pyx_n_s_ck, __pyx_n_s_diffusiveFluxBoundaryConditionsD_2, __pyx_n_s_compKernelFlag, __pyx_n_s_u_j, __pyx_n_s_phi_k, __pyx_n_s_femSpace, __pyx_n_s_dc); if (unlikely(!__pyx_tuple__135)) __PYX_ERR(0, 571, __pyx_L1_error)
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30098  __Pyx_GIVEREF(__pyx_tuple__137);
30099 
30100  /* "ADR.pyx":934
30101  * compKernelFlag)
30102  * #mwf these are getting called by redistancing classes,
30103  * def calculateCoefficients(self): # <<<<<<<<<<<<<<
30104  * pass
30105  * def getResidual(self,u,r):
30106  */
30107  __pyx_tuple__138 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__138)) __PYX_ERR(0, 934, __pyx_L1_error)
30108  __Pyx_GOTREF(__pyx_tuple__138);
30109  __Pyx_GIVEREF(__pyx_tuple__138);
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30111 
30112  /* "ADR.pyx":936
30113  * def calculateCoefficients(self):
30114  * pass
30115  * def getResidual(self,u,r): # <<<<<<<<<<<<<<
30116  * import pdb
30117  * import copy
30118  */
30119  __pyx_tuple__140 = PyTuple_Pack(6, __pyx_n_s_self, __pyx_n_s_u, __pyx_n_s_r, __pyx_n_s_pdb, __pyx_n_s_copy, __pyx_n_s_globalSum); if (unlikely(!__pyx_tuple__140)) __PYX_ERR(0, 936, __pyx_L1_error)
30120  __Pyx_GOTREF(__pyx_tuple__140);
30121  __Pyx_GIVEREF(__pyx_tuple__140);
30122  __pyx_codeobj__141 = (PyObject*)__Pyx_PyCode_New(3, 0, 6, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__140, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_getResidual, 936, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__141)) __PYX_ERR(0, 936, __pyx_L1_error)
30123 
30124  /* "ADR.pyx":1009
30125  * log(" Mass Conservation Error",level=3,data=self.coefficients.massConservationError)
30126  * self.nonlinear_function_evaluations += 1
30127  * def getJacobian(self,jacobian): # <<<<<<<<<<<<<<
30128  * #import superluWrappers
30129  * #import numpy
30130  */
30131  __pyx_tuple__142 = PyTuple_Pack(3, __pyx_n_s_self, __pyx_n_s_jacobian, __pyx_n_s_pdb); if (unlikely(!__pyx_tuple__142)) __PYX_ERR(0, 1009, __pyx_L1_error)
30132  __Pyx_GOTREF(__pyx_tuple__142);
30133  __Pyx_GIVEREF(__pyx_tuple__142);
30134  __pyx_codeobj__143 = (PyObject*)__Pyx_PyCode_New(2, 0, 3, 0, 0, __pyx_empty_bytes, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_tuple__142, __pyx_empty_tuple, __pyx_empty_tuple, __pyx_kp_s_home_cekees_proteus_proteus_ADR, __pyx_n_s_getJacobian, 1009, __pyx_empty_bytes); if (unlikely(!__pyx_codeobj__143)) __PYX_ERR(0, 1009, __pyx_L1_error)
30135 
30136  /* "ADR.pyx":1074
30137  * self.nonlinear_function_jacobian_evaluations += 1
30138  * return jacobian
30139  * def calculateElementQuadrature(self): # <<<<<<<<<<<<<<
30140  * """
30141  * Calculate the physical location and weights of the quadrature rules
30142  */
30143  __pyx_tuple__144 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__144)) __PYX_ERR(0, 1074, __pyx_L1_error)
30144  __Pyx_GOTREF(__pyx_tuple__144);
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30147 
30148  /* "ADR.pyx":1093
30149  * if self.shockCapturing is not None:
30150  * self.shockCapturing.initializeElementQuadrature(self.mesh,self.timeIntegration.t,self.q)
30151  * def calculateElementBoundaryQuadrature(self): # <<<<<<<<<<<<<<
30152  * pass
30153  * def calculateExteriorElementBoundaryQuadrature(self):
30154  */
30155  __pyx_tuple__146 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__146)) __PYX_ERR(0, 1093, __pyx_L1_error)
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30159 
30160  /* "ADR.pyx":1095
30161  * def calculateElementBoundaryQuadrature(self):
30162  * pass
30163  * def calculateExteriorElementBoundaryQuadrature(self): # <<<<<<<<<<<<<<
30164  * self.u[0].femSpace.elementMaps.getBasisValuesTraceRef(self.elementBoundaryQuadraturePoints)
30165  * self.u[0].femSpace.elementMaps.getBasisGradientValuesTraceRef(self.elementBoundaryQuadraturePoints)
30166  */
30167  __pyx_tuple__148 = PyTuple_Pack(2, __pyx_n_s_self, __pyx_n_s_cj); if (unlikely(!__pyx_tuple__148)) __PYX_ERR(0, 1095, __pyx_L1_error)
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30171 
30172  /* "ADR.pyx":1109
30173  * for cj in self.advectiveFluxBoundaryConditionsSetterDict.keys()])
30174  * self.coefficients.initializeGlobalExteriorElementBoundaryQuadrature(self.timeIntegration.t,self.ebqe)
30175  * def estimate_mt(self): # <<<<<<<<<<<<<<
30176  * pass
30177  * def calculateAuxiliaryQuantitiesAfterStep(self):
30178  */
30179  __pyx_tuple__150 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__150)) __PYX_ERR(0, 1109, __pyx_L1_error)
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30183 
30184  /* "ADR.pyx":1111
30185  * def estimate_mt(self):
30186  * pass
30187  * def calculateAuxiliaryQuantitiesAfterStep(self): # <<<<<<<<<<<<<<
30188  * pass
30189  * def calculateSolutionAtQuadrature(self):
30190  */
30191  __pyx_tuple__152 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__152)) __PYX_ERR(0, 1111, __pyx_L1_error)
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30195 
30196  /* "ADR.pyx":1113
30197  * def calculateAuxiliaryQuantitiesAfterStep(self):
30198  * pass
30199  * def calculateSolutionAtQuadrature(self): # <<<<<<<<<<<<<<
30200  * pass
30201  */
30202  __pyx_tuple__154 = PyTuple_Pack(1, __pyx_n_s_self); if (unlikely(!__pyx_tuple__154)) __PYX_ERR(0, 1113, __pyx_L1_error)
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30213 static int __Pyx_InitGlobals(void) {
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30215  __pyx_float_0_0 = PyFloat_FromDouble(0.0); if (unlikely(!__pyx_float_0_0)) __PYX_ERR(0, 1, __pyx_L1_error)
30216  __pyx_float_1_0 = PyFloat_FromDouble(1.0); if (unlikely(!__pyx_float_1_0)) __PYX_ERR(0, 1, __pyx_L1_error)
30217  __pyx_float_0_25 = PyFloat_FromDouble(0.25); if (unlikely(!__pyx_float_0_25)) __PYX_ERR(0, 1, __pyx_L1_error)
30218  __pyx_int_0 = PyInt_FromLong(0); if (unlikely(!__pyx_int_0)) __PYX_ERR(0, 1, __pyx_L1_error)
30219  __pyx_int_1 = PyInt_FromLong(1); if (unlikely(!__pyx_int_1)) __PYX_ERR(0, 1, __pyx_L1_error)
30220  __pyx_int_2 = PyInt_FromLong(2); if (unlikely(!__pyx_int_2)) __PYX_ERR(0, 1, __pyx_L1_error)
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30222  __pyx_int_4 = PyInt_FromLong(4); if (unlikely(!__pyx_int_4)) __PYX_ERR(0, 1, __pyx_L1_error)
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30232 #if PY_MAJOR_VERSION < 3
30233 PyMODINIT_FUNC initADR(void); /*proto*/
30234 PyMODINIT_FUNC initADR(void)
30235 #else
30236 PyMODINIT_FUNC PyInit_ADR(void); /*proto*/
30237 PyMODINIT_FUNC PyInit_ADR(void)
30238 #endif
30239 {
30240  PyObject *__pyx_t_1 = NULL;
30241  PyObject *__pyx_t_2 = NULL;
30242  PyObject *__pyx_t_3 = NULL;
30243  PyObject *__pyx_t_4 = NULL;
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30270  if (__pyx_Generator_init() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
30271  #endif
30272  #ifdef __Pyx_StopAsyncIteration_USED
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30274  #endif
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30276  /*--- Threads initialization code ---*/
30277  #if defined(__PYX_FORCE_INIT_THREADS) && __PYX_FORCE_INIT_THREADS
30278  #ifdef WITH_THREAD /* Python build with threading support? */
30279  PyEval_InitThreads();
30280  #endif
30281  #endif
30282  /*--- Module creation code ---*/
30283  #if PY_MAJOR_VERSION < 3
30284  __pyx_m = Py_InitModule4("ADR", __pyx_methods, __pyx_k_An_optimized_Advection_Diffusio, 0, PYTHON_API_VERSION); Py_XINCREF(__pyx_m);
30285  #else
30286  __pyx_m = PyModule_Create(&__pyx_moduledef);
30287  #endif
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30289  __pyx_d = PyModule_GetDict(__pyx_m); if (unlikely(!__pyx_d)) __PYX_ERR(0, 1, __pyx_L1_error)
30290  Py_INCREF(__pyx_d);
30291  __pyx_b = PyImport_AddModule(__Pyx_BUILTIN_MODULE_NAME); if (unlikely(!__pyx_b)) __PYX_ERR(0, 1, __pyx_L1_error)
30292  #if CYTHON_COMPILING_IN_PYPY
30293  Py_INCREF(__pyx_b);
30294  #endif
30295  if (PyObject_SetAttrString(__pyx_m, "__builtins__", __pyx_b) < 0) __PYX_ERR(0, 1, __pyx_L1_error);
30296  /*--- Initialize various global constants etc. ---*/
30297  if (__Pyx_InitGlobals() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
30298  #if PY_MAJOR_VERSION < 3 && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
30299  if (__Pyx_init_sys_getdefaultencoding_params() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
30300  #endif
30301  if (__pyx_module_is_main_ADR) {
30302  if (PyObject_SetAttrString(__pyx_m, "__name__", __pyx_n_s_main) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
30303  }
30304  #if PY_MAJOR_VERSION >= 3
30305  {
30306  PyObject *modules = PyImport_GetModuleDict(); if (unlikely(!modules)) __PYX_ERR(0, 1, __pyx_L1_error)
30307  if (!PyDict_GetItemString(modules, "ADR")) {
30308  if (unlikely(PyDict_SetItemString(modules, "ADR", __pyx_m) < 0)) __PYX_ERR(0, 1, __pyx_L1_error)
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30310  }
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30314  /*--- Constants init code ---*/
30315  if (__Pyx_InitCachedConstants() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
30316  /*--- Global init code ---*/
30317  /*--- Variable export code ---*/
30318  /*--- Function export code ---*/
30319  /*--- Type init code ---*/
30320  if (PyType_Ready(&__pyx_type_3ADR_ADR) < 0) __PYX_ERR(0, 140, __pyx_L1_error)
30321  __pyx_type_3ADR_ADR.tp_print = 0;
30322  if (PyObject_SetAttrString(__pyx_m, "ADR", (PyObject *)&__pyx_type_3ADR_ADR) < 0) __PYX_ERR(0, 140, __pyx_L1_error)
30323  __pyx_ptype_3ADR_ADR = &__pyx_type_3ADR_ADR;
30324  /*--- Type import code ---*/
30325  __pyx_ptype_7cpython_4type_type = __Pyx_ImportType(__Pyx_BUILTIN_MODULE_NAME, "type",
30326  #if CYTHON_COMPILING_IN_PYPY
30327  sizeof(PyTypeObject),
30328  #else
30329  sizeof(PyHeapTypeObject),
30330  #endif
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30338  /*--- Function import code ---*/
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30341  if (__Pyx_patch_abc() < 0) __PYX_ERR(0, 1, __pyx_L1_error)
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30344  /* "ADR.pyx":6
30345  * """
30346  *
30347  * import numpy # <<<<<<<<<<<<<<
30348  * cimport numpy
30349  * from math import fabs
30350  */
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30354  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30355 
30356  /* "ADR.pyx":8
30357  * import numpy
30358  * cimport numpy
30359  * from math import fabs # <<<<<<<<<<<<<<
30360  * import proteus
30361  * from proteus import cfemIntegrals, Quadrature
30362  */
30363  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 8, __pyx_L1_error)
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30367  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_fabs);
30368  __pyx_t_2 = __Pyx_Import(__pyx_n_s_math, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 8, __pyx_L1_error)
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30375  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
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30377  /* "ADR.pyx":9
30378  * cimport numpy
30379  * from math import fabs
30380  * import proteus # <<<<<<<<<<<<<<
30381  * from proteus import cfemIntegrals, Quadrature
30382  * from proteus.NonlinearSolvers import NonlinearEquation
30383  */
30384  __pyx_t_2 = __Pyx_Import(__pyx_n_s_proteus, 0, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 9, __pyx_L1_error)
30385  __Pyx_GOTREF(__pyx_t_2);
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30387  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30388 
30389  /* "ADR.pyx":10
30390  * from math import fabs
30391  * import proteus
30392  * from proteus import cfemIntegrals, Quadrature # <<<<<<<<<<<<<<
30393  * from proteus.NonlinearSolvers import NonlinearEquation
30394  * from proteus.FemTools import (DOFBoundaryConditions,
30395  */
30396  __pyx_t_2 = PyList_New(2); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 10, __pyx_L1_error)
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30405  __Pyx_GOTREF(__pyx_t_1);
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30407  __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_1, __pyx_n_s_cfemIntegrals); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 10, __pyx_L1_error)
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30417  /* "ADR.pyx":11
30418  * import proteus
30419  * from proteus import cfemIntegrals, Quadrature
30420  * from proteus.NonlinearSolvers import NonlinearEquation # <<<<<<<<<<<<<<
30421  * from proteus.FemTools import (DOFBoundaryConditions,
30422  * FluxBoundaryConditions,
30423  */
30424  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 11, __pyx_L1_error)
30425  __Pyx_GOTREF(__pyx_t_1);
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30427  __Pyx_GIVEREF(__pyx_n_s_NonlinearEquation);
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30436  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30437 
30438  /* "ADR.pyx":12
30439  * from proteus import cfemIntegrals, Quadrature
30440  * from proteus.NonlinearSolvers import NonlinearEquation
30441  * from proteus.FemTools import (DOFBoundaryConditions, # <<<<<<<<<<<<<<
30442  * FluxBoundaryConditions,
30443  * C0_AffineLinearOnSimplexWithNodalBasis)
30444  */
30445  __pyx_t_2 = PyList_New(3); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 12, __pyx_L1_error)
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30449  PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_DOFBoundaryConditions);
30450  __Pyx_INCREF(__pyx_n_s_FluxBoundaryConditions);
30451  __Pyx_GIVEREF(__pyx_n_s_FluxBoundaryConditions);
30452  PyList_SET_ITEM(__pyx_t_2, 1, __pyx_n_s_FluxBoundaryConditions);
30453  __Pyx_INCREF(__pyx_n_s_C0_AffineLinearOnSimplexWithNoda);
30454  __Pyx_GIVEREF(__pyx_n_s_C0_AffineLinearOnSimplexWithNoda);
30455  PyList_SET_ITEM(__pyx_t_2, 2, __pyx_n_s_C0_AffineLinearOnSimplexWithNoda);
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30468  __Pyx_GOTREF(__pyx_t_2);
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30471  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30472 
30473  /* "ADR.pyx":15
30474  * FluxBoundaryConditions,
30475  * C0_AffineLinearOnSimplexWithNodalBasis)
30476  * from proteus.flcbdfWrappers import globalMax # <<<<<<<<<<<<<<
30477  * from proteus.Profiling import memory
30478  * from proteus.Profiling import logEvent as log
30479  */
30480  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
30481  __Pyx_GOTREF(__pyx_t_1);
30482  __Pyx_INCREF(__pyx_n_s_globalMax);
30483  __Pyx_GIVEREF(__pyx_n_s_globalMax);
30484  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_globalMax);
30485  __pyx_t_2 = __Pyx_Import(__pyx_n_s_proteus_flcbdfWrappers, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 15, __pyx_L1_error)
30486  __Pyx_GOTREF(__pyx_t_2);
30487  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30488  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_globalMax); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 15, __pyx_L1_error)
30489  __Pyx_GOTREF(__pyx_t_1);
30490  if (PyDict_SetItem(__pyx_d, __pyx_n_s_globalMax, __pyx_t_1) < 0) __PYX_ERR(0, 15, __pyx_L1_error)
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30492  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30493 
30494  /* "ADR.pyx":16
30495  * C0_AffineLinearOnSimplexWithNodalBasis)
30496  * from proteus.flcbdfWrappers import globalMax
30497  * from proteus.Profiling import memory # <<<<<<<<<<<<<<
30498  * from proteus.Profiling import logEvent as log
30499  * from proteus.Transport import OneLevelTransport
30500  */
30501  __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 16, __pyx_L1_error)
30502  __Pyx_GOTREF(__pyx_t_2);
30503  __Pyx_INCREF(__pyx_n_s_memory);
30504  __Pyx_GIVEREF(__pyx_n_s_memory);
30505  PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_memory);
30506  __pyx_t_1 = __Pyx_Import(__pyx_n_s_proteus_Profiling, __pyx_t_2, -1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 16, __pyx_L1_error)
30507  __Pyx_GOTREF(__pyx_t_1);
30508  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30509  __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_1, __pyx_n_s_memory); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 16, __pyx_L1_error)
30510  __Pyx_GOTREF(__pyx_t_2);
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30513  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30514 
30515  /* "ADR.pyx":17
30516  * from proteus.flcbdfWrappers import globalMax
30517  * from proteus.Profiling import memory
30518  * from proteus.Profiling import logEvent as log # <<<<<<<<<<<<<<
30519  * from proteus.Transport import OneLevelTransport
30520  * from proteus.TransportCoefficients import TC_base
30521  */
30522  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 17, __pyx_L1_error)
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30525  __Pyx_GIVEREF(__pyx_n_s_logEvent);
30526  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_logEvent);
30527  __pyx_t_2 = __Pyx_Import(__pyx_n_s_proteus_Profiling, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 17, __pyx_L1_error)
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30534  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30535 
30536  /* "ADR.pyx":18
30537  * from proteus.Profiling import memory
30538  * from proteus.Profiling import logEvent as log
30539  * from proteus.Transport import OneLevelTransport # <<<<<<<<<<<<<<
30540  * from proteus.TransportCoefficients import TC_base
30541  * from proteus.SubgridError import SGE_base
30542  */
30543  __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 18, __pyx_L1_error)
30544  __Pyx_GOTREF(__pyx_t_2);
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30555  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30556 
30557  /* "ADR.pyx":19
30558  * from proteus.Profiling import logEvent as log
30559  * from proteus.Transport import OneLevelTransport
30560  * from proteus.TransportCoefficients import TC_base # <<<<<<<<<<<<<<
30561  * from proteus.SubgridError import SGE_base
30562  * from proteus.ShockCapturing import ShockCapturing_base
30563  */
30564  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 19, __pyx_L1_error)
30565  __Pyx_GOTREF(__pyx_t_1);
30566  __Pyx_INCREF(__pyx_n_s_TC_base);
30567  __Pyx_GIVEREF(__pyx_n_s_TC_base);
30568  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_TC_base);
30569  __pyx_t_2 = __Pyx_Import(__pyx_n_s_proteus_TransportCoefficients, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 19, __pyx_L1_error)
30570  __Pyx_GOTREF(__pyx_t_2);
30571  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30572  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_TC_base); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 19, __pyx_L1_error)
30573  __Pyx_GOTREF(__pyx_t_1);
30574  if (PyDict_SetItem(__pyx_d, __pyx_n_s_TC_base, __pyx_t_1) < 0) __PYX_ERR(0, 19, __pyx_L1_error)
30575  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30576  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30577 
30578  /* "ADR.pyx":20
30579  * from proteus.Transport import OneLevelTransport
30580  * from proteus.TransportCoefficients import TC_base
30581  * from proteus.SubgridError import SGE_base # <<<<<<<<<<<<<<
30582  * from proteus.ShockCapturing import ShockCapturing_base
30583  *
30584  */
30585  __pyx_t_2 = PyList_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 20, __pyx_L1_error)
30586  __Pyx_GOTREF(__pyx_t_2);
30587  __Pyx_INCREF(__pyx_n_s_SGE_base);
30588  __Pyx_GIVEREF(__pyx_n_s_SGE_base);
30589  PyList_SET_ITEM(__pyx_t_2, 0, __pyx_n_s_SGE_base);
30590  __pyx_t_1 = __Pyx_Import(__pyx_n_s_proteus_SubgridError, __pyx_t_2, -1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 20, __pyx_L1_error)
30591  __Pyx_GOTREF(__pyx_t_1);
30592  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30593  __pyx_t_2 = __Pyx_ImportFrom(__pyx_t_1, __pyx_n_s_SGE_base); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 20, __pyx_L1_error)
30594  __Pyx_GOTREF(__pyx_t_2);
30595  if (PyDict_SetItem(__pyx_d, __pyx_n_s_SGE_base, __pyx_t_2) < 0) __PYX_ERR(0, 20, __pyx_L1_error)
30596  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30597  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30598 
30599  /* "ADR.pyx":21
30600  * from proteus.TransportCoefficients import TC_base
30601  * from proteus.SubgridError import SGE_base
30602  * from proteus.ShockCapturing import ShockCapturing_base # <<<<<<<<<<<<<<
30603  *
30604  * cdef extern from "ADR.h" namespace "proteus":
30605  */
30606  __pyx_t_1 = PyList_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 21, __pyx_L1_error)
30607  __Pyx_GOTREF(__pyx_t_1);
30608  __Pyx_INCREF(__pyx_n_s_ShockCapturing_base);
30609  __Pyx_GIVEREF(__pyx_n_s_ShockCapturing_base);
30610  PyList_SET_ITEM(__pyx_t_1, 0, __pyx_n_s_ShockCapturing_base);
30611  __pyx_t_2 = __Pyx_Import(__pyx_n_s_proteus_ShockCapturing, __pyx_t_1, -1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 21, __pyx_L1_error)
30612  __Pyx_GOTREF(__pyx_t_2);
30613  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30614  __pyx_t_1 = __Pyx_ImportFrom(__pyx_t_2, __pyx_n_s_ShockCapturing_base); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 21, __pyx_L1_error)
30615  __Pyx_GOTREF(__pyx_t_1);
30616  if (PyDict_SetItem(__pyx_d, __pyx_n_s_ShockCapturing_base, __pyx_t_1) < 0) __PYX_ERR(0, 21, __pyx_L1_error)
30617  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30618  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30619 
30620  /* "ADR.pyx":386
30621  *
30622  *
30623  * class SubgridError(SGE_base): # <<<<<<<<<<<<<<
30624  * """
30625  * SubgridError approximation for ADR equations
30626  */
30627  __pyx_t_2 = __Pyx_GetModuleGlobalName(__pyx_n_s_SGE_base); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 386, __pyx_L1_error)
30628  __Pyx_GOTREF(__pyx_t_2);
30629  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 386, __pyx_L1_error)
30630  __Pyx_GOTREF(__pyx_t_1);
30631  __Pyx_GIVEREF(__pyx_t_2);
30632  PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_2);
30633  __pyx_t_2 = 0;
30634  __pyx_t_2 = __Pyx_CalculateMetaclass(NULL, __pyx_t_1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 386, __pyx_L1_error)
30635  __Pyx_GOTREF(__pyx_t_2);
30636  __pyx_t_3 = __Pyx_Py3MetaclassPrepare(__pyx_t_2, __pyx_t_1, __pyx_n_s_SubgridError, __pyx_n_s_SubgridError, (PyObject *) NULL, __pyx_n_s_ADR, __pyx_kp_s_SubgridError_approximation_for); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 386, __pyx_L1_error)
30637  __Pyx_GOTREF(__pyx_t_3);
30638 
30639  /* "ADR.pyx":394
30640  * """
30641  *
30642  * def __init__(self,coefficients,nd): # <<<<<<<<<<<<<<
30643  * SGE_base.__init__(self,coefficients,nd,lag=False)
30644  * def initializeElementQuadrature(self,mesh,t,cq):
30645  */
30646  __pyx_t_4 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_12SubgridError_1__init__, 0, __pyx_n_s_SubgridError___init, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__103)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 394, __pyx_L1_error)
30647  __Pyx_GOTREF(__pyx_t_4);
30648  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_init, __pyx_t_4) < 0) __PYX_ERR(0, 394, __pyx_L1_error)
30649  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30650 
30651  /* "ADR.pyx":396
30652  * def __init__(self,coefficients,nd):
30653  * SGE_base.__init__(self,coefficients,nd,lag=False)
30654  * def initializeElementQuadrature(self,mesh,t,cq): # <<<<<<<<<<<<<<
30655  * pass
30656  * def updateSubgridErrorHistory(self,initializationPhase=False):
30657  */
30658  __pyx_t_4 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_12SubgridError_3initializeElementQuadrature, 0, __pyx_n_s_SubgridError_initializeElementQu, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__105)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 396, __pyx_L1_error)
30659  __Pyx_GOTREF(__pyx_t_4);
30660  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_initializeElementQuadrature, __pyx_t_4) < 0) __PYX_ERR(0, 396, __pyx_L1_error)
30661  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30662 
30663  /* "ADR.pyx":398
30664  * def initializeElementQuadrature(self,mesh,t,cq):
30665  * pass
30666  * def updateSubgridErrorHistory(self,initializationPhase=False): # <<<<<<<<<<<<<<
30667  * pass
30668  * def calculateSubgridError(self,q):
30669  */
30670  __pyx_t_4 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_12SubgridError_5updateSubgridErrorHistory, 0, __pyx_n_s_SubgridError_updateSubgridErrorH, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__107)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 398, __pyx_L1_error)
30671  __Pyx_GOTREF(__pyx_t_4);
30672  __Pyx_CyFunction_SetDefaultsTuple(__pyx_t_4, __pyx_tuple__108);
30673  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_updateSubgridErrorHistory, __pyx_t_4) < 0) __PYX_ERR(0, 398, __pyx_L1_error)
30674  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30675 
30676  /* "ADR.pyx":400
30677  * def updateSubgridErrorHistory(self,initializationPhase=False):
30678  * pass
30679  * def calculateSubgridError(self,q): # <<<<<<<<<<<<<<
30680  * pass
30681  *
30682  */
30683  __pyx_t_4 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_12SubgridError_7calculateSubgridError, 0, __pyx_n_s_SubgridError_calculateSubgridErr, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__110)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 400, __pyx_L1_error)
30684  __Pyx_GOTREF(__pyx_t_4);
30685  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_calculateSubgridError, __pyx_t_4) < 0) __PYX_ERR(0, 400, __pyx_L1_error)
30686  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30687 
30688  /* "ADR.pyx":386
30689  *
30690  *
30691  * class SubgridError(SGE_base): # <<<<<<<<<<<<<<
30692  * """
30693  * SubgridError approximation for ADR equations
30694  */
30695  __pyx_t_4 = __Pyx_Py3ClassCreate(__pyx_t_2, __pyx_n_s_SubgridError, __pyx_t_1, __pyx_t_3, NULL, 0, 1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 386, __pyx_L1_error)
30696  __Pyx_GOTREF(__pyx_t_4);
30697  if (PyDict_SetItem(__pyx_d, __pyx_n_s_SubgridError, __pyx_t_4) < 0) __PYX_ERR(0, 386, __pyx_L1_error)
30698  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30699  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
30700  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30701  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30702 
30703  /* "ADR.pyx":403
30704  * pass
30705  *
30706  * class ShockCapturing(ShockCapturing_base): # <<<<<<<<<<<<<<
30707  * """
30708  * Residual-based shock capturing for ADR equations
30709  */
30710  __pyx_t_1 = __Pyx_GetModuleGlobalName(__pyx_n_s_ShockCapturing_base); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 403, __pyx_L1_error)
30711  __Pyx_GOTREF(__pyx_t_1);
30712  __pyx_t_2 = PyTuple_New(1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 403, __pyx_L1_error)
30713  __Pyx_GOTREF(__pyx_t_2);
30714  __Pyx_GIVEREF(__pyx_t_1);
30715  PyTuple_SET_ITEM(__pyx_t_2, 0, __pyx_t_1);
30716  __pyx_t_1 = 0;
30717  __pyx_t_1 = __Pyx_CalculateMetaclass(NULL, __pyx_t_2); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 403, __pyx_L1_error)
30718  __Pyx_GOTREF(__pyx_t_1);
30719  __pyx_t_3 = __Pyx_Py3MetaclassPrepare(__pyx_t_1, __pyx_t_2, __pyx_n_s_ShockCapturing, __pyx_n_s_ShockCapturing, (PyObject *) NULL, __pyx_n_s_ADR, __pyx_kp_s_Residual_based_shock_capturing); if (unlikely(!__pyx_t_3)) __PYX_ERR(0, 403, __pyx_L1_error)
30720  __Pyx_GOTREF(__pyx_t_3);
30721 
30722  /* "ADR.pyx":410
30723  * :parts: 2
30724  * """
30725  * def __init__(self,coefficients,nd,shockCapturingFactor=0.25,lag=True,nStepsToDelay=None): # <<<<<<<<<<<<<<
30726  * ShockCapturing_base.__init__(self,coefficients,nd,shockCapturingFactor,lag)
30727  * self.nStepsToDelay = nStepsToDelay
30728  */
30729  __pyx_t_4 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_14ShockCapturing_1__init__, 0, __pyx_n_s_ShockCapturing___init, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__112)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 410, __pyx_L1_error)
30730  __Pyx_GOTREF(__pyx_t_4);
30731  __Pyx_CyFunction_SetDefaultsTuple(__pyx_t_4, __pyx_tuple__113);
30732  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_init, __pyx_t_4) < 0) __PYX_ERR(0, 410, __pyx_L1_error)
30733  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30734 
30735  /* "ADR.pyx":418
30736  * self.nStepsToDelay=1
30737  * self.lag=False
30738  * def initializeElementQuadrature(self,mesh,t,cq): # <<<<<<<<<<<<<<
30739  * self.mesh=mesh
30740  * self.numDiff=[]
30741  */
30742  __pyx_t_4 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_14ShockCapturing_3initializeElementQuadrature, 0, __pyx_n_s_ShockCapturing_initializeElement, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__115)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 418, __pyx_L1_error)
30743  __Pyx_GOTREF(__pyx_t_4);
30744  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_initializeElementQuadrature, __pyx_t_4) < 0) __PYX_ERR(0, 418, __pyx_L1_error)
30745  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30746 
30747  /* "ADR.pyx":425
30748  * self.numDiff.append(cq[('numDiff',ci,ci)])
30749  * self.numDiff_last.append(cq[('numDiff',ci,ci)])
30750  * def updateShockCapturingHistory(self): # <<<<<<<<<<<<<<
30751  * self.nSteps += 1
30752  * if self.lag:
30753  */
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30755  __Pyx_GOTREF(__pyx_t_4);
30756  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_updateShockCapturingHistory, __pyx_t_4) < 0) __PYX_ERR(0, 425, __pyx_L1_error)
30757  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30758 
30759  /* "ADR.pyx":403
30760  * pass
30761  *
30762  * class ShockCapturing(ShockCapturing_base): # <<<<<<<<<<<<<<
30763  * """
30764  * Residual-based shock capturing for ADR equations
30765  */
30766  __pyx_t_4 = __Pyx_Py3ClassCreate(__pyx_t_1, __pyx_n_s_ShockCapturing, __pyx_t_2, __pyx_t_3, NULL, 0, 1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 403, __pyx_L1_error)
30767  __Pyx_GOTREF(__pyx_t_4);
30768  if (PyDict_SetItem(__pyx_d, __pyx_n_s_ShockCapturing, __pyx_t_4) < 0) __PYX_ERR(0, 403, __pyx_L1_error)
30769  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30770  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
30771  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30772  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30773 
30774  /* "ADR.pyx":438
30775  * log("VOF: max numDiff %e" % (globalMax(self.numDiff_last[0].max()),))
30776  *
30777  * class NumericalFlux_IIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior): # <<<<<<<<<<<<<<
30778  * def __init__(self,vt,getPointwiseBoundaryConditions,
30779  * getAdvectiveFluxBoundaryConditions,
30780  */
30781  __pyx_t_2 = __Pyx_GetModuleGlobalName(__pyx_n_s_proteus); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 438, __pyx_L1_error)
30782  __Pyx_GOTREF(__pyx_t_2);
30783  __pyx_t_1 = __Pyx_PyObject_GetAttrStr(__pyx_t_2, __pyx_n_s_NumericalFlux); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 438, __pyx_L1_error)
30784  __Pyx_GOTREF(__pyx_t_1);
30785  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30786  __pyx_t_2 = __Pyx_PyObject_GetAttrStr(__pyx_t_1, __pyx_n_s_Advection_DiagonalUpwind_Diffusi); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 438, __pyx_L1_error)
30787  __Pyx_GOTREF(__pyx_t_2);
30788  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30789  __pyx_t_1 = PyTuple_New(1); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 438, __pyx_L1_error)
30790  __Pyx_GOTREF(__pyx_t_1);
30791  __Pyx_GIVEREF(__pyx_t_2);
30792  PyTuple_SET_ITEM(__pyx_t_1, 0, __pyx_t_2);
30793  __pyx_t_2 = 0;
30794  __pyx_t_2 = __Pyx_CalculateMetaclass(NULL, __pyx_t_1); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 438, __pyx_L1_error)
30795  __Pyx_GOTREF(__pyx_t_2);
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30797  __Pyx_GOTREF(__pyx_t_3);
30798 
30799  /* "ADR.pyx":439
30800  *
30801  * class NumericalFlux_IIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior):
30802  * def __init__(self,vt,getPointwiseBoundaryConditions, # <<<<<<<<<<<<<<
30803  * getAdvectiveFluxBoundaryConditions,
30804  * getDiffusiveFluxBoundaryConditions):
30805  */
30806  __pyx_t_4 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_18NumericalFlux_IIPG_1__init__, 0, __pyx_n_s_NumericalFlux_IIPG___init, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__119)); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 439, __pyx_L1_error)
30807  __Pyx_GOTREF(__pyx_t_4);
30808  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_init, __pyx_t_4) < 0) __PYX_ERR(0, 439, __pyx_L1_error)
30809  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30810 
30811  /* "ADR.pyx":438
30812  * log("VOF: max numDiff %e" % (globalMax(self.numDiff_last[0].max()),))
30813  *
30814  * class NumericalFlux_IIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_IIPG_exterior): # <<<<<<<<<<<<<<
30815  * def __init__(self,vt,getPointwiseBoundaryConditions,
30816  * getAdvectiveFluxBoundaryConditions,
30817  */
30818  __pyx_t_4 = __Pyx_Py3ClassCreate(__pyx_t_2, __pyx_n_s_NumericalFlux_IIPG, __pyx_t_1, __pyx_t_3, NULL, 0, 1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 438, __pyx_L1_error)
30819  __Pyx_GOTREF(__pyx_t_4);
30820  if (PyDict_SetItem(__pyx_d, __pyx_n_s_NumericalFlux_IIPG, __pyx_t_4) < 0) __PYX_ERR(0, 438, __pyx_L1_error)
30821  __Pyx_DECREF(__pyx_t_4); __pyx_t_4 = 0;
30822  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
30823  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
30824  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
30825 
30826  /* "ADR.pyx":446
30827  * getDiffusiveFluxBoundaryConditions)
30828  *
30829  * class NumericalFlux_SIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_SIPG_exterior): # <<<<<<<<<<<<<<
30830  * def __init__(self,vt,getPointwiseBoundaryConditions,
30831  * getAdvectiveFluxBoundaryConditions,
30832  */
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30851  /* "ADR.pyx":447
30852  *
30853  * class NumericalFlux_SIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_SIPG_exterior):
30854  * def __init__(self,vt,getPointwiseBoundaryConditions, # <<<<<<<<<<<<<<
30855  * getAdvectiveFluxBoundaryConditions,
30856  * getDiffusiveFluxBoundaryConditions):
30857  */
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30862 
30863  /* "ADR.pyx":446
30864  * getDiffusiveFluxBoundaryConditions)
30865  *
30866  * class NumericalFlux_SIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_SIPG_exterior): # <<<<<<<<<<<<<<
30867  * def __init__(self,vt,getPointwiseBoundaryConditions,
30868  * getAdvectiveFluxBoundaryConditions,
30869  */
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30878  /* "ADR.pyx":454
30879  * getDiffusiveFluxBoundaryConditions)
30880  *
30881  * class NumericalFlux_NIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_NIPG_exterior): # <<<<<<<<<<<<<<
30882  * def __init__(self,vt,getPointwiseBoundaryConditions,
30883  * getAdvectiveFluxBoundaryConditions,
30884  */
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30903  /* "ADR.pyx":455
30904  *
30905  * class NumericalFlux_NIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_NIPG_exterior):
30906  * def __init__(self,vt,getPointwiseBoundaryConditions, # <<<<<<<<<<<<<<
30907  * getAdvectiveFluxBoundaryConditions,
30908  * getDiffusiveFluxBoundaryConditions):
30909  */
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30915  /* "ADR.pyx":454
30916  * getDiffusiveFluxBoundaryConditions)
30917  *
30918  * class NumericalFlux_NIPG(proteus.NumericalFlux.Advection_DiagonalUpwind_Diffusion_NIPG_exterior): # <<<<<<<<<<<<<<
30919  * def __init__(self,vt,getPointwiseBoundaryConditions,
30920  * getAdvectiveFluxBoundaryConditions,
30921  */
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30930  /* "ADR.pyx":462
30931  * getDiffusiveFluxBoundaryConditions)
30932  *
30933  * NumericalFlux = NumericalFlux_SIPG # <<<<<<<<<<<<<<
30934  *
30935  * class Coefficients(TC_base):
30936  */
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30942  /* "ADR.pyx":464
30943  * NumericalFlux = NumericalFlux_SIPG
30944  *
30945  * class Coefficients(TC_base): # <<<<<<<<<<<<<<
30946  * """
30947  * Coefficients of linear ADR equations
30948  */
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30960 
30961  /* "ADR.pyx":471
30962  * :parts: 2
30963  * """
30964  * from proteus.ctransportCoefficients import L2projectEvaluate # <<<<<<<<<<<<<<
30965  * def __init__(self,aOfX,fOfX,velocity=None,nc=1,nd=2,l2proj=None,
30966  * timeVaryingCoefficients=False,
30967  */
30968  __pyx_t_4 = PyList_New(1); if (unlikely(!__pyx_t_4)) __PYX_ERR(0, 471, __pyx_L1_error)
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30980  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
30981 
30982  /* "ADR.pyx":472
30983  * """
30984  * from proteus.ctransportCoefficients import L2projectEvaluate
30985  * def __init__(self,aOfX,fOfX,velocity=None,nc=1,nd=2,l2proj=None, # <<<<<<<<<<<<<<
30986  * timeVaryingCoefficients=False,
30987  * forceStrongDirichlet=False,
30988  */
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30995  /* "ADR.pyx":514
30996  * useSparseDiffusion=True,
30997  * movingDomain=False)
30998  * def initializeElementQuadrature(self,t,cq): # <<<<<<<<<<<<<<
30999  * nd = self.nd
31000  * for ci in range(self.nc):
31001  */
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31007  /* "ADR.pyx":525
31008  * cq[('r',ci)].flat[i] = -self.fOfX[ci](cq['x'].flat[3*i:3*(i+1)])
31009  * cq[('a',ci,ci)].flat[nd*nd*i:nd*nd*(i+1)] = self.aOfX[ci](cq['x'].flat[3*i:3*(i+1)]).flat
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31020  * c[('r',ci)].flat[i] = -self.fOfX[ci](c['x'].flat[3*i:3*(i+1)])
31021  * c[('a',ci,ci)].flat[nd*nd*i:nd*nd*(i+1)] = self.aOfX[ci](c['x'].flat[3*i:3*(i+1)]).flat
31022  * def initializeGlobalExteriorElementBoundaryQuadrature(self,t,cebqe): # <<<<<<<<<<<<<<
31023  * nd = self.nd
31024  * for c in [cebqe]:
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31032  * c[('r',ci)].flat[i] = -self.fOfX[ci](c['x'].flat[3*i:3*(i+1)])
31033  * c[('a',ci,ci)].flat[nd*nd*i:nd*nd*(i+1)] = self.aOfX[ci](c['x'].flat[3*i:3*(i+1)]).flat
31034  * def evaluate(self,t,c): # <<<<<<<<<<<<<<
31035  * if self.timeVaryingCoefficients:
31036  * nd = self.nd
31037  */
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31043  /* "ADR.pyx":464
31044  * NumericalFlux = NumericalFlux_SIPG
31045  *
31046  * class Coefficients(TC_base): # <<<<<<<<<<<<<<
31047  * """
31048  * Coefficients of linear ADR equations
31049  */
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31059  * c[('a',ci,ci)].flat[nd*nd*i:nd*nd*(i+1)] = self.aOfX[ci](c['x'].flat[3*i:3*(i+1)]).flat
31060  *
31061  * class LevelModel(proteus.Transport.OneLevelTransport): # <<<<<<<<<<<<<<
31062  * """
31063  * Optimized LevelModel for ADR equations
31064  */
31065  __pyx_t_2 = __Pyx_GetModuleGlobalName(__pyx_n_s_proteus); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 563, __pyx_L1_error)
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31084  * :parts: 2
31085  * """
31086  * nCalls=0 # <<<<<<<<<<<<<<
31087  * def __init__(self,
31088  * uDict,
31089  */
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31091 
31092  /* "ADR.pyx":571
31093  * """
31094  * nCalls=0
31095  * def __init__(self, # <<<<<<<<<<<<<<
31096  * uDict,
31097  * phiDict,
31098  */
31099  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_1__init__, 0, __pyx_n_s_LevelModel___init, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__136)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 571, __pyx_L1_error)
31100  __Pyx_GOTREF(__pyx_t_5);
31101  __Pyx_CyFunction_SetDefaultsTuple(__pyx_t_5, __pyx_tuple__137);
31102  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_init, __pyx_t_5) < 0) __PYX_ERR(0, 571, __pyx_L1_error)
31103  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31104 
31105  /* "ADR.pyx":934
31106  * compKernelFlag)
31107  * #mwf these are getting called by redistancing classes,
31108  * def calculateCoefficients(self): # <<<<<<<<<<<<<<
31109  * pass
31110  * def getResidual(self,u,r):
31111  */
31112  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_3calculateCoefficients, 0, __pyx_n_s_LevelModel_calculateCoefficients, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__139)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 934, __pyx_L1_error)
31113  __Pyx_GOTREF(__pyx_t_5);
31114  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_calculateCoefficients, __pyx_t_5) < 0) __PYX_ERR(0, 934, __pyx_L1_error)
31115  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31116 
31117  /* "ADR.pyx":936
31118  * def calculateCoefficients(self):
31119  * pass
31120  * def getResidual(self,u,r): # <<<<<<<<<<<<<<
31121  * import pdb
31122  * import copy
31123  */
31124  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_5getResidual, 0, __pyx_n_s_LevelModel_getResidual, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__141)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 936, __pyx_L1_error)
31125  __Pyx_GOTREF(__pyx_t_5);
31126  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_getResidual, __pyx_t_5) < 0) __PYX_ERR(0, 936, __pyx_L1_error)
31127  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31128 
31129  /* "ADR.pyx":1009
31130  * log(" Mass Conservation Error",level=3,data=self.coefficients.massConservationError)
31131  * self.nonlinear_function_evaluations += 1
31132  * def getJacobian(self,jacobian): # <<<<<<<<<<<<<<
31133  * #import superluWrappers
31134  * #import numpy
31135  */
31136  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_7getJacobian, 0, __pyx_n_s_LevelModel_getJacobian, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__143)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1009, __pyx_L1_error)
31137  __Pyx_GOTREF(__pyx_t_5);
31138  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_getJacobian, __pyx_t_5) < 0) __PYX_ERR(0, 1009, __pyx_L1_error)
31139  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31140 
31141  /* "ADR.pyx":1074
31142  * self.nonlinear_function_jacobian_evaluations += 1
31143  * return jacobian
31144  * def calculateElementQuadrature(self): # <<<<<<<<<<<<<<
31145  * """
31146  * Calculate the physical location and weights of the quadrature rules
31147  */
31148  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_9calculateElementQuadrature, 0, __pyx_n_s_LevelModel_calculateElementQuadr, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__145)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1074, __pyx_L1_error)
31149  __Pyx_GOTREF(__pyx_t_5);
31150  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_calculateElementQuadrature, __pyx_t_5) < 0) __PYX_ERR(0, 1074, __pyx_L1_error)
31151  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31152 
31153  /* "ADR.pyx":1093
31154  * if self.shockCapturing is not None:
31155  * self.shockCapturing.initializeElementQuadrature(self.mesh,self.timeIntegration.t,self.q)
31156  * def calculateElementBoundaryQuadrature(self): # <<<<<<<<<<<<<<
31157  * pass
31158  * def calculateExteriorElementBoundaryQuadrature(self):
31159  */
31160  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_11calculateElementBoundaryQuadrature, 0, __pyx_n_s_LevelModel_calculateElementBound, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__147)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1093, __pyx_L1_error)
31161  __Pyx_GOTREF(__pyx_t_5);
31162  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_calculateElementBoundaryQuadratu, __pyx_t_5) < 0) __PYX_ERR(0, 1093, __pyx_L1_error)
31163  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31164 
31165  /* "ADR.pyx":1095
31166  * def calculateElementBoundaryQuadrature(self):
31167  * pass
31168  * def calculateExteriorElementBoundaryQuadrature(self): # <<<<<<<<<<<<<<
31169  * self.u[0].femSpace.elementMaps.getBasisValuesTraceRef(self.elementBoundaryQuadraturePoints)
31170  * self.u[0].femSpace.elementMaps.getBasisGradientValuesTraceRef(self.elementBoundaryQuadraturePoints)
31171  */
31172  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_13calculateExteriorElementBoundaryQuadrature, 0, __pyx_n_s_LevelModel_calculateExteriorElem, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__149)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1095, __pyx_L1_error)
31173  __Pyx_GOTREF(__pyx_t_5);
31174  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_calculateExteriorElementBoundary, __pyx_t_5) < 0) __PYX_ERR(0, 1095, __pyx_L1_error)
31175  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31176 
31177  /* "ADR.pyx":1109
31178  * for cj in self.advectiveFluxBoundaryConditionsSetterDict.keys()])
31179  * self.coefficients.initializeGlobalExteriorElementBoundaryQuadrature(self.timeIntegration.t,self.ebqe)
31180  * def estimate_mt(self): # <<<<<<<<<<<<<<
31181  * pass
31182  * def calculateAuxiliaryQuantitiesAfterStep(self):
31183  */
31184  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_15estimate_mt, 0, __pyx_n_s_LevelModel_estimate_mt, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__151)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1109, __pyx_L1_error)
31185  __Pyx_GOTREF(__pyx_t_5);
31186  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_estimate_mt, __pyx_t_5) < 0) __PYX_ERR(0, 1109, __pyx_L1_error)
31187  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31188 
31189  /* "ADR.pyx":1111
31190  * def estimate_mt(self):
31191  * pass
31192  * def calculateAuxiliaryQuantitiesAfterStep(self): # <<<<<<<<<<<<<<
31193  * pass
31194  * def calculateSolutionAtQuadrature(self):
31195  */
31196  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_17calculateAuxiliaryQuantitiesAfterStep, 0, __pyx_n_s_LevelModel_calculateAuxiliaryQua, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__153)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1111, __pyx_L1_error)
31197  __Pyx_GOTREF(__pyx_t_5);
31198  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_calculateAuxiliaryQuantitiesAfte, __pyx_t_5) < 0) __PYX_ERR(0, 1111, __pyx_L1_error)
31199  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31200 
31201  /* "ADR.pyx":1113
31202  * def calculateAuxiliaryQuantitiesAfterStep(self):
31203  * pass
31204  * def calculateSolutionAtQuadrature(self): # <<<<<<<<<<<<<<
31205  * pass
31206  */
31207  __pyx_t_5 = __Pyx_CyFunction_NewEx(&__pyx_mdef_3ADR_10LevelModel_19calculateSolutionAtQuadrature, 0, __pyx_n_s_LevelModel_calculateSolutionAtQu, NULL, __pyx_n_s_ADR, __pyx_d, ((PyObject *)__pyx_codeobj__155)); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 1113, __pyx_L1_error)
31208  __Pyx_GOTREF(__pyx_t_5);
31209  if (PyObject_SetItem(__pyx_t_3, __pyx_n_s_calculateSolutionAtQuadrature, __pyx_t_5) < 0) __PYX_ERR(0, 1113, __pyx_L1_error)
31210  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31211 
31212  /* "ADR.pyx":563
31213  * c[('a',ci,ci)].flat[nd*nd*i:nd*nd*(i+1)] = self.aOfX[ci](c['x'].flat[3*i:3*(i+1)]).flat
31214  *
31215  * class LevelModel(proteus.Transport.OneLevelTransport): # <<<<<<<<<<<<<<
31216  * """
31217  * Optimized LevelModel for ADR equations
31218  */
31219  __pyx_t_5 = __Pyx_Py3ClassCreate(__pyx_t_2, __pyx_n_s_LevelModel, __pyx_t_1, __pyx_t_3, NULL, 0, 1); if (unlikely(!__pyx_t_5)) __PYX_ERR(0, 563, __pyx_L1_error)
31220  __Pyx_GOTREF(__pyx_t_5);
31221  if (PyDict_SetItem(__pyx_d, __pyx_n_s_LevelModel, __pyx_t_5) < 0) __PYX_ERR(0, 563, __pyx_L1_error)
31222  __Pyx_DECREF(__pyx_t_5); __pyx_t_5 = 0;
31223  __Pyx_DECREF(__pyx_t_3); __pyx_t_3 = 0;
31224  __Pyx_DECREF(__pyx_t_2); __pyx_t_2 = 0;
31225  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
31226 
31227  /* "ADR.pyx":1
31228  * # A type of -*- python -*- file # <<<<<<<<<<<<<<
31229  * """
31230  * An optimized Advection-Diffusion-Reaction module
31231  */
31232  __pyx_t_1 = PyDict_New(); if (unlikely(!__pyx_t_1)) __PYX_ERR(0, 1, __pyx_L1_error)
31233  __Pyx_GOTREF(__pyx_t_1);
31234  if (PyDict_SetItem(__pyx_d, __pyx_n_s_test, __pyx_t_1) < 0) __PYX_ERR(0, 1, __pyx_L1_error)
31235  __Pyx_DECREF(__pyx_t_1); __pyx_t_1 = 0;
31236 
31237  /* "linux2/lib/python2.7/site-packages/Cython/Includes/numpy/__init__.pxd":997
31238  * raise ImportError("numpy.core.umath failed to import")
31239  *
31240  * cdef inline int import_ufunc() except -1: # <<<<<<<<<<<<<<
31241  * try:
31242  * _import_umath()
31243  */
31244 
31245  /*--- Wrapped vars code ---*/
31246 
31247  goto __pyx_L0;
31248  __pyx_L1_error:;
31249  __Pyx_XDECREF(__pyx_t_1);
31250  __Pyx_XDECREF(__pyx_t_2);
31251  __Pyx_XDECREF(__pyx_t_3);
31252  __Pyx_XDECREF(__pyx_t_4);
31253  __Pyx_XDECREF(__pyx_t_5);
31254  if (__pyx_m) {
31255  if (__pyx_d) {
31256  __Pyx_AddTraceback("init ADR", __pyx_clineno, __pyx_lineno, __pyx_filename);
31257  }
31258  Py_DECREF(__pyx_m); __pyx_m = 0;
31259  } else if (!PyErr_Occurred()) {
31260  PyErr_SetString(PyExc_ImportError, "init ADR");
31261  }
31262  __pyx_L0:;
31263  __Pyx_RefNannyFinishContext();
31264  #if PY_MAJOR_VERSION < 3
31265  return;
31266  #else
31267  return __pyx_m;
31268  #endif
31269 }
31270 
31271 /* --- Runtime support code --- */
31272 /* Refnanny */
31273 #if CYTHON_REFNANNY
31274 static __Pyx_RefNannyAPIStruct *__Pyx_RefNannyImportAPI(const char *modname) {
31275  PyObject *m = NULL, *p = NULL;
31276  void *r = NULL;
31277  m = PyImport_ImportModule((char *)modname);
31278  if (!m) goto end;
31279  p = PyObject_GetAttrString(m, (char *)"RefNannyAPI");
31280  if (!p) goto end;
31281  r = PyLong_AsVoidPtr(p);
31282 end:
31283  Py_XDECREF(p);
31284  Py_XDECREF(m);
31285  return (__Pyx_RefNannyAPIStruct *)r;
31286 }
31287 #endif
31288 
31289 /* GetBuiltinName */
31290 static PyObject *__Pyx_GetBuiltinName(PyObject *name) {
31291  PyObject* result = __Pyx_PyObject_GetAttrStr(__pyx_b, name);
31292  if (unlikely(!result)) {
31293  PyErr_Format(PyExc_NameError,
31294 #if PY_MAJOR_VERSION >= 3
31295  "name '%U' is not defined", name);
31296 #else
31297  "name '%.200s' is not defined", PyString_AS_STRING(name));
31298 #endif
31299  }
31300  return result;
31301 }
31302 
31303 /* RaiseArgTupleInvalid */
31304 static void __Pyx_RaiseArgtupleInvalid(
31305  const char* func_name,
31306  int exact,
31307  Py_ssize_t num_min,
31308  Py_ssize_t num_max,
31309  Py_ssize_t num_found)
31310 {
31311  Py_ssize_t num_expected;
31312  const char *more_or_less;
31313  if (num_found < num_min) {
31314  num_expected = num_min;
31315  more_or_less = "at least";
31316  } else {
31317  num_expected = num_max;
31318  more_or_less = "at most";
31319  }
31320  if (exact) {
31321  more_or_less = "exactly";
31322  }
31323  PyErr_Format(PyExc_TypeError,
31324  "%.200s() takes %.8s %" CYTHON_FORMAT_SSIZE_T "d positional argument%.1s (%" CYTHON_FORMAT_SSIZE_T "d given)",
31325  func_name, more_or_less, num_expected,
31326  (num_expected == 1) ? "" : "s", num_found);
31327 }
31328 
31329 /* RaiseDoubleKeywords */
31330 static void __Pyx_RaiseDoubleKeywordsError(
31331  const char* func_name,
31332  PyObject* kw_name)
31333 {
31334  PyErr_Format(PyExc_TypeError,
31335  #if PY_MAJOR_VERSION >= 3
31336  "%s() got multiple values for keyword argument '%U'", func_name, kw_name);
31337  #else
31338  "%s() got multiple values for keyword argument '%s'", func_name,
31339  PyString_AsString(kw_name));
31340  #endif
31341 }
31342 
31343 /* ParseKeywords */
31344 static int __Pyx_ParseOptionalKeywords(
31345  PyObject *kwds,
31346  PyObject **argnames[],
31347  PyObject *kwds2,
31348  PyObject *values[],
31349  Py_ssize_t num_pos_args,
31350  const char* function_name)
31351 {
31352  PyObject *key = 0, *value = 0;
31353  Py_ssize_t pos = 0;
31354  PyObject*** name;
31355  PyObject*** first_kw_arg = argnames + num_pos_args;
31356  while (PyDict_Next(kwds, &pos, &key, &value)) {
31357  name = first_kw_arg;
31358  while (*name && (**name != key)) name++;
31359  if (*name) {
31360  values[name-argnames] = value;
31361  continue;
31362  }
31363  name = first_kw_arg;
31364  #if PY_MAJOR_VERSION < 3
31365  if (likely(PyString_CheckExact(key)) || likely(PyString_Check(key))) {
31366  while (*name) {
31367  if ((CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**name) == PyString_GET_SIZE(key))
31368  && _PyString_Eq(**name, key)) {
31369  values[name-argnames] = value;
31370  break;
31371  }
31372  name++;
31373  }
31374  if (*name) continue;
31375  else {
31376  PyObject*** argname = argnames;
31377  while (argname != first_kw_arg) {
31378  if ((**argname == key) || (
31379  (CYTHON_COMPILING_IN_PYPY || PyString_GET_SIZE(**argname) == PyString_GET_SIZE(key))
31380  && _PyString_Eq(**argname, key))) {
31381  goto arg_passed_twice;
31382  }
31383  argname++;
31384  }
31385  }
31386  } else
31387  #endif
31388  if (likely(PyUnicode_Check(key))) {
31389  while (*name) {
31390  int cmp = (**name == key) ? 0 :
31391  #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
31392  (PyUnicode_GET_SIZE(**name) != PyUnicode_GET_SIZE(key)) ? 1 :
31393  #endif
31394  PyUnicode_Compare(**name, key);
31395  if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
31396  if (cmp == 0) {
31397  values[name-argnames] = value;
31398  break;
31399  }
31400  name++;
31401  }
31402  if (*name) continue;
31403  else {
31404  PyObject*** argname = argnames;
31405  while (argname != first_kw_arg) {
31406  int cmp = (**argname == key) ? 0 :
31407  #if !CYTHON_COMPILING_IN_PYPY && PY_MAJOR_VERSION >= 3
31408  (PyUnicode_GET_SIZE(**argname) != PyUnicode_GET_SIZE(key)) ? 1 :
31409  #endif
31410  PyUnicode_Compare(**argname, key);
31411  if (cmp < 0 && unlikely(PyErr_Occurred())) goto bad;
31412  if (cmp == 0) goto arg_passed_twice;
31413  argname++;
31414  }
31415  }
31416  } else
31417  goto invalid_keyword_type;
31418  if (kwds2) {
31419  if (unlikely(PyDict_SetItem(kwds2, key, value))) goto bad;
31420  } else {
31421  goto invalid_keyword;
31422  }
31423  }
31424  return 0;
31425 arg_passed_twice:
31426  __Pyx_RaiseDoubleKeywordsError(function_name, key);
31427  goto bad;
31428 invalid_keyword_type:
31429  PyErr_Format(PyExc_TypeError,
31430  "%.200s() keywords must be strings", function_name);
31431  goto bad;
31432 invalid_keyword:
31433  PyErr_Format(PyExc_TypeError,
31434  #if PY_MAJOR_VERSION < 3
31435  "%.200s() got an unexpected keyword argument '%.200s'",
31436  function_name, PyString_AsString(key));
31437  #else
31438  "%s() got an unexpected keyword argument '%U'",
31439  function_name, key);
31440  #endif
31441 bad:
31442  return -1;
31443 }
31444 
31445 /* ArgTypeTest */
31446 static void __Pyx_RaiseArgumentTypeInvalid(const char* name, PyObject *obj, PyTypeObject *type) {
31447  PyErr_Format(PyExc_TypeError,
31448  "Argument '%.200s' has incorrect type (expected %.200s, got %.200s)",
31449  name, type->tp_name, Py_TYPE(obj)->tp_name);
31450 }
31451 static CYTHON_INLINE int __Pyx_ArgTypeTest(PyObject *obj, PyTypeObject *type, int none_allowed,
31452  const char *name, int exact)
31453 {
31454  if (unlikely(!type)) {
31455  PyErr_SetString(PyExc_SystemError, "Missing type object");
31456  return 0;
31457  }
31458  if (none_allowed && obj == Py_None) return 1;
31459  else if (exact) {
31460  if (likely(Py_TYPE(obj) == type)) return 1;
31461  #if PY_MAJOR_VERSION == 2
31462  else if ((type == &PyBaseString_Type) && likely(__Pyx_PyBaseString_CheckExact(obj))) return 1;
31463  #endif
31464  }
31465  else {
31466  if (likely(PyObject_TypeCheck(obj, type))) return 1;
31467  }
31468  __Pyx_RaiseArgumentTypeInvalid(name, obj, type);
31469  return 0;
31470 }
31471 
31472 /* PyCFunctionFastCall */
31473 #if CYTHON_FAST_PYCCALL
31474 static CYTHON_INLINE PyObject * __Pyx_PyCFunction_FastCall(PyObject *func_obj, PyObject **args, Py_ssize_t nargs) {
31475  PyCFunctionObject *func = (PyCFunctionObject*)func_obj;
31476  PyCFunction meth = PyCFunction_GET_FUNCTION(func);
31477  PyObject *self = PyCFunction_GET_SELF(func);
31478  assert(PyCFunction_Check(func));
31479  assert(METH_FASTCALL == (PyCFunction_GET_FLAGS(func) & ~(METH_CLASS | METH_STATIC | METH_COEXIST)));
31480  assert(nargs >= 0);
31481  assert(nargs == 0 || args != NULL);
31482  /* _PyCFunction_FastCallDict() must not be called with an exception set,
31483  because it may clear it (directly or indirectly) and so the
31484  caller loses its exception */
31485  assert(!PyErr_Occurred());
31486  return (*((__Pyx_PyCFunctionFast)meth)) (self, args, nargs, NULL);
31487 }
31488 #endif // CYTHON_FAST_PYCCALL
31489 
31490 /* PyFunctionFastCall */
31491 #if CYTHON_FAST_PYCALL
31492 #include "frameobject.h"
31493 static PyObject* __Pyx_PyFunction_FastCallNoKw(PyCodeObject *co, PyObject **args, Py_ssize_t na,
31494  PyObject *globals) {
31495  PyFrameObject *f;
31496  PyThreadState *tstate = PyThreadState_GET();
31497  PyObject **fastlocals;
31498  Py_ssize_t i;
31499  PyObject *result;
31500  assert(globals != NULL);
31501  /* XXX Perhaps we should create a specialized
31502  PyFrame_New() that doesn't take locals, but does
31503  take builtins without sanity checking them.
31504  */
31505  assert(tstate != NULL);
31506  f = PyFrame_New(tstate, co, globals, NULL);
31507  if (f == NULL) {
31508  return NULL;
31509  }
31510  fastlocals = f->f_localsplus;
31511  for (i = 0; i < na; i++) {
31512  Py_INCREF(*args);
31513  fastlocals[i] = *args++;
31514  }
31515  result = PyEval_EvalFrameEx(f,0);
31516  ++tstate->recursion_depth;
31517  Py_DECREF(f);
31518  --tstate->recursion_depth;
31519  return result;
31520 }
31521 #if 1 || PY_VERSION_HEX < 0x030600B1
31522 static PyObject *__Pyx_PyFunction_FastCallDict(PyObject *func, PyObject **args, int nargs, PyObject *kwargs) {
31523  PyCodeObject *co = (PyCodeObject *)PyFunction_GET_CODE(func);
31524  PyObject *globals = PyFunction_GET_GLOBALS(func);
31525  PyObject *argdefs = PyFunction_GET_DEFAULTS(func);
31526  PyObject *closure;
31527 #if PY_MAJOR_VERSION >= 3
31528  PyObject *kwdefs;
31529 #endif
31530  PyObject *kwtuple, **k;
31531  PyObject **d;
31532  Py_ssize_t nd;
31533  Py_ssize_t nk;
31534  PyObject *result;
31535  assert(kwargs == NULL || PyDict_Check(kwargs));
31536  nk = kwargs ? PyDict_Size(kwargs) : 0;
31537  if (Py_EnterRecursiveCall((char*)" while calling a Python object")) {
31538  return NULL;
31539  }
31540  if (
31541 #if PY_MAJOR_VERSION >= 3
31542  co->co_kwonlyargcount == 0 &&
31543 #endif
31544  likely(kwargs == NULL || nk == 0) &&
31545  co->co_flags == (CO_OPTIMIZED | CO_NEWLOCALS | CO_NOFREE)) {
31546  if (argdefs == NULL && co->co_argcount == nargs) {
31547  result = __Pyx_PyFunction_FastCallNoKw(co, args, nargs, globals);
31548  goto done;
31549  }
31550  else if (nargs == 0 && argdefs != NULL
31551  && co->co_argcount == Py_SIZE(argdefs)) {
31552  /* function called with no arguments, but all parameters have
31553  a default value: use default values as arguments .*/
31554  args = &PyTuple_GET_ITEM(argdefs, 0);
31555  result =__Pyx_PyFunction_FastCallNoKw(co, args, Py_SIZE(argdefs), globals);
31556  goto done;
31557  }
31558  }
31559  if (kwargs != NULL) {
31560  Py_ssize_t pos, i;
31561  kwtuple = PyTuple_New(2 * nk);
31562  if (kwtuple == NULL) {
31563  result = NULL;
31564  goto done;
31565  }
31566  k = &PyTuple_GET_ITEM(kwtuple, 0);
31567  pos = i = 0;
31568  while (PyDict_Next(kwargs, &pos, &k[i], &k[i+1])) {
31569  Py_INCREF(k[i]);
31570  Py_INCREF(k[i+1]);
31571  i += 2;
31572  }
31573  nk = i / 2;
31574  }
31575  else {
31576  kwtuple = NULL;
31577  k = NULL;
31578  }
31579  closure = PyFunction_GET_CLOSURE(func);
31580 #if PY_MAJOR_VERSION >= 3
31581  kwdefs = PyFunction_GET_KW_DEFAULTS(func);
31582 #endif
31583  if (argdefs != NULL) {
31584  d = &PyTuple_GET_ITEM(argdefs, 0);
31585  nd = Py_SIZE(argdefs);
31586  }
31587  else {
31588  d = NULL;
31589  nd = 0;
31590  }
31591 #if PY_MAJOR_VERSION >= 3
31592  result = PyEval_EvalCodeEx((PyObject*)co, globals, (PyObject *)NULL,
31593  args, nargs,
31594  k, (int)nk,
31595  d, (int)nd, kwdefs, closure);
31596 #else
31597  result = PyEval_EvalCodeEx(co, globals, (PyObject *)NULL,
31598  args, nargs,
31599  k, (int)nk,
31600  d, (int)nd, closure);
31601 #endif
31602  Py_XDECREF(kwtuple);
31603 done:
31604  Py_LeaveRecursiveCall();
31605  return result;
31606 }
31607 #endif // CPython < 3.6
31608 #endif // CYTHON_FAST_PYCALL
31609 
31610 /* PyObjectCall */
31611 #if CYTHON_COMPILING_IN_CPYTHON
31612 static CYTHON_INLINE PyObject* __Pyx_PyObject_Call(PyObject *func, PyObject *arg, PyObject *kw) {
31613  PyObject *result;
31614  ternaryfunc call = func->ob_type->tp_call;
31615  if (unlikely(!call))
31616  return PyObject_Call(func, arg, kw);
31617  if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
31618  return NULL;
31619  result = (*call)(func, arg, kw);
31620  Py_LeaveRecursiveCall();
31621  if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
31622  PyErr_SetString(
31623  PyExc_SystemError,
31624  "NULL result without error in PyObject_Call");
31625  }
31626  return result;
31627 }
31628 #endif
31629 
31630 /* PyObjectCallMethO */
31631 #if CYTHON_COMPILING_IN_CPYTHON
31632 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallMethO(PyObject *func, PyObject *arg) {
31633  PyObject *self, *result;
31634  PyCFunction cfunc;
31635  cfunc = PyCFunction_GET_FUNCTION(func);
31636  self = PyCFunction_GET_SELF(func);
31637  if (unlikely(Py_EnterRecursiveCall((char*)" while calling a Python object")))
31638  return NULL;
31639  result = cfunc(self, arg);
31640  Py_LeaveRecursiveCall();
31641  if (unlikely(!result) && unlikely(!PyErr_Occurred())) {
31642  PyErr_SetString(
31643  PyExc_SystemError,
31644  "NULL result without error in PyObject_Call");
31645  }
31646  return result;
31647 }
31648 #endif
31649 
31650 /* PyObjectCallOneArg */
31651 #if CYTHON_COMPILING_IN_CPYTHON
31652 static PyObject* __Pyx__PyObject_CallOneArg(PyObject *func, PyObject *arg) {
31653  PyObject *result;
31654  PyObject *args = PyTuple_New(1);
31655  if (unlikely(!args)) return NULL;
31656  Py_INCREF(arg);
31657  PyTuple_SET_ITEM(args, 0, arg);
31658  result = __Pyx_PyObject_Call(func, args, NULL);
31659  Py_DECREF(args);
31660  return result;
31661 }
31662 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
31663 #if CYTHON_FAST_PYCALL
31664  if (PyFunction_Check(func)) {
31665  return __Pyx_PyFunction_FastCall(func, &arg, 1);
31666  }
31667 #endif
31668 #ifdef __Pyx_CyFunction_USED
31669  if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) {
31670 #else
31671  if (likely(PyCFunction_Check(func))) {
31672 #endif
31673  if (likely(PyCFunction_GET_FLAGS(func) & METH_O)) {
31674  return __Pyx_PyObject_CallMethO(func, arg);
31675 #if CYTHON_FAST_PYCCALL
31676  } else if (PyCFunction_GET_FLAGS(func) & METH_FASTCALL) {
31677  return __Pyx_PyCFunction_FastCall(func, &arg, 1);
31678 #endif
31679  }
31680  }
31681  return __Pyx__PyObject_CallOneArg(func, arg);
31682 }
31683 #else
31684 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallOneArg(PyObject *func, PyObject *arg) {
31685  PyObject *result;
31686  PyObject *args = PyTuple_Pack(1, arg);
31687  if (unlikely(!args)) return NULL;
31688  result = __Pyx_PyObject_Call(func, args, NULL);
31689  Py_DECREF(args);
31690  return result;
31691 }
31692 #endif
31693 
31694 /* PyObjectCallNoArg */
31695  #if CYTHON_COMPILING_IN_CPYTHON
31696 static CYTHON_INLINE PyObject* __Pyx_PyObject_CallNoArg(PyObject *func) {
31697 #if CYTHON_FAST_PYCALL
31698  if (PyFunction_Check(func)) {
31699  return __Pyx_PyFunction_FastCall(func, NULL, 0);
31700  }
31701 #endif
31702 #ifdef __Pyx_CyFunction_USED
31703  if (likely(PyCFunction_Check(func) || PyObject_TypeCheck(func, __pyx_CyFunctionType))) {
31704 #else
31705  if (likely(PyCFunction_Check(func))) {
31706 #endif
31707  if (likely(PyCFunction_GET_FLAGS(func) & METH_NOARGS)) {
31708  return __Pyx_PyObject_CallMethO(func, NULL);
31709  }
31710  }
31711  return __Pyx_PyObject_Call(func, __pyx_empty_tuple, NULL);
31712 }
31713 #endif
31714 
31715 /* RaiseTooManyValuesToUnpack */
31716  static CYTHON_INLINE void __Pyx_RaiseTooManyValuesError(Py_ssize_t expected) {
31717  PyErr_Format(PyExc_ValueError,
31718  "too many values to unpack (expected %" CYTHON_FORMAT_SSIZE_T "d)", expected);
31719 }
31720 
31721 /* RaiseNeedMoreValuesToUnpack */
31722  static CYTHON_INLINE void __Pyx_RaiseNeedMoreValuesError(Py_ssize_t index) {
31723  PyErr_Format(PyExc_ValueError,
31724  "need more than %" CYTHON_FORMAT_SSIZE_T "d value%.1s to unpack",
31725  index, (index == 1) ? "" : "s");
31726 }
31727 
31728 /* IterFinish */
31729  static CYTHON_INLINE int __Pyx_IterFinish(void) {
31730 #if CYTHON_FAST_THREAD_STATE
31731  PyThreadState *tstate = PyThreadState_GET();
31732  PyObject* exc_type = tstate->curexc_type;
31733  if (unlikely(exc_type)) {
31734  if (likely(exc_type == PyExc_StopIteration) || PyErr_GivenExceptionMatches(exc_type, PyExc_StopIteration)) {
31735  PyObject *exc_value, *exc_tb;
31736  exc_value = tstate->curexc_value;
31737  exc_tb = tstate->curexc_traceback;
31738  tstate->curexc_type = 0;
31739  tstate->curexc_value = 0;
31740  tstate->curexc_traceback = 0;
31741  Py_DECREF(exc_type);
31742  Py_XDECREF(exc_value);
31743  Py_XDECREF(exc_tb);
31744  return 0;
31745  } else {
31746  return -1;
31747  }
31748  }
31749  return 0;
31750 #else
31751  if (unlikely(PyErr_Occurred())) {
31752  if (likely(PyErr_ExceptionMatches(PyExc_StopIteration))) {
31753  PyErr_Clear();
31754  return 0;
31755  } else {
31756  return -1;
31757  }
31758  }
31759  return 0;
31760 #endif
31761 }
31762 
31763 /* UnpackItemEndCheck */
31764  static int __Pyx_IternextUnpackEndCheck(PyObject *retval, Py_ssize_t expected) {
31765  if (unlikely(retval)) {
31766  Py_DECREF(retval);
31767  __Pyx_RaiseTooManyValuesError(expected);
31768  return -1;
31769  } else {
31770  return __Pyx_IterFinish();
31771  }
31772  return 0;
31773 }
31774 
31775 /* ExtTypeTest */
31776  static CYTHON_INLINE int __Pyx_TypeTest(PyObject *obj, PyTypeObject *type) {
31777  if (unlikely(!type)) {
31778  PyErr_SetString(PyExc_SystemError, "Missing type object");
31779  return 0;
31780  }
31781  if (likely(PyObject_TypeCheck(obj, type)))
31782  return 1;
31783  PyErr_Format(PyExc_TypeError, "Cannot convert %.200s to %.200s",
31784  Py_TYPE(obj)->tp_name, type->tp_name);
31785  return 0;
31786 }
31787 
31788 /* GetModuleGlobalName */
31789  static CYTHON_INLINE PyObject *__Pyx_GetModuleGlobalName(PyObject *name) {
31790  PyObject *result;
31791 #if !CYTHON_AVOID_BORROWED_REFS
31792  result = PyDict_GetItem(__pyx_d, name);
31793  if (likely(result)) {
31794  Py_INCREF(result);
31795  } else {
31796 #else
31797  result = PyObject_GetItem(__pyx_d, name);
31798  if (!result) {
31799  PyErr_Clear();
31800 #endif
31801  result = __Pyx_GetBuiltinName(name);
31802  }
31803  return result;
31804 }
31805 
31806 /* PyObjectCallMethod1 */
31807  static PyObject* __Pyx_PyObject_CallMethod1(PyObject* obj, PyObject* method_name, PyObject* arg) {
31808  PyObject *method, *result = NULL;
31809  method = __Pyx_PyObject_GetAttrStr(obj, method_name);
31810  if (unlikely(!method)) goto done;
31811 #if CYTHON_UNPACK_METHODS
31812  if (likely(PyMethod_Check(method))) {
31813  PyObject *self = PyMethod_GET_SELF(method);
31814  if (likely(self)) {
31815  PyObject *args;
31816  PyObject *function = PyMethod_GET_FUNCTION(method);
31817  #if CYTHON_FAST_PYCALL
31818  if (PyFunction_Check(function)) {
31819  PyObject *args[2] = {self, arg};
31820  result = __Pyx_PyFunction_FastCall(function, args, 2);
31821  goto done;
31822  }
31823  #endif
31824  #if CYTHON_FAST_PYCCALL
31825  if (__Pyx_PyFastCFunction_Check(function)) {
31826  PyObject *args[2] = {self, arg};
31827  result = __Pyx_PyCFunction_FastCall(function, args, 2);
31828  goto done;
31829  }
31830  #endif
31831  args = PyTuple_New(2);
31832  if (unlikely(!args)) goto done;
31833  Py_INCREF(self);
31834  PyTuple_SET_ITEM(args, 0, self);
31835  Py_INCREF(arg);
31836  PyTuple_SET_ITEM(args, 1, arg);
31837  Py_INCREF(function);
31838  Py_DECREF(method); method = NULL;
31839  result = __Pyx_PyObject_Call(function, args, NULL);
31840  Py_DECREF(args);
31841  Py_DECREF(function);
31842  return result;
31843  }
31844  }
31845 #endif
31846  result = __Pyx_PyObject_CallOneArg(method, arg);
31847 done:
31848  Py_XDECREF(method);
31849  return result;
31850 }
31851 
31852 /* append */
31853  static CYTHON_INLINE int __Pyx_PyObject_Append(PyObject* L, PyObject* x) {
31854  if (likely(PyList_CheckExact(L))) {
31855  if (unlikely(__Pyx_PyList_Append(L, x) < 0)) return -1;
31856  } else {
31857  PyObject* retval = __Pyx_PyObject_CallMethod1(L, __pyx_n_s_append, x);
31858  if (unlikely(!retval))
31859  return -1;
31860  Py_DECREF(retval);
31861  }
31862  return 0;
31863 }
31864 
31865 /* PyIntBinop */
31866  #if !CYTHON_COMPILING_IN_PYPY
31867 static PyObject* __Pyx_PyInt_AddObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) {
31868  #if PY_MAJOR_VERSION < 3
31869  if (likely(PyInt_CheckExact(op1))) {
31870  const long b = intval;
31871  long x;
31872  long a = PyInt_AS_LONG(op1);
31873  x = (long)((unsigned long)a + b);
31874  if (likely((x^a) >= 0 || (x^b) >= 0))
31875  return PyInt_FromLong(x);
31876  return PyLong_Type.tp_as_number->nb_add(op1, op2);
31877  }
31878  #endif
31879  #if CYTHON_USE_PYLONG_INTERNALS
31880  if (likely(PyLong_CheckExact(op1))) {
31881  const long b = intval;
31882  long a, x;
31883 #ifdef HAVE_LONG_LONG
31884  const PY_LONG_LONG llb = intval;
31885  PY_LONG_LONG lla, llx;
31886 #endif
31887  const digit* digits = ((PyLongObject*)op1)->ob_digit;
31888  const Py_ssize_t size = Py_SIZE(op1);
31889  if (likely(__Pyx_sst_abs(size) <= 1)) {
31890  a = likely(size) ? digits[0] : 0;
31891  if (size == -1) a = -a;
31892  } else {
31893  switch (size) {
31894  case -2:
31895  if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
31896  a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
31897  break;
31898 #ifdef HAVE_LONG_LONG
31899  } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
31900  lla = -(PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
31901  goto long_long;
31902 #endif
31903  }
31904  case 2:
31905  if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
31906  a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
31907  break;
31908 #ifdef HAVE_LONG_LONG
31909  } else if (8 * sizeof(PY_LONG_LONG) - 1 > 2 * PyLong_SHIFT) {
31910  lla = (PY_LONG_LONG) (((((unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
31911  goto long_long;
31912 #endif
31913  }
31914  case -3:
31915  if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
31916  a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
31917  break;
31918 #ifdef HAVE_LONG_LONG
31919  } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
31920  lla = -(PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
31921  goto long_long;
31922 #endif
31923  }
31924  case 3:
31925  if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
31926  a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
31927  break;
31928 #ifdef HAVE_LONG_LONG
31929  } else if (8 * sizeof(PY_LONG_LONG) - 1 > 3 * PyLong_SHIFT) {
31930  lla = (PY_LONG_LONG) (((((((unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
31931  goto long_long;
31932 #endif
31933  }
31934  case -4:
31935  if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
31936  a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
31937  break;
31938 #ifdef HAVE_LONG_LONG
31939  } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
31940  lla = -(PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
31941  goto long_long;
31942 #endif
31943  }
31944  case 4:
31945  if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
31946  a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
31947  break;
31948 #ifdef HAVE_LONG_LONG
31949  } else if (8 * sizeof(PY_LONG_LONG) - 1 > 4 * PyLong_SHIFT) {
31950  lla = (PY_LONG_LONG) (((((((((unsigned PY_LONG_LONG)digits[3]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[2]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[1]) << PyLong_SHIFT) | (unsigned PY_LONG_LONG)digits[0]));
31951  goto long_long;
31952 #endif
31953  }
31954  default: return PyLong_Type.tp_as_number->nb_add(op1, op2);
31955  }
31956  }
31957  x = a + b;
31958  return PyLong_FromLong(x);
31959 #ifdef HAVE_LONG_LONG
31960  long_long:
31961  llx = lla + llb;
31962  return PyLong_FromLongLong(llx);
31963 #endif
31964 
31965 
31966  }
31967  #endif
31968  if (PyFloat_CheckExact(op1)) {
31969  const long b = intval;
31970  double a = PyFloat_AS_DOUBLE(op1);
31971  double result;
31972  PyFPE_START_PROTECT("add", return NULL)
31973  result = ((double)a) + (double)b;
31974  PyFPE_END_PROTECT(result)
31975  return PyFloat_FromDouble(result);
31976  }
31977  return (inplace ? PyNumber_InPlaceAdd : PyNumber_Add)(op1, op2);
31978 }
31979 #endif
31980 
31981 /* SliceObject */
31982  static CYTHON_INLINE int __Pyx_PyObject_SetSlice(PyObject* obj, PyObject* value,
31983  Py_ssize_t cstart, Py_ssize_t cstop,
31984  PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice,
31985  int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) {
31986 #if CYTHON_USE_TYPE_SLOTS
31987  PyMappingMethods* mp;
31988 #if PY_MAJOR_VERSION < 3
31989  PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence;
31990  if (likely(ms && ms->sq_ass_slice)) {
31991  if (!has_cstart) {
31992  if (_py_start && (*_py_start != Py_None)) {
31993  cstart = __Pyx_PyIndex_AsSsize_t(*_py_start);
31994  if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
31995  } else
31996  cstart = 0;
31997  }
31998  if (!has_cstop) {
31999  if (_py_stop && (*_py_stop != Py_None)) {
32000  cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop);
32001  if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
32002  } else
32003  cstop = PY_SSIZE_T_MAX;
32004  }
32005  if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) {
32006  Py_ssize_t l = ms->sq_length(obj);
32007  if (likely(l >= 0)) {
32008  if (cstop < 0) {
32009  cstop += l;
32010  if (cstop < 0) cstop = 0;
32011  }
32012  if (cstart < 0) {
32013  cstart += l;
32014  if (cstart < 0) cstart = 0;
32015  }
32016  } else {
32017  if (!PyErr_ExceptionMatches(PyExc_OverflowError))
32018  goto bad;
32019  PyErr_Clear();
32020  }
32021  }
32022  return ms->sq_ass_slice(obj, cstart, cstop, value);
32023  }
32024 #endif
32025  mp = Py_TYPE(obj)->tp_as_mapping;
32026  if (likely(mp && mp->mp_ass_subscript))
32027 #endif
32028  {
32029  int result;
32030  PyObject *py_slice, *py_start, *py_stop;
32031  if (_py_slice) {
32032  py_slice = *_py_slice;
32033  } else {
32034  PyObject* owned_start = NULL;
32035  PyObject* owned_stop = NULL;
32036  if (_py_start) {
32037  py_start = *_py_start;
32038  } else {
32039  if (has_cstart) {
32040  owned_start = py_start = PyInt_FromSsize_t(cstart);
32041  if (unlikely(!py_start)) goto bad;
32042  } else
32043  py_start = Py_None;
32044  }
32045  if (_py_stop) {
32046  py_stop = *_py_stop;
32047  } else {
32048  if (has_cstop) {
32049  owned_stop = py_stop = PyInt_FromSsize_t(cstop);
32050  if (unlikely(!py_stop)) {
32051  Py_XDECREF(owned_start);
32052  goto bad;
32053  }
32054  } else
32055  py_stop = Py_None;
32056  }
32057  py_slice = PySlice_New(py_start, py_stop, Py_None);
32058  Py_XDECREF(owned_start);
32059  Py_XDECREF(owned_stop);
32060  if (unlikely(!py_slice)) goto bad;
32061  }
32062 #if CYTHON_USE_TYPE_SLOTS
32063  result = mp->mp_ass_subscript(obj, py_slice, value);
32064 #else
32065  result = value ? PyObject_SetItem(obj, py_slice, value) : PyObject_DelItem(obj, py_slice);
32066 #endif
32067  if (!_py_slice) {
32068  Py_DECREF(py_slice);
32069  }
32070  return result;
32071  }
32072  PyErr_Format(PyExc_TypeError,
32073  "'%.200s' object does not support slice %.10s",
32074  Py_TYPE(obj)->tp_name, value ? "assignment" : "deletion");
32075 bad:
32076  return -1;
32077 }
32078 
32079 /* GetItemInt */
32080  static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Generic(PyObject *o, PyObject* j) {
32081  PyObject *r;
32082  if (!j) return NULL;
32083  r = PyObject_GetItem(o, j);
32084  Py_DECREF(j);
32085  return r;
32086 }
32087 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_List_Fast(PyObject *o, Py_ssize_t i,
32088  CYTHON_NCP_UNUSED int wraparound,
32089  CYTHON_NCP_UNUSED int boundscheck) {
32090 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
32091  if (wraparound & unlikely(i < 0)) i += PyList_GET_SIZE(o);
32092  if ((!boundscheck) || likely((0 <= i) & (i < PyList_GET_SIZE(o)))) {
32093  PyObject *r = PyList_GET_ITEM(o, i);
32094  Py_INCREF(r);
32095  return r;
32096  }
32097  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
32098 #else
32099  return PySequence_GetItem(o, i);
32100 #endif
32101 }
32102 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Tuple_Fast(PyObject *o, Py_ssize_t i,
32103  CYTHON_NCP_UNUSED int wraparound,
32104  CYTHON_NCP_UNUSED int boundscheck) {
32105 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
32106  if (wraparound & unlikely(i < 0)) i += PyTuple_GET_SIZE(o);
32107  if ((!boundscheck) || likely((0 <= i) & (i < PyTuple_GET_SIZE(o)))) {
32108  PyObject *r = PyTuple_GET_ITEM(o, i);
32109  Py_INCREF(r);
32110  return r;
32111  }
32112  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
32113 #else
32114  return PySequence_GetItem(o, i);
32115 #endif
32116 }
32117 static CYTHON_INLINE PyObject *__Pyx_GetItemInt_Fast(PyObject *o, Py_ssize_t i, int is_list,
32118  CYTHON_NCP_UNUSED int wraparound,
32119  CYTHON_NCP_UNUSED int boundscheck) {
32120 #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS && CYTHON_USE_TYPE_SLOTS
32121  if (is_list || PyList_CheckExact(o)) {
32122  Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyList_GET_SIZE(o);
32123  if ((!boundscheck) || (likely((n >= 0) & (n < PyList_GET_SIZE(o))))) {
32124  PyObject *r = PyList_GET_ITEM(o, n);
32125  Py_INCREF(r);
32126  return r;
32127  }
32128  }
32129  else if (PyTuple_CheckExact(o)) {
32130  Py_ssize_t n = ((!wraparound) | likely(i >= 0)) ? i : i + PyTuple_GET_SIZE(o);
32131  if ((!boundscheck) || likely((n >= 0) & (n < PyTuple_GET_SIZE(o)))) {
32132  PyObject *r = PyTuple_GET_ITEM(o, n);
32133  Py_INCREF(r);
32134  return r;
32135  }
32136  } else {
32137  PySequenceMethods *m = Py_TYPE(o)->tp_as_sequence;
32138  if (likely(m && m->sq_item)) {
32139  if (wraparound && unlikely(i < 0) && likely(m->sq_length)) {
32140  Py_ssize_t l = m->sq_length(o);
32141  if (likely(l >= 0)) {
32142  i += l;
32143  } else {
32144  if (!PyErr_ExceptionMatches(PyExc_OverflowError))
32145  return NULL;
32146  PyErr_Clear();
32147  }
32148  }
32149  return m->sq_item(o, i);
32150  }
32151  }
32152 #else
32153  if (is_list || PySequence_Check(o)) {
32154  return PySequence_GetItem(o, i);
32155  }
32156 #endif
32157  return __Pyx_GetItemInt_Generic(o, PyInt_FromSsize_t(i));
32158 }
32159 
32160 /* SliceObject */
32161  static CYTHON_INLINE PyObject* __Pyx_PyObject_GetSlice(PyObject* obj,
32162  Py_ssize_t cstart, Py_ssize_t cstop,
32163  PyObject** _py_start, PyObject** _py_stop, PyObject** _py_slice,
32164  int has_cstart, int has_cstop, CYTHON_UNUSED int wraparound) {
32165 #if CYTHON_USE_TYPE_SLOTS
32166  PyMappingMethods* mp;
32167 #if PY_MAJOR_VERSION < 3
32168  PySequenceMethods* ms = Py_TYPE(obj)->tp_as_sequence;
32169  if (likely(ms && ms->sq_slice)) {
32170  if (!has_cstart) {
32171  if (_py_start && (*_py_start != Py_None)) {
32172  cstart = __Pyx_PyIndex_AsSsize_t(*_py_start);
32173  if ((cstart == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
32174  } else
32175  cstart = 0;
32176  }
32177  if (!has_cstop) {
32178  if (_py_stop && (*_py_stop != Py_None)) {
32179  cstop = __Pyx_PyIndex_AsSsize_t(*_py_stop);
32180  if ((cstop == (Py_ssize_t)-1) && PyErr_Occurred()) goto bad;
32181  } else
32182  cstop = PY_SSIZE_T_MAX;
32183  }
32184  if (wraparound && unlikely((cstart < 0) | (cstop < 0)) && likely(ms->sq_length)) {
32185  Py_ssize_t l = ms->sq_length(obj);
32186  if (likely(l >= 0)) {
32187  if (cstop < 0) {
32188  cstop += l;
32189  if (cstop < 0) cstop = 0;
32190  }
32191  if (cstart < 0) {
32192  cstart += l;
32193  if (cstart < 0) cstart = 0;
32194  }
32195  } else {
32196  if (!PyErr_ExceptionMatches(PyExc_OverflowError))
32197  goto bad;
32198  PyErr_Clear();
32199  }
32200  }
32201  return ms->sq_slice(obj, cstart, cstop);
32202  }
32203 #endif
32204  mp = Py_TYPE(obj)->tp_as_mapping;
32205  if (likely(mp && mp->mp_subscript))
32206 #endif
32207  {
32208  PyObject* result;
32209  PyObject *py_slice, *py_start, *py_stop;
32210  if (_py_slice) {
32211  py_slice = *_py_slice;
32212  } else {
32213  PyObject* owned_start = NULL;
32214  PyObject* owned_stop = NULL;
32215  if (_py_start) {
32216  py_start = *_py_start;
32217  } else {
32218  if (has_cstart) {
32219  owned_start = py_start = PyInt_FromSsize_t(cstart);
32220  if (unlikely(!py_start)) goto bad;
32221  } else
32222  py_start = Py_None;
32223  }
32224  if (_py_stop) {
32225  py_stop = *_py_stop;
32226  } else {
32227  if (has_cstop) {
32228  owned_stop = py_stop = PyInt_FromSsize_t(cstop);
32229  if (unlikely(!py_stop)) {
32230  Py_XDECREF(owned_start);
32231  goto bad;
32232  }
32233  } else
32234  py_stop = Py_None;
32235  }
32236  py_slice = PySlice_New(py_start, py_stop, Py_None);
32237  Py_XDECREF(owned_start);
32238  Py_XDECREF(owned_stop);
32239  if (unlikely(!py_slice)) goto bad;
32240  }
32241 #if CYTHON_USE_TYPE_SLOTS
32242  result = mp->mp_subscript(obj, py_slice);
32243 #else
32244  result = PyObject_GetItem(obj, py_slice);
32245 #endif
32246  if (!_py_slice) {
32247  Py_DECREF(py_slice);
32248  }
32249  return result;
32250  }
32251  PyErr_Format(PyExc_TypeError,
32252  "'%.200s' object is unsliceable", Py_TYPE(obj)->tp_name);
32253 bad:
32254  return NULL;
32255 }
32256 
32257 /* Import */
32258  static PyObject *__Pyx_Import(PyObject *name, PyObject *from_list, int level) {
32259  PyObject *empty_list = 0;
32260  PyObject *module = 0;
32261  PyObject *global_dict = 0;
32262  PyObject *empty_dict = 0;
32263  PyObject *list;
32264  #if PY_VERSION_HEX < 0x03030000
32265  PyObject *py_import;
32266  py_import = __Pyx_PyObject_GetAttrStr(__pyx_b, __pyx_n_s_import);
32267  if (!py_import)
32268  goto bad;
32269  #endif
32270  if (from_list)
32271  list = from_list;
32272  else {
32273  empty_list = PyList_New(0);
32274  if (!empty_list)
32275  goto bad;
32276  list = empty_list;
32277  }
32278  global_dict = PyModule_GetDict(__pyx_m);
32279  if (!global_dict)
32280  goto bad;
32281  empty_dict = PyDict_New();
32282  if (!empty_dict)
32283  goto bad;
32284  {
32285  #if PY_MAJOR_VERSION >= 3
32286  if (level == -1) {
32287  if (strchr(__Pyx_MODULE_NAME, '.')) {
32288  #if PY_VERSION_HEX < 0x03030000
32289  PyObject *py_level = PyInt_FromLong(1);
32290  if (!py_level)
32291  goto bad;
32292  module = PyObject_CallFunctionObjArgs(py_import,
32293  name, global_dict, empty_dict, list, py_level, NULL);
32294  Py_DECREF(py_level);
32295  #else
32296  module = PyImport_ImportModuleLevelObject(
32297  name, global_dict, empty_dict, list, 1);
32298  #endif
32299  if (!module) {
32300  if (!PyErr_ExceptionMatches(PyExc_ImportError))
32301  goto bad;
32302  PyErr_Clear();
32303  }
32304  }
32305  level = 0;
32306  }
32307  #endif
32308  if (!module) {
32309  #if PY_VERSION_HEX < 0x03030000
32310  PyObject *py_level = PyInt_FromLong(level);
32311  if (!py_level)
32312  goto bad;
32313  module = PyObject_CallFunctionObjArgs(py_import,
32314  name, global_dict, empty_dict, list, py_level, NULL);
32315  Py_DECREF(py_level);
32316  #else
32317  module = PyImport_ImportModuleLevelObject(
32318  name, global_dict, empty_dict, list, level);
32319  #endif
32320  }
32321  }
32322 bad:
32323  #if PY_VERSION_HEX < 0x03030000
32324  Py_XDECREF(py_import);
32325  #endif
32326  Py_XDECREF(empty_list);
32327  Py_XDECREF(empty_dict);
32328  return module;
32329 }
32330 
32331 /* ImportFrom */
32332  static PyObject* __Pyx_ImportFrom(PyObject* module, PyObject* name) {
32333  PyObject* value = __Pyx_PyObject_GetAttrStr(module, name);
32334  if (unlikely(!value) && PyErr_ExceptionMatches(PyExc_AttributeError)) {
32335  PyErr_Format(PyExc_ImportError,
32336  #if PY_MAJOR_VERSION < 3
32337  "cannot import name %.230s", PyString_AS_STRING(name));
32338  #else
32339  "cannot import name %S", name);
32340  #endif
32341  }
32342  return value;
32343 }
32344 
32345 /* BytesEquals */
32346  static CYTHON_INLINE int __Pyx_PyBytes_Equals(PyObject* s1, PyObject* s2, int equals) {
32347 #if CYTHON_COMPILING_IN_PYPY
32348  return PyObject_RichCompareBool(s1, s2, equals);
32349 #else
32350  if (s1 == s2) {
32351  return (equals == Py_EQ);
32352  } else if (PyBytes_CheckExact(s1) & PyBytes_CheckExact(s2)) {
32353  const char *ps1, *ps2;
32354  Py_ssize_t length = PyBytes_GET_SIZE(s1);
32355  if (length != PyBytes_GET_SIZE(s2))
32356  return (equals == Py_NE);
32357  ps1 = PyBytes_AS_STRING(s1);
32358  ps2 = PyBytes_AS_STRING(s2);
32359  if (ps1[0] != ps2[0]) {
32360  return (equals == Py_NE);
32361  } else if (length == 1) {
32362  return (equals == Py_EQ);
32363  } else {
32364  int result = memcmp(ps1, ps2, (size_t)length);
32365  return (equals == Py_EQ) ? (result == 0) : (result != 0);
32366  }
32367  } else if ((s1 == Py_None) & PyBytes_CheckExact(s2)) {
32368  return (equals == Py_NE);
32369  } else if ((s2 == Py_None) & PyBytes_CheckExact(s1)) {
32370  return (equals == Py_NE);
32371  } else {
32372  int result;
32373  PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
32374  if (!py_result)
32375  return -1;
32376  result = __Pyx_PyObject_IsTrue(py_result);
32377  Py_DECREF(py_result);
32378  return result;
32379  }
32380 #endif
32381 }
32382 
32383 /* UnicodeEquals */
32384  static CYTHON_INLINE int __Pyx_PyUnicode_Equals(PyObject* s1, PyObject* s2, int equals) {
32385 #if CYTHON_COMPILING_IN_PYPY
32386  return PyObject_RichCompareBool(s1, s2, equals);
32387 #else
32388 #if PY_MAJOR_VERSION < 3
32389  PyObject* owned_ref = NULL;
32390 #endif
32391  int s1_is_unicode, s2_is_unicode;
32392  if (s1 == s2) {
32393  goto return_eq;
32394  }
32395  s1_is_unicode = PyUnicode_CheckExact(s1);
32396  s2_is_unicode = PyUnicode_CheckExact(s2);
32397 #if PY_MAJOR_VERSION < 3
32398  if ((s1_is_unicode & (!s2_is_unicode)) && PyString_CheckExact(s2)) {
32399  owned_ref = PyUnicode_FromObject(s2);
32400  if (unlikely(!owned_ref))
32401  return -1;
32402  s2 = owned_ref;
32403  s2_is_unicode = 1;
32404  } else if ((s2_is_unicode & (!s1_is_unicode)) && PyString_CheckExact(s1)) {
32405  owned_ref = PyUnicode_FromObject(s1);
32406  if (unlikely(!owned_ref))
32407  return -1;
32408  s1 = owned_ref;
32409  s1_is_unicode = 1;
32410  } else if (((!s2_is_unicode) & (!s1_is_unicode))) {
32411  return __Pyx_PyBytes_Equals(s1, s2, equals);
32412  }
32413 #endif
32414  if (s1_is_unicode & s2_is_unicode) {
32415  Py_ssize_t length;
32416  int kind;
32417  void *data1, *data2;
32418  if (unlikely(__Pyx_PyUnicode_READY(s1) < 0) || unlikely(__Pyx_PyUnicode_READY(s2) < 0))
32419  return -1;
32420  length = __Pyx_PyUnicode_GET_LENGTH(s1);
32421  if (length != __Pyx_PyUnicode_GET_LENGTH(s2)) {
32422  goto return_ne;
32423  }
32424  kind = __Pyx_PyUnicode_KIND(s1);
32425  if (kind != __Pyx_PyUnicode_KIND(s2)) {
32426  goto return_ne;
32427  }
32428  data1 = __Pyx_PyUnicode_DATA(s1);
32429  data2 = __Pyx_PyUnicode_DATA(s2);
32430  if (__Pyx_PyUnicode_READ(kind, data1, 0) != __Pyx_PyUnicode_READ(kind, data2, 0)) {
32431  goto return_ne;
32432  } else if (length == 1) {
32433  goto return_eq;
32434  } else {
32435  int result = memcmp(data1, data2, (size_t)(length * kind));
32436  #if PY_MAJOR_VERSION < 3
32437  Py_XDECREF(owned_ref);
32438  #endif
32439  return (equals == Py_EQ) ? (result == 0) : (result != 0);
32440  }
32441  } else if ((s1 == Py_None) & s2_is_unicode) {
32442  goto return_ne;
32443  } else if ((s2 == Py_None) & s1_is_unicode) {
32444  goto return_ne;
32445  } else {
32446  int result;
32447  PyObject* py_result = PyObject_RichCompare(s1, s2, equals);
32448  if (!py_result)
32449  return -1;
32450  result = __Pyx_PyObject_IsTrue(py_result);
32451  Py_DECREF(py_result);
32452  return result;
32453  }
32454 return_eq:
32455  #if PY_MAJOR_VERSION < 3
32456  Py_XDECREF(owned_ref);
32457  #endif
32458  return (equals == Py_EQ);
32459 return_ne:
32460  #if PY_MAJOR_VERSION < 3
32461  Py_XDECREF(owned_ref);
32462  #endif
32463  return (equals == Py_NE);
32464 #endif
32465 }
32466 
32467 /* PyIntBinop */
32468  #if !CYTHON_COMPILING_IN_PYPY
32469 static PyObject* __Pyx_PyInt_EqObjC(PyObject *op1, PyObject *op2, CYTHON_UNUSED long intval, CYTHON_UNUSED int inplace) {
32470  if (op1 == op2) {
32471  Py_RETURN_TRUE;
32472  }
32473  #if PY_MAJOR_VERSION < 3
32474  if (likely(PyInt_CheckExact(op1))) {
32475  const long b = intval;
32476  long a = PyInt_AS_LONG(op1);
32477  if (a == b) {
32478  Py_RETURN_TRUE;
32479  } else {
32480  Py_RETURN_FALSE;
32481  }
32482  }
32483  #endif
32484  #if CYTHON_USE_PYLONG_INTERNALS
32485  if (likely(PyLong_CheckExact(op1))) {
32486  const long b = intval;
32487  long a;
32488  const digit* digits = ((PyLongObject*)op1)->ob_digit;
32489  const Py_ssize_t size = Py_SIZE(op1);
32490  if (likely(__Pyx_sst_abs(size) <= 1)) {
32491  a = likely(size) ? digits[0] : 0;
32492  if (size == -1) a = -a;
32493  } else {
32494  switch (size) {
32495  case -2:
32496  if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
32497  a = -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
32498  break;
32499  }
32500  case 2:
32501  if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
32502  a = (long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
32503  break;
32504  }
32505  case -3:
32506  if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
32507  a = -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
32508  break;
32509  }
32510  case 3:
32511  if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
32512  a = (long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
32513  break;
32514  }
32515  case -4:
32516  if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
32517  a = -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
32518  break;
32519  }
32520  case 4:
32521  if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
32522  a = (long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0]));
32523  break;
32524  }
32525  #if PyLong_SHIFT < 30 && PyLong_SHIFT != 15
32526  default: return PyLong_Type.tp_richcompare(op1, op2, Py_EQ);
32527  #else
32528  default: Py_RETURN_FALSE;
32529  #endif
32530  }
32531  }
32532  if (a == b) {
32533  Py_RETURN_TRUE;
32534  } else {
32535  Py_RETURN_FALSE;
32536  }
32537  }
32538  #endif
32539  if (PyFloat_CheckExact(op1)) {
32540  const long b = intval;
32541  double a = PyFloat_AS_DOUBLE(op1);
32542  if ((double)a == (double)b) {
32543  Py_RETURN_TRUE;
32544  } else {
32545  Py_RETURN_FALSE;
32546  }
32547  }
32548  return PyObject_RichCompare(op1, op2, Py_EQ);
32549 }
32550 #endif
32551 
32552 /* PyObjectCallMethod0 */
32553  static PyObject* __Pyx_PyObject_CallMethod0(PyObject* obj, PyObject* method_name) {
32554  PyObject *method, *result = NULL;
32555  method = __Pyx_PyObject_GetAttrStr(obj, method_name);
32556  if (unlikely(!method)) goto bad;
32557 #if CYTHON_UNPACK_METHODS
32558  if (likely(PyMethod_Check(method))) {
32559  PyObject *self = PyMethod_GET_SELF(method);
32560  if (likely(self)) {
32561  PyObject *function = PyMethod_GET_FUNCTION(method);
32562  result = __Pyx_PyObject_CallOneArg(function, self);
32563  Py_DECREF(method);
32564  return result;
32565  }
32566  }
32567 #endif
32568  result = __Pyx_PyObject_CallNoArg(method);
32569  Py_DECREF(method);
32570 bad:
32571  return result;
32572 }
32573 
32574 /* RaiseNoneIterError */
32575  static CYTHON_INLINE void __Pyx_RaiseNoneNotIterableError(void) {
32576  PyErr_SetString(PyExc_TypeError, "'NoneType' object is not iterable");
32577 }
32578 
32579 /* UnpackTupleError */
32580  static void __Pyx_UnpackTupleError(PyObject *t, Py_ssize_t index) {
32581  if (t == Py_None) {
32582  __Pyx_RaiseNoneNotIterableError();
32583  } else if (PyTuple_GET_SIZE(t) < index) {
32584  __Pyx_RaiseNeedMoreValuesError(PyTuple_GET_SIZE(t));
32585  } else {
32586  __Pyx_RaiseTooManyValuesError(index);
32587  }
32588 }
32589 
32590 /* UnpackTuple2 */
32591  static CYTHON_INLINE int __Pyx_unpack_tuple2(PyObject* tuple, PyObject** pvalue1, PyObject** pvalue2,
32592  int is_tuple, int has_known_size, int decref_tuple) {
32593  Py_ssize_t index;
32594  PyObject *value1 = NULL, *value2 = NULL, *iter = NULL;
32595  if (!is_tuple && unlikely(!PyTuple_Check(tuple))) {
32596  iternextfunc iternext;
32597  iter = PyObject_GetIter(tuple);
32598  if (unlikely(!iter)) goto bad;
32599  if (decref_tuple) { Py_DECREF(tuple); tuple = NULL; }
32600  iternext = Py_TYPE(iter)->tp_iternext;
32601  value1 = iternext(iter); if (unlikely(!value1)) { index = 0; goto unpacking_failed; }
32602  value2 = iternext(iter); if (unlikely(!value2)) { index = 1; goto unpacking_failed; }
32603  if (!has_known_size && unlikely(__Pyx_IternextUnpackEndCheck(iternext(iter), 2))) goto bad;
32604  Py_DECREF(iter);
32605  } else {
32606  if (!has_known_size && unlikely(PyTuple_GET_SIZE(tuple) != 2)) {
32607  __Pyx_UnpackTupleError(tuple, 2);
32608  goto bad;
32609  }
32610 #if CYTHON_COMPILING_IN_PYPY
32611  value1 = PySequence_ITEM(tuple, 0);
32612  if (unlikely(!value1)) goto bad;
32613  value2 = PySequence_ITEM(tuple, 1);
32614  if (unlikely(!value2)) goto bad;
32615 #else
32616  value1 = PyTuple_GET_ITEM(tuple, 0);
32617  value2 = PyTuple_GET_ITEM(tuple, 1);
32618  Py_INCREF(value1);
32619  Py_INCREF(value2);
32620 #endif
32621  if (decref_tuple) { Py_DECREF(tuple); }
32622  }
32623  *pvalue1 = value1;
32624  *pvalue2 = value2;
32625  return 0;
32626 unpacking_failed:
32627  if (!has_known_size && __Pyx_IterFinish() == 0)
32628  __Pyx_RaiseNeedMoreValuesError(index);
32629 bad:
32630  Py_XDECREF(iter);
32631  Py_XDECREF(value1);
32632  Py_XDECREF(value2);
32633  if (decref_tuple) { Py_XDECREF(tuple); }
32634  return -1;
32635 }
32636 
32637 /* dict_iter */
32638  static CYTHON_INLINE PyObject* __Pyx_dict_iterator(PyObject* iterable, int is_dict, PyObject* method_name,
32639  Py_ssize_t* p_orig_length, int* p_source_is_dict) {
32640  is_dict = is_dict || likely(PyDict_CheckExact(iterable));
32641  *p_source_is_dict = is_dict;
32642 #if !CYTHON_COMPILING_IN_PYPY
32643  if (is_dict) {
32644  *p_orig_length = PyDict_Size(iterable);
32645  Py_INCREF(iterable);
32646  return iterable;
32647  }
32648 #endif
32649  *p_orig_length = 0;
32650  if (method_name) {
32651  PyObject* iter;
32652  iterable = __Pyx_PyObject_CallMethod0(iterable, method_name);
32653  if (!iterable)
32654  return NULL;
32655 #if !CYTHON_COMPILING_IN_PYPY
32656  if (PyTuple_CheckExact(iterable) || PyList_CheckExact(iterable))
32657  return iterable;
32658 #endif
32659  iter = PyObject_GetIter(iterable);
32660  Py_DECREF(iterable);
32661  return iter;
32662  }
32663  return PyObject_GetIter(iterable);
32664 }
32665 static CYTHON_INLINE int __Pyx_dict_iter_next(
32666  PyObject* iter_obj, CYTHON_NCP_UNUSED Py_ssize_t orig_length, CYTHON_NCP_UNUSED Py_ssize_t* ppos,
32667  PyObject** pkey, PyObject** pvalue, PyObject** pitem, int source_is_dict) {
32668  PyObject* next_item;
32669 #if !CYTHON_COMPILING_IN_PYPY
32670  if (source_is_dict) {
32671  PyObject *key, *value;
32672  if (unlikely(orig_length != PyDict_Size(iter_obj))) {
32673  PyErr_SetString(PyExc_RuntimeError, "dictionary changed size during iteration");
32674  return -1;
32675  }
32676  if (unlikely(!PyDict_Next(iter_obj, ppos, &key, &value))) {
32677  return 0;
32678  }
32679  if (pitem) {
32680  PyObject* tuple = PyTuple_New(2);
32681  if (unlikely(!tuple)) {
32682  return -1;
32683  }
32684  Py_INCREF(key);
32685  Py_INCREF(value);
32686  PyTuple_SET_ITEM(tuple, 0, key);
32687  PyTuple_SET_ITEM(tuple, 1, value);
32688  *pitem = tuple;
32689  } else {
32690  if (pkey) {
32691  Py_INCREF(key);
32692  *pkey = key;
32693  }
32694  if (pvalue) {
32695  Py_INCREF(value);
32696  *pvalue = value;
32697  }
32698  }
32699  return 1;
32700  } else if (PyTuple_CheckExact(iter_obj)) {
32701  Py_ssize_t pos = *ppos;
32702  if (unlikely(pos >= PyTuple_GET_SIZE(iter_obj))) return 0;
32703  *ppos = pos + 1;
32704  next_item = PyTuple_GET_ITEM(iter_obj, pos);
32705  Py_INCREF(next_item);
32706  } else if (PyList_CheckExact(iter_obj)) {
32707  Py_ssize_t pos = *ppos;
32708  if (unlikely(pos >= PyList_GET_SIZE(iter_obj))) return 0;
32709  *ppos = pos + 1;
32710  next_item = PyList_GET_ITEM(iter_obj, pos);
32711  Py_INCREF(next_item);
32712  } else
32713 #endif
32714  {
32715  next_item = PyIter_Next(iter_obj);
32716  if (unlikely(!next_item)) {
32717  return __Pyx_IterFinish();
32718  }
32719  }
32720  if (pitem) {
32721  *pitem = next_item;
32722  } else if (pkey && pvalue) {
32723  if (__Pyx_unpack_tuple2(next_item, pkey, pvalue, source_is_dict, source_is_dict, 1))
32724  return -1;
32725  } else if (pkey) {
32726  *pkey = next_item;
32727  } else {
32728  *pvalue = next_item;
32729  }
32730  return 1;
32731 }
32732 
32733 /* PyErrFetchRestore */
32734  #if CYTHON_FAST_THREAD_STATE
32735 static CYTHON_INLINE void __Pyx_ErrRestoreInState(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
32736  PyObject *tmp_type, *tmp_value, *tmp_tb;
32737  tmp_type = tstate->curexc_type;
32738  tmp_value = tstate->curexc_value;
32739  tmp_tb = tstate->curexc_traceback;
32740  tstate->curexc_type = type;
32741  tstate->curexc_value = value;
32742  tstate->curexc_traceback = tb;
32743  Py_XDECREF(tmp_type);
32744  Py_XDECREF(tmp_value);
32745  Py_XDECREF(tmp_tb);
32746 }
32747 static CYTHON_INLINE void __Pyx_ErrFetchInState(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
32748  *type = tstate->curexc_type;
32749  *value = tstate->curexc_value;
32750  *tb = tstate->curexc_traceback;
32751  tstate->curexc_type = 0;
32752  tstate->curexc_value = 0;
32753  tstate->curexc_traceback = 0;
32754 }
32755 #endif
32756 
32757 /* RaiseException */
32758  #if PY_MAJOR_VERSION < 3
32759 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb,
32760  CYTHON_UNUSED PyObject *cause) {
32761  __Pyx_PyThreadState_declare
32762  Py_XINCREF(type);
32763  if (!value || value == Py_None)
32764  value = NULL;
32765  else
32766  Py_INCREF(value);
32767  if (!tb || tb == Py_None)
32768  tb = NULL;
32769  else {
32770  Py_INCREF(tb);
32771  if (!PyTraceBack_Check(tb)) {
32772  PyErr_SetString(PyExc_TypeError,
32773  "raise: arg 3 must be a traceback or None");
32774  goto raise_error;
32775  }
32776  }
32777  if (PyType_Check(type)) {
32778 #if CYTHON_COMPILING_IN_PYPY
32779  if (!value) {
32780  Py_INCREF(Py_None);
32781  value = Py_None;
32782  }
32783 #endif
32784  PyErr_NormalizeException(&type, &value, &tb);
32785  } else {
32786  if (value) {
32787  PyErr_SetString(PyExc_TypeError,
32788  "instance exception may not have a separate value");
32789  goto raise_error;
32790  }
32791  value = type;
32792  type = (PyObject*) Py_TYPE(type);
32793  Py_INCREF(type);
32794  if (!PyType_IsSubtype((PyTypeObject *)type, (PyTypeObject *)PyExc_BaseException)) {
32795  PyErr_SetString(PyExc_TypeError,
32796  "raise: exception class must be a subclass of BaseException");
32797  goto raise_error;
32798  }
32799  }
32800  __Pyx_PyThreadState_assign
32801  __Pyx_ErrRestore(type, value, tb);
32802  return;
32803 raise_error:
32804  Py_XDECREF(value);
32805  Py_XDECREF(type);
32806  Py_XDECREF(tb);
32807  return;
32808 }
32809 #else
32810 static void __Pyx_Raise(PyObject *type, PyObject *value, PyObject *tb, PyObject *cause) {
32811  PyObject* owned_instance = NULL;
32812  if (tb == Py_None) {
32813  tb = 0;
32814  } else if (tb && !PyTraceBack_Check(tb)) {
32815  PyErr_SetString(PyExc_TypeError,
32816  "raise: arg 3 must be a traceback or None");
32817  goto bad;
32818  }
32819  if (value == Py_None)
32820  value = 0;
32821  if (PyExceptionInstance_Check(type)) {
32822  if (value) {
32823  PyErr_SetString(PyExc_TypeError,
32824  "instance exception may not have a separate value");
32825  goto bad;
32826  }
32827  value = type;
32828  type = (PyObject*) Py_TYPE(value);
32829  } else if (PyExceptionClass_Check(type)) {
32830  PyObject *instance_class = NULL;
32831  if (value && PyExceptionInstance_Check(value)) {
32832  instance_class = (PyObject*) Py_TYPE(value);
32833  if (instance_class != type) {
32834  int is_subclass = PyObject_IsSubclass(instance_class, type);
32835  if (!is_subclass) {
32836  instance_class = NULL;
32837  } else if (unlikely(is_subclass == -1)) {
32838  goto bad;
32839  } else {
32840  type = instance_class;
32841  }
32842  }
32843  }
32844  if (!instance_class) {
32845  PyObject *args;
32846  if (!value)
32847  args = PyTuple_New(0);
32848  else if (PyTuple_Check(value)) {
32849  Py_INCREF(value);
32850  args = value;
32851  } else
32852  args = PyTuple_Pack(1, value);
32853  if (!args)
32854  goto bad;
32855  owned_instance = PyObject_Call(type, args, NULL);
32856  Py_DECREF(args);
32857  if (!owned_instance)
32858  goto bad;
32859  value = owned_instance;
32860  if (!PyExceptionInstance_Check(value)) {
32861  PyErr_Format(PyExc_TypeError,
32862  "calling %R should have returned an instance of "
32863  "BaseException, not %R",
32864  type, Py_TYPE(value));
32865  goto bad;
32866  }
32867  }
32868  } else {
32869  PyErr_SetString(PyExc_TypeError,
32870  "raise: exception class must be a subclass of BaseException");
32871  goto bad;
32872  }
32873 #if PY_VERSION_HEX >= 0x03030000
32874  if (cause) {
32875 #else
32876  if (cause && cause != Py_None) {
32877 #endif
32878  PyObject *fixed_cause;
32879  if (cause == Py_None) {
32880  fixed_cause = NULL;
32881  } else if (PyExceptionClass_Check(cause)) {
32882  fixed_cause = PyObject_CallObject(cause, NULL);
32883  if (fixed_cause == NULL)
32884  goto bad;
32885  } else if (PyExceptionInstance_Check(cause)) {
32886  fixed_cause = cause;
32887  Py_INCREF(fixed_cause);
32888  } else {
32889  PyErr_SetString(PyExc_TypeError,
32890  "exception causes must derive from "
32891  "BaseException");
32892  goto bad;
32893  }
32894  PyException_SetCause(value, fixed_cause);
32895  }
32896  PyErr_SetObject(type, value);
32897  if (tb) {
32898 #if CYTHON_COMPILING_IN_PYPY
32899  PyObject *tmp_type, *tmp_value, *tmp_tb;
32900  PyErr_Fetch(&tmp_type, &tmp_value, &tmp_tb);
32901  Py_INCREF(tb);
32902  PyErr_Restore(tmp_type, tmp_value, tb);
32903  Py_XDECREF(tmp_tb);
32904 #else
32905  PyThreadState *tstate = PyThreadState_GET();
32906  PyObject* tmp_tb = tstate->curexc_traceback;
32907  if (tb != tmp_tb) {
32908  Py_INCREF(tb);
32909  tstate->curexc_traceback = tb;
32910  Py_XDECREF(tmp_tb);
32911  }
32912 #endif
32913  }
32914 bad:
32915  Py_XDECREF(owned_instance);
32916  return;
32917 }
32918 #endif
32919 
32920 /* SaveResetException */
32921  #if CYTHON_FAST_THREAD_STATE
32922 static CYTHON_INLINE void __Pyx__ExceptionSave(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
32923  *type = tstate->exc_type;
32924  *value = tstate->exc_value;
32925  *tb = tstate->exc_traceback;
32926  Py_XINCREF(*type);
32927  Py_XINCREF(*value);
32928  Py_XINCREF(*tb);
32929 }
32930 static CYTHON_INLINE void __Pyx__ExceptionReset(PyThreadState *tstate, PyObject *type, PyObject *value, PyObject *tb) {
32931  PyObject *tmp_type, *tmp_value, *tmp_tb;
32932  tmp_type = tstate->exc_type;
32933  tmp_value = tstate->exc_value;
32934  tmp_tb = tstate->exc_traceback;
32935  tstate->exc_type = type;
32936  tstate->exc_value = value;
32937  tstate->exc_traceback = tb;
32938  Py_XDECREF(tmp_type);
32939  Py_XDECREF(tmp_value);
32940  Py_XDECREF(tmp_tb);
32941 }
32942 #endif
32943 
32944 /* PyErrExceptionMatches */
32945  #if CYTHON_FAST_THREAD_STATE
32946 static CYTHON_INLINE int __Pyx_PyErr_ExceptionMatchesInState(PyThreadState* tstate, PyObject* err) {
32947  PyObject *exc_type = tstate->curexc_type;
32948  if (exc_type == err) return 1;
32949  if (unlikely(!exc_type)) return 0;
32950  return PyErr_GivenExceptionMatches(exc_type, err);
32951 }
32952 #endif
32953 
32954 /* GetException */
32955  #if CYTHON_FAST_THREAD_STATE
32956 static int __Pyx__GetException(PyThreadState *tstate, PyObject **type, PyObject **value, PyObject **tb) {
32957 #else
32958 static int __Pyx_GetException(PyObject **type, PyObject **value, PyObject **tb) {
32959 #endif
32960  PyObject *local_type, *local_value, *local_tb;
32961 #if CYTHON_FAST_THREAD_STATE
32962  PyObject *tmp_type, *tmp_value, *tmp_tb;
32963  local_type = tstate->curexc_type;
32964  local_value = tstate->curexc_value;
32965  local_tb = tstate->curexc_traceback;
32966  tstate->curexc_type = 0;
32967  tstate->curexc_value = 0;
32968  tstate->curexc_traceback = 0;
32969 #else
32970  PyErr_Fetch(&local_type, &local_value, &local_tb);
32971 #endif
32972  PyErr_NormalizeException(&local_type, &local_value, &local_tb);
32973 #if CYTHON_FAST_THREAD_STATE
32974  if (unlikely(tstate->curexc_type))
32975 #else
32976  if (unlikely(PyErr_Occurred()))
32977 #endif
32978  goto bad;
32979  #if PY_MAJOR_VERSION >= 3
32980  if (local_tb) {
32981  if (unlikely(PyException_SetTraceback(local_value, local_tb) < 0))
32982  goto bad;
32983  }
32984  #endif
32985  Py_XINCREF(local_tb);
32986  Py_XINCREF(local_type);
32987  Py_XINCREF(local_value);
32988  *type = local_type;
32989  *value = local_value;
32990  *tb = local_tb;
32991 #if CYTHON_FAST_THREAD_STATE
32992  tmp_type = tstate->exc_type;
32993  tmp_value = tstate->exc_value;
32994  tmp_tb = tstate->exc_traceback;
32995  tstate->exc_type = local_type;
32996  tstate->exc_value = local_value;
32997  tstate->exc_traceback = local_tb;
32998  Py_XDECREF(tmp_type);
32999  Py_XDECREF(tmp_value);
33000  Py_XDECREF(tmp_tb);
33001 #else
33002  PyErr_SetExcInfo(local_type, local_value, local_tb);
33003 #endif
33004  return 0;
33005 bad:
33006  *type = 0;
33007  *value = 0;
33008  *tb = 0;
33009  Py_XDECREF(local_type);
33010  Py_XDECREF(local_value);
33011  Py_XDECREF(local_tb);
33012  return -1;
33013 }
33014 
33015 /* CalculateMetaclass */
33016  static PyObject *__Pyx_CalculateMetaclass(PyTypeObject *metaclass, PyObject *bases) {
33017  Py_ssize_t i, nbases = PyTuple_GET_SIZE(bases);
33018  for (i=0; i < nbases; i++) {
33019  PyTypeObject *tmptype;
33020  PyObject *tmp = PyTuple_GET_ITEM(bases, i);
33021  tmptype = Py_TYPE(tmp);
33022 #if PY_MAJOR_VERSION < 3
33023  if (tmptype == &PyClass_Type)
33024  continue;
33025 #endif
33026  if (!metaclass) {
33027  metaclass = tmptype;
33028  continue;
33029  }
33030  if (PyType_IsSubtype(metaclass, tmptype))
33031  continue;
33032  if (PyType_IsSubtype(tmptype, metaclass)) {
33033  metaclass = tmptype;
33034  continue;
33035  }
33036  PyErr_SetString(PyExc_TypeError,
33037  "metaclass conflict: "
33038  "the metaclass of a derived class "
33039  "must be a (non-strict) subclass "
33040  "of the metaclasses of all its bases");
33041  return NULL;
33042  }
33043  if (!metaclass) {
33044 #if PY_MAJOR_VERSION < 3
33045  metaclass = &PyClass_Type;
33046 #else
33047  metaclass = &PyType_Type;
33048 #endif
33049  }
33050  Py_INCREF((PyObject*) metaclass);
33051  return (PyObject*) metaclass;
33052 }
33053 
33054 /* FetchCommonType */
33055  static PyTypeObject* __Pyx_FetchCommonType(PyTypeObject* type) {
33056  PyObject* fake_module;
33057  PyTypeObject* cached_type = NULL;
33058  fake_module = PyImport_AddModule((char*) "_cython_" CYTHON_ABI);
33059  if (!fake_module) return NULL;
33060  Py_INCREF(fake_module);
33061  cached_type = (PyTypeObject*) PyObject_GetAttrString(fake_module, type->tp_name);
33062  if (cached_type) {
33063  if (!PyType_Check((PyObject*)cached_type)) {
33064  PyErr_Format(PyExc_TypeError,
33065  "Shared Cython type %.200s is not a type object",
33066  type->tp_name);
33067  goto bad;
33068  }
33069  if (cached_type->tp_basicsize != type->tp_basicsize) {
33070  PyErr_Format(PyExc_TypeError,
33071  "Shared Cython type %.200s has the wrong size, try recompiling",
33072  type->tp_name);
33073  goto bad;
33074  }
33075  } else {
33076  if (!PyErr_ExceptionMatches(PyExc_AttributeError)) goto bad;
33077  PyErr_Clear();
33078  if (PyType_Ready(type) < 0) goto bad;
33079  if (PyObject_SetAttrString(fake_module, type->tp_name, (PyObject*) type) < 0)
33080  goto bad;
33081  Py_INCREF(type);
33082  cached_type = type;
33083  }
33084 done:
33085  Py_DECREF(fake_module);
33086  return cached_type;
33087 bad:
33088  Py_XDECREF(cached_type);
33089  cached_type = NULL;
33090  goto done;
33091 }
33092 
33093 /* CythonFunction */
33094  static PyObject *
33095 __Pyx_CyFunction_get_doc(__pyx_CyFunctionObject *op, CYTHON_UNUSED void *closure)
33096 {
33097  if (unlikely(op->func_doc == NULL)) {
33098  if (op->func.m_ml->ml_doc) {
33099 #if PY_MAJOR_VERSION >= 3
33100  op->func_doc = PyUnicode_FromString(op->func.m_ml->ml_doc);
33101 #else
33102  op->func_doc = PyString_FromString(op->func.m_ml->ml_doc);
33103 #endif
33104  if (unlikely(op->func_doc == NULL))
33105  return NULL;
33106  } else {
33107  Py_INCREF(Py_None);
33108  return Py_None;
33109  }
33110  }
33111  Py_INCREF(op->func_doc);
33112  return op->func_doc;
33113 }
33114 static int
33115 __Pyx_CyFunction_set_doc(__pyx_CyFunctionObject *op, PyObject *value)
33116 {
33117  PyObject *tmp = op->func_doc;
33118  if (value == NULL) {
33119  value = Py_None;
33120  }
33121  Py_INCREF(value);
33122  op->func_doc = value;
33123  Py_XDECREF(tmp);
33124  return 0;
33125 }
33126 static PyObject *
33127 __Pyx_CyFunction_get_name(__pyx_CyFunctionObject *op)
33128 {
33129  if (unlikely(op->func_name == NULL)) {
33130 #if PY_MAJOR_VERSION >= 3
33131  op->func_name = PyUnicode_InternFromString(op->func.m_ml->ml_name);
33132 #else
33133  op->func_name = PyString_InternFromString(op->func.m_ml->ml_name);
33134 #endif
33135  if (unlikely(op->func_name == NULL))
33136  return NULL;
33137  }
33138  Py_INCREF(op->func_name);
33139  return op->func_name;
33140 }
33141 static int
33142 __Pyx_CyFunction_set_name(__pyx_CyFunctionObject *op, PyObject *value)
33143 {
33144  PyObject *tmp;
33145 #if PY_MAJOR_VERSION >= 3
33146  if (unlikely(value == NULL || !PyUnicode_Check(value))) {
33147 #else
33148  if (unlikely(value == NULL || !PyString_Check(value))) {
33149 #endif
33150  PyErr_SetString(PyExc_TypeError,
33151  "__name__ must be set to a string object");
33152  return -1;
33153  }
33154  tmp = op->func_name;
33155  Py_INCREF(value);
33156  op->func_name = value;
33157  Py_XDECREF(tmp);
33158  return 0;
33159 }
33160 static PyObject *
33161 __Pyx_CyFunction_get_qualname(__pyx_CyFunctionObject *op)
33162 {
33163  Py_INCREF(op->func_qualname);
33164  return op->func_qualname;
33165 }
33166 static int
33167 __Pyx_CyFunction_set_qualname(__pyx_CyFunctionObject *op, PyObject *value)
33168 {
33169  PyObject *tmp;
33170 #if PY_MAJOR_VERSION >= 3
33171  if (unlikely(value == NULL || !PyUnicode_Check(value))) {
33172 #else
33173  if (unlikely(value == NULL || !PyString_Check(value))) {
33174 #endif
33175  PyErr_SetString(PyExc_TypeError,
33176  "__qualname__ must be set to a string object");
33177  return -1;
33178  }
33179  tmp = op->func_qualname;
33180  Py_INCREF(value);
33181  op->func_qualname = value;
33182  Py_XDECREF(tmp);
33183  return 0;
33184 }
33185 static PyObject *
33186 __Pyx_CyFunction_get_self(__pyx_CyFunctionObject *m, CYTHON_UNUSED void *closure)
33187 {
33188  PyObject *self;
33189  self = m->func_closure;
33190  if (self == NULL)
33191  self = Py_None;
33192  Py_INCREF(self);
33193  return self;
33194 }
33195 static PyObject *
33196 __Pyx_CyFunction_get_dict(__pyx_CyFunctionObject *op)
33197 {
33198  if (unlikely(op->func_dict == NULL)) {
33199  op->func_dict = PyDict_New();
33200  if (unlikely(op->func_dict == NULL))
33201  return NULL;
33202  }
33203  Py_INCREF(op->func_dict);
33204  return op->func_dict;
33205 }
33206 static int
33207 __Pyx_CyFunction_set_dict(__pyx_CyFunctionObject *op, PyObject *value)
33208 {
33209  PyObject *tmp;
33210  if (unlikely(value == NULL)) {
33211  PyErr_SetString(PyExc_TypeError,
33212  "function's dictionary may not be deleted");
33213  return -1;
33214  }
33215  if (unlikely(!PyDict_Check(value))) {
33216  PyErr_SetString(PyExc_TypeError,
33217  "setting function's dictionary to a non-dict");
33218  return -1;
33219  }
33220  tmp = op->func_dict;
33221  Py_INCREF(value);
33222  op->func_dict = value;
33223  Py_XDECREF(tmp);
33224  return 0;
33225 }
33226 static PyObject *
33227 __Pyx_CyFunction_get_globals(__pyx_CyFunctionObject *op)
33228 {
33229  Py_INCREF(op->func_globals);
33230  return op->func_globals;
33231 }
33232 static PyObject *
33233 __Pyx_CyFunction_get_closure(CYTHON_UNUSED __pyx_CyFunctionObject *op)
33234 {
33235  Py_INCREF(Py_None);
33236  return Py_None;
33237 }
33238 static PyObject *
33239 __Pyx_CyFunction_get_code(__pyx_CyFunctionObject *op)
33240 {
33241  PyObject* result = (op->func_code) ? op->func_code : Py_None;
33242  Py_INCREF(result);
33243  return result;
33244 }
33245 static int
33246 __Pyx_CyFunction_init_defaults(__pyx_CyFunctionObject *op) {
33247  int result = 0;
33248  PyObject *res = op->defaults_getter((PyObject *) op);
33249  if (unlikely(!res))
33250  return -1;
33251  #if CYTHON_ASSUME_SAFE_MACROS && !CYTHON_AVOID_BORROWED_REFS
33252  op->defaults_tuple = PyTuple_GET_ITEM(res, 0);
33253  Py_INCREF(op->defaults_tuple);
33254  op->defaults_kwdict = PyTuple_GET_ITEM(res, 1);
33255  Py_INCREF(op->defaults_kwdict);
33256  #else
33257  op->defaults_tuple = PySequence_ITEM(res, 0);
33258  if (unlikely(!op->defaults_tuple)) result = -1;
33259  else {
33260  op->defaults_kwdict = PySequence_ITEM(res, 1);
33261  if (unlikely(!op->defaults_kwdict)) result = -1;
33262  }
33263  #endif
33264  Py_DECREF(res);
33265  return result;
33266 }
33267 static int
33268 __Pyx_CyFunction_set_defaults(__pyx_CyFunctionObject *op, PyObject* value) {
33269  PyObject* tmp;
33270  if (!value) {
33271  value = Py_None;
33272  } else if (value != Py_None && !PyTuple_Check(value)) {
33273  PyErr_SetString(PyExc_TypeError,
33274  "__defaults__ must be set to a tuple object");
33275  return -1;
33276  }
33277  Py_INCREF(value);
33278  tmp = op->defaults_tuple;
33279  op->defaults_tuple = value;
33280  Py_XDECREF(tmp);
33281  return 0;
33282 }
33283 static PyObject *
33284 __Pyx_CyFunction_get_defaults(__pyx_CyFunctionObject *op) {
33285  PyObject* result = op->defaults_tuple;
33286  if (unlikely(!result)) {
33287  if (op->defaults_getter) {
33288  if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
33289  result = op->defaults_tuple;
33290  } else {
33291  result = Py_None;
33292  }
33293  }
33294  Py_INCREF(result);
33295  return result;
33296 }
33297 static int
33298 __Pyx_CyFunction_set_kwdefaults(__pyx_CyFunctionObject *op, PyObject* value) {
33299  PyObject* tmp;
33300  if (!value) {
33301  value = Py_None;
33302  } else if (value != Py_None && !PyDict_Check(value)) {
33303  PyErr_SetString(PyExc_TypeError,
33304  "__kwdefaults__ must be set to a dict object");
33305  return -1;
33306  }
33307  Py_INCREF(value);
33308  tmp = op->defaults_kwdict;
33309  op->defaults_kwdict = value;
33310  Py_XDECREF(tmp);
33311  return 0;
33312 }
33313 static PyObject *
33314 __Pyx_CyFunction_get_kwdefaults(__pyx_CyFunctionObject *op) {
33315  PyObject* result = op->defaults_kwdict;
33316  if (unlikely(!result)) {
33317  if (op->defaults_getter) {
33318  if (__Pyx_CyFunction_init_defaults(op) < 0) return NULL;
33319  result = op->defaults_kwdict;
33320  } else {
33321  result = Py_None;
33322  }
33323  }
33324  Py_INCREF(result);
33325  return result;
33326 }
33327 static int
33328 __Pyx_CyFunction_set_annotations(__pyx_CyFunctionObject *op, PyObject* value) {
33329  PyObject* tmp;
33330  if (!value || value == Py_None) {
33331  value = NULL;
33332  } else if (!PyDict_Check(value)) {
33333  PyErr_SetString(PyExc_TypeError,
33334  "__annotations__ must be set to a dict object");
33335  return -1;
33336  }
33337  Py_XINCREF(value);
33338  tmp = op->func_annotations;
33339  op->func_annotations = value;
33340  Py_XDECREF(tmp);
33341  return 0;
33342 }
33343 static PyObject *
33344 __Pyx_CyFunction_get_annotations(__pyx_CyFunctionObject *op) {
33345  PyObject* result = op->func_annotations;
33346  if (unlikely(!result)) {
33347  result = PyDict_New();
33348  if (unlikely(!result)) return NULL;
33349  op->func_annotations = result;
33350  }
33351  Py_INCREF(result);
33352  return result;
33353 }
33354 static PyGetSetDef __pyx_CyFunction_getsets[] = {
33355  {(char *) "func_doc", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
33356  {(char *) "__doc__", (getter)__Pyx_CyFunction_get_doc, (setter)__Pyx_CyFunction_set_doc, 0, 0},
33357  {(char *) "func_name", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
33358  {(char *) "__name__", (getter)__Pyx_CyFunction_get_name, (setter)__Pyx_CyFunction_set_name, 0, 0},
33359  {(char *) "__qualname__", (getter)__Pyx_CyFunction_get_qualname, (setter)__Pyx_CyFunction_set_qualname, 0, 0},
33360  {(char *) "__self__", (getter)__Pyx_CyFunction_get_self, 0, 0, 0},
33361  {(char *) "func_dict", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
33362  {(char *) "__dict__", (getter)__Pyx_CyFunction_get_dict, (setter)__Pyx_CyFunction_set_dict, 0, 0},
33363  {(char *) "func_globals", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
33364  {(char *) "__globals__", (getter)__Pyx_CyFunction_get_globals, 0, 0, 0},
33365  {(char *) "func_closure", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
33366  {(char *) "__closure__", (getter)__Pyx_CyFunction_get_closure, 0, 0, 0},
33367  {(char *) "func_code", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
33368  {(char *) "__code__", (getter)__Pyx_CyFunction_get_code, 0, 0, 0},
33369  {(char *) "func_defaults", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
33370  {(char *) "__defaults__", (getter)__Pyx_CyFunction_get_defaults, (setter)__Pyx_CyFunction_set_defaults, 0, 0},
33371  {(char *) "__kwdefaults__", (getter)__Pyx_CyFunction_get_kwdefaults, (setter)__Pyx_CyFunction_set_kwdefaults, 0, 0},
33372  {(char *) "__annotations__", (getter)__Pyx_CyFunction_get_annotations, (setter)__Pyx_CyFunction_set_annotations, 0, 0},
33373  {0, 0, 0, 0, 0}
33374 };
33375 static PyMemberDef __pyx_CyFunction_members[] = {
33376  {(char *) "__module__", T_OBJECT, offsetof(__pyx_CyFunctionObject, func.m_module), PY_WRITE_RESTRICTED, 0},
33377  {0, 0, 0, 0, 0}
33378 };
33379 static PyObject *
33380 __Pyx_CyFunction_reduce(__pyx_CyFunctionObject *m, CYTHON_UNUSED PyObject *args)
33381 {
33382 #if PY_MAJOR_VERSION >= 3
33383  return PyUnicode_FromString(m->func.m_ml->ml_name);
33384 #else
33385  return PyString_FromString(m->func.m_ml->ml_name);
33386 #endif
33387 }
33388 static PyMethodDef __pyx_CyFunction_methods[] = {
33389  {"__reduce__", (PyCFunction)__Pyx_CyFunction_reduce, METH_VARARGS, 0},
33390  {0, 0, 0, 0}
33391 };
33392 #if PY_VERSION_HEX < 0x030500A0
33393 #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func_weakreflist)
33394 #else
33395 #define __Pyx_CyFunction_weakreflist(cyfunc) ((cyfunc)->func.m_weakreflist)
33396 #endif
33397 static PyObject *__Pyx_CyFunction_New(PyTypeObject *type, PyMethodDef *ml, int flags, PyObject* qualname,
33398  PyObject *closure, PyObject *module, PyObject* globals, PyObject* code) {
33399  __pyx_CyFunctionObject *op = PyObject_GC_New(__pyx_CyFunctionObject, type);
33400  if (op == NULL)
33401  return NULL;
33402  op->flags = flags;
33403  __Pyx_CyFunction_weakreflist(op) = NULL;
33404  op->func.m_ml = ml;
33405  op->func.m_self = (PyObject *) op;
33406  Py_XINCREF(closure);
33407  op->func_closure = closure;
33408  Py_XINCREF(module);
33409  op->func.m_module = module;
33410  op->func_dict = NULL;
33411  op->func_name = NULL;
33412  Py_INCREF(qualname);
33413  op->func_qualname = qualname;
33414  op->func_doc = NULL;
33415  op->func_classobj = NULL;
33416  op->func_globals = globals;
33417  Py_INCREF(op->func_globals);
33418  Py_XINCREF(code);
33419  op->func_code = code;
33420  op->defaults_pyobjects = 0;
33421  op->defaults = NULL;
33422  op->defaults_tuple = NULL;
33423  op->defaults_kwdict = NULL;
33424  op->defaults_getter = NULL;
33425  op->func_annotations = NULL;
33426  PyObject_GC_Track(op);
33427  return (PyObject *) op;
33428 }
33429 static int
33430 __Pyx_CyFunction_clear(__pyx_CyFunctionObject *m)
33431 {
33432  Py_CLEAR(m->func_closure);
33433  Py_CLEAR(m->func.m_module);
33434  Py_CLEAR(m->func_dict);
33435  Py_CLEAR(m->func_name);
33436  Py_CLEAR(m->func_qualname);
33437  Py_CLEAR(m->func_doc);
33438  Py_CLEAR(m->func_globals);
33439  Py_CLEAR(m->func_code);
33440  Py_CLEAR(m->func_classobj);
33441  Py_CLEAR(m->defaults_tuple);
33442  Py_CLEAR(m->defaults_kwdict);
33443  Py_CLEAR(m->func_annotations);
33444  if (m->defaults) {
33445  PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
33446  int i;
33447  for (i = 0; i < m->defaults_pyobjects; i++)
33448  Py_XDECREF(pydefaults[i]);
33449  PyObject_Free(m->defaults);
33450  m->defaults = NULL;
33451  }
33452  return 0;
33453 }
33454 static void __Pyx_CyFunction_dealloc(__pyx_CyFunctionObject *m)
33455 {
33456  PyObject_GC_UnTrack(m);
33457  if (__Pyx_CyFunction_weakreflist(m) != NULL)
33458  PyObject_ClearWeakRefs((PyObject *) m);
33459  __Pyx_CyFunction_clear(m);
33460  PyObject_GC_Del(m);
33461 }
33462 static int __Pyx_CyFunction_traverse(__pyx_CyFunctionObject *m, visitproc visit, void *arg)
33463 {
33464  Py_VISIT(m->func_closure);
33465  Py_VISIT(m->func.m_module);
33466  Py_VISIT(m->func_dict);
33467  Py_VISIT(m->func_name);
33468  Py_VISIT(m->func_qualname);
33469  Py_VISIT(m->func_doc);
33470  Py_VISIT(m->func_globals);
33471  Py_VISIT(m->func_code);
33472  Py_VISIT(m->func_classobj);
33473  Py_VISIT(m->defaults_tuple);
33474  Py_VISIT(m->defaults_kwdict);
33475  if (m->defaults) {
33476  PyObject **pydefaults = __Pyx_CyFunction_Defaults(PyObject *, m);
33477  int i;
33478  for (i = 0; i < m->defaults_pyobjects; i++)
33479  Py_VISIT(pydefaults[i]);
33480  }
33481  return 0;
33482 }
33483 static PyObject *__Pyx_CyFunction_descr_get(PyObject *func, PyObject *obj, PyObject *type)
33484 {
33485  __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
33486  if (m->flags & __Pyx_CYFUNCTION_STATICMETHOD) {
33487  Py_INCREF(func);
33488  return func;
33489  }
33490  if (m->flags & __Pyx_CYFUNCTION_CLASSMETHOD) {
33491  if (type == NULL)
33492  type = (PyObject *)(Py_TYPE(obj));
33493  return __Pyx_PyMethod_New(func, type, (PyObject *)(Py_TYPE(type)));
33494  }
33495  if (obj == Py_None)
33496  obj = NULL;
33497  return __Pyx_PyMethod_New(func, obj, type);
33498 }
33499 static PyObject*
33500 __Pyx_CyFunction_repr(__pyx_CyFunctionObject *op)
33501 {
33502 #if PY_MAJOR_VERSION >= 3
33503  return PyUnicode_FromFormat("<cyfunction %U at %p>",
33504  op->func_qualname, (void *)op);
33505 #else
33506  return PyString_FromFormat("<cyfunction %s at %p>",
33507  PyString_AsString(op->func_qualname), (void *)op);
33508 #endif
33509 }
33510 static PyObject * __Pyx_CyFunction_CallMethod(PyObject *func, PyObject *self, PyObject *arg, PyObject *kw) {
33511  PyCFunctionObject* f = (PyCFunctionObject*)func;
33512  PyCFunction meth = f->m_ml->ml_meth;
33513  Py_ssize_t size;
33514  switch (f->m_ml->ml_flags & (METH_VARARGS | METH_KEYWORDS | METH_NOARGS | METH_O)) {
33515  case METH_VARARGS:
33516  if (likely(kw == NULL || PyDict_Size(kw) == 0))
33517  return (*meth)(self, arg);
33518  break;
33519  case METH_VARARGS | METH_KEYWORDS:
33520  return (*(PyCFunctionWithKeywords)meth)(self, arg, kw);
33521  case METH_NOARGS:
33522  if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
33523  size = PyTuple_GET_SIZE(arg);
33524  if (likely(size == 0))
33525  return (*meth)(self, NULL);
33526  PyErr_Format(PyExc_TypeError,
33527  "%.200s() takes no arguments (%" CYTHON_FORMAT_SSIZE_T "d given)",
33528  f->m_ml->ml_name, size);
33529  return NULL;
33530  }
33531  break;
33532  case METH_O:
33533  if (likely(kw == NULL || PyDict_Size(kw) == 0)) {
33534  size = PyTuple_GET_SIZE(arg);
33535  if (likely(size == 1)) {
33536  PyObject *result, *arg0 = PySequence_ITEM(arg, 0);
33537  if (unlikely(!arg0)) return NULL;
33538  result = (*meth)(self, arg0);
33539  Py_DECREF(arg0);
33540  return result;
33541  }
33542  PyErr_Format(PyExc_TypeError,
33543  "%.200s() takes exactly one argument (%" CYTHON_FORMAT_SSIZE_T "d given)",
33544  f->m_ml->ml_name, size);
33545  return NULL;
33546  }
33547  break;
33548  default:
33549  PyErr_SetString(PyExc_SystemError, "Bad call flags in "
33550  "__Pyx_CyFunction_Call. METH_OLDARGS is no "
33551  "longer supported!");
33552  return NULL;
33553  }
33554  PyErr_Format(PyExc_TypeError, "%.200s() takes no keyword arguments",
33555  f->m_ml->ml_name);
33556  return NULL;
33557 }
33558 static CYTHON_INLINE PyObject *__Pyx_CyFunction_Call(PyObject *func, PyObject *arg, PyObject *kw) {
33559  return __Pyx_CyFunction_CallMethod(func, ((PyCFunctionObject*)func)->m_self, arg, kw);
33560 }
33561 static PyObject *__Pyx_CyFunction_CallAsMethod(PyObject *func, PyObject *args, PyObject *kw) {
33562  PyObject *result;
33563  __pyx_CyFunctionObject *cyfunc = (__pyx_CyFunctionObject *) func;
33564  if ((cyfunc->flags & __Pyx_CYFUNCTION_CCLASS) && !(cyfunc->flags & __Pyx_CYFUNCTION_STATICMETHOD)) {
33565  Py_ssize_t argc;
33566  PyObject *new_args;
33567  PyObject *self;
33568  argc = PyTuple_GET_SIZE(args);
33569  new_args = PyTuple_GetSlice(args, 1, argc);
33570  if (unlikely(!new_args))
33571  return NULL;
33572  self = PyTuple_GetItem(args, 0);
33573  if (unlikely(!self)) {
33574  Py_DECREF(new_args);
33575  return NULL;
33576  }
33577  result = __Pyx_CyFunction_CallMethod(func, self, new_args, kw);
33578  Py_DECREF(new_args);
33579  } else {
33580  result = __Pyx_CyFunction_Call(func, args, kw);
33581  }
33582  return result;
33583 }
33584 static PyTypeObject __pyx_CyFunctionType_type = {
33585  PyVarObject_HEAD_INIT(0, 0)
33586  "cython_function_or_method",
33587  sizeof(__pyx_CyFunctionObject),
33588  0,
33589  (destructor) __Pyx_CyFunction_dealloc,
33590  0,
33591  0,
33592  0,
33593 #if PY_MAJOR_VERSION < 3
33594  0,
33595 #else
33596  0,
33597 #endif
33598  (reprfunc) __Pyx_CyFunction_repr,
33599  0,
33600  0,
33601  0,
33602  0,
33603  __Pyx_CyFunction_CallAsMethod,
33604  0,
33605  0,
33606  0,
33607  0,
33608  Py_TPFLAGS_DEFAULT | Py_TPFLAGS_HAVE_GC,
33609  0,
33610  (traverseproc) __Pyx_CyFunction_traverse,
33611  (inquiry) __Pyx_CyFunction_clear,
33612  0,
33613 #if PY_VERSION_HEX < 0x030500A0
33614  offsetof(__pyx_CyFunctionObject, func_weakreflist),
33615 #else
33616  offsetof(PyCFunctionObject, m_weakreflist),
33617 #endif
33618  0,
33619  0,
33620  __pyx_CyFunction_methods,
33621  __pyx_CyFunction_members,
33622  __pyx_CyFunction_getsets,
33623  0,
33624  0,
33625  __Pyx_CyFunction_descr_get,
33626  0,
33627  offsetof(__pyx_CyFunctionObject, func_dict),
33628  0,
33629  0,
33630  0,
33631  0,
33632  0,
33633  0,
33634  0,
33635  0,
33636  0,
33637  0,
33638  0,
33639  0,
33640 #if PY_VERSION_HEX >= 0x030400a1
33641  0,
33642 #endif
33643 };
33644 static int __pyx_CyFunction_init(void) {
33645  __pyx_CyFunctionType = __Pyx_FetchCommonType(&__pyx_CyFunctionType_type);
33646  if (__pyx_CyFunctionType == NULL) {
33647  return -1;
33648  }
33649  return 0;
33650 }
33651 static CYTHON_INLINE void *__Pyx_CyFunction_InitDefaults(PyObject *func, size_t size, int pyobjects) {
33652  __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
33653  m->defaults = PyObject_Malloc(size);
33654  if (!m->defaults)
33655  return PyErr_NoMemory();
33656  memset(m->defaults, 0, size);
33657  m->defaults_pyobjects = pyobjects;
33658  return m->defaults;
33659 }
33660 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsTuple(PyObject *func, PyObject *tuple) {
33661  __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
33662  m->defaults_tuple = tuple;
33663  Py_INCREF(tuple);
33664 }
33665 static CYTHON_INLINE void __Pyx_CyFunction_SetDefaultsKwDict(PyObject *func, PyObject *dict) {
33666  __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
33667  m->defaults_kwdict = dict;
33668  Py_INCREF(dict);
33669 }
33670 static CYTHON_INLINE void __Pyx_CyFunction_SetAnnotationsDict(PyObject *func, PyObject *dict) {
33671  __pyx_CyFunctionObject *m = (__pyx_CyFunctionObject *) func;
33672  m->func_annotations = dict;
33673  Py_INCREF(dict);
33674 }
33675 
33676 /* Py3ClassCreate */
33677  static PyObject *__Pyx_Py3MetaclassPrepare(PyObject *metaclass, PyObject *bases, PyObject *name,
33678  PyObject *qualname, PyObject *mkw, PyObject *modname, PyObject *doc) {
33679  PyObject *ns;
33680  if (metaclass) {
33681  PyObject *prep = __Pyx_PyObject_GetAttrStr(metaclass, __pyx_n_s_prepare);
33682  if (prep) {
33683  PyObject *pargs = PyTuple_Pack(2, name, bases);
33684  if (unlikely(!pargs)) {
33685  Py_DECREF(prep);
33686  return NULL;
33687  }
33688  ns = PyObject_Call(prep, pargs, mkw);
33689  Py_DECREF(prep);
33690  Py_DECREF(pargs);
33691  } else {
33692  if (unlikely(!PyErr_ExceptionMatches(PyExc_AttributeError)))
33693  return NULL;
33694  PyErr_Clear();
33695  ns = PyDict_New();
33696  }
33697  } else {
33698  ns = PyDict_New();
33699  }
33700  if (unlikely(!ns))
33701  return NULL;
33702  if (unlikely(PyObject_SetItem(ns, __pyx_n_s_module, modname) < 0)) goto bad;
33703  if (unlikely(PyObject_SetItem(ns, __pyx_n_s_qualname, qualname) < 0)) goto bad;
33704  if (unlikely(doc && PyObject_SetItem(ns, __pyx_n_s_doc, doc) < 0)) goto bad;
33705  return ns;
33706 bad:
33707  Py_DECREF(ns);
33708  return NULL;
33709 }
33710 static PyObject *__Pyx_Py3ClassCreate(PyObject *metaclass, PyObject *name, PyObject *bases,
33711  PyObject *dict, PyObject *mkw,
33712  int calculate_metaclass, int allow_py2_metaclass) {
33713  PyObject *result, *margs;
33714  PyObject *owned_metaclass = NULL;
33715  if (allow_py2_metaclass) {
33716  owned_metaclass = PyObject_GetItem(dict, __pyx_n_s_metaclass);
33717  if (owned_metaclass) {
33718  metaclass = owned_metaclass;
33719  } else if (likely(PyErr_ExceptionMatches(PyExc_KeyError))) {
33720  PyErr_Clear();
33721  } else {
33722  return NULL;
33723  }
33724  }
33725  if (calculate_metaclass && (!metaclass || PyType_Check(metaclass))) {
33726  metaclass = __Pyx_CalculateMetaclass((PyTypeObject*) metaclass, bases);
33727  Py_XDECREF(owned_metaclass);
33728  if (unlikely(!metaclass))
33729  return NULL;
33730  owned_metaclass = metaclass;
33731  }
33732  margs = PyTuple_Pack(3, name, bases, dict);
33733  if (unlikely(!margs)) {
33734  result = NULL;
33735  } else {
33736  result = PyObject_Call(metaclass, margs, mkw);
33737  Py_DECREF(margs);
33738  }
33739  Py_XDECREF(owned_metaclass);
33740  return result;
33741 }
33742 
33743 /* CodeObjectCache */
33744  static int __pyx_bisect_code_objects(__Pyx_CodeObjectCacheEntry* entries, int count, int code_line) {
33745  int start = 0, mid = 0, end = count - 1;
33746  if (end >= 0 && code_line > entries[end].code_line) {
33747  return count;
33748  }
33749  while (start < end) {
33750  mid = start + (end - start) / 2;
33751  if (code_line < entries[mid].code_line) {
33752  end = mid;
33753  } else if (code_line > entries[mid].code_line) {
33754  start = mid + 1;
33755  } else {
33756  return mid;
33757  }
33758  }
33759  if (code_line <= entries[mid].code_line) {
33760  return mid;
33761  } else {
33762  return mid + 1;
33763  }
33764 }
33765 static PyCodeObject *__pyx_find_code_object(int code_line) {
33766  PyCodeObject* code_object;
33767  int pos;
33768  if (unlikely(!code_line) || unlikely(!__pyx_code_cache.entries)) {
33769  return NULL;
33770  }
33771  pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
33772  if (unlikely(pos >= __pyx_code_cache.count) || unlikely(__pyx_code_cache.entries[pos].code_line != code_line)) {
33773  return NULL;
33774  }
33775  code_object = __pyx_code_cache.entries[pos].code_object;
33776  Py_INCREF(code_object);
33777  return code_object;
33778 }
33779 static void __pyx_insert_code_object(int code_line, PyCodeObject* code_object) {
33780  int pos, i;
33781  __Pyx_CodeObjectCacheEntry* entries = __pyx_code_cache.entries;
33782  if (unlikely(!code_line)) {
33783  return;
33784  }
33785  if (unlikely(!entries)) {
33786  entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Malloc(64*sizeof(__Pyx_CodeObjectCacheEntry));
33787  if (likely(entries)) {
33788  __pyx_code_cache.entries = entries;
33789  __pyx_code_cache.max_count = 64;
33790  __pyx_code_cache.count = 1;
33791  entries[0].code_line = code_line;
33792  entries[0].code_object = code_object;
33793  Py_INCREF(code_object);
33794  }
33795  return;
33796  }
33797  pos = __pyx_bisect_code_objects(__pyx_code_cache.entries, __pyx_code_cache.count, code_line);
33798  if ((pos < __pyx_code_cache.count) && unlikely(__pyx_code_cache.entries[pos].code_line == code_line)) {
33799  PyCodeObject* tmp = entries[pos].code_object;
33800  entries[pos].code_object = code_object;
33801  Py_DECREF(tmp);
33802  return;
33803  }
33804  if (__pyx_code_cache.count == __pyx_code_cache.max_count) {
33805  int new_max = __pyx_code_cache.max_count + 64;
33806  entries = (__Pyx_CodeObjectCacheEntry*)PyMem_Realloc(
33807  __pyx_code_cache.entries, (size_t)new_max*sizeof(__Pyx_CodeObjectCacheEntry));
33808  if (unlikely(!entries)) {
33809  return;
33810  }
33811  __pyx_code_cache.entries = entries;
33812  __pyx_code_cache.max_count = new_max;
33813  }
33814  for (i=__pyx_code_cache.count; i>pos; i--) {
33815  entries[i] = entries[i-1];
33816  }
33817  entries[pos].code_line = code_line;
33818  entries[pos].code_object = code_object;
33819  __pyx_code_cache.count++;
33820  Py_INCREF(code_object);
33821 }
33822 
33823 /* AddTraceback */
33824  #include "compile.h"
33825 #include "frameobject.h"
33826 #include "traceback.h"
33827 static PyCodeObject* __Pyx_CreateCodeObjectForTraceback(
33828  const char *funcname, int c_line,
33829  int py_line, const char *filename) {
33830  PyCodeObject *py_code = 0;
33831  PyObject *py_srcfile = 0;
33832  PyObject *py_funcname = 0;
33833  #if PY_MAJOR_VERSION < 3
33834  py_srcfile = PyString_FromString(filename);
33835  #else
33836  py_srcfile = PyUnicode_FromString(filename);
33837  #endif
33838  if (!py_srcfile) goto bad;
33839  if (c_line) {
33840  #if PY_MAJOR_VERSION < 3
33841  py_funcname = PyString_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
33842  #else
33843  py_funcname = PyUnicode_FromFormat( "%s (%s:%d)", funcname, __pyx_cfilenm, c_line);
33844  #endif
33845  }
33846  else {
33847  #if PY_MAJOR_VERSION < 3
33848  py_funcname = PyString_FromString(funcname);
33849  #else
33850  py_funcname = PyUnicode_FromString(funcname);
33851  #endif
33852  }
33853  if (!py_funcname) goto bad;
33854  py_code = __Pyx_PyCode_New(
33855  0,
33856  0,
33857  0,
33858  0,
33859  0,
33860  __pyx_empty_bytes, /*PyObject *code,*/
33861  __pyx_empty_tuple, /*PyObject *consts,*/
33862  __pyx_empty_tuple, /*PyObject *names,*/
33863  __pyx_empty_tuple, /*PyObject *varnames,*/
33864  __pyx_empty_tuple, /*PyObject *freevars,*/
33865  __pyx_empty_tuple, /*PyObject *cellvars,*/
33866  py_srcfile, /*PyObject *filename,*/
33867  py_funcname, /*PyObject *name,*/
33868  py_line,
33869  __pyx_empty_bytes /*PyObject *lnotab*/
33870  );
33871  Py_DECREF(py_srcfile);
33872  Py_DECREF(py_funcname);
33873  return py_code;
33874 bad:
33875  Py_XDECREF(py_srcfile);
33876  Py_XDECREF(py_funcname);
33877  return NULL;
33878 }
33879 static void __Pyx_AddTraceback(const char *funcname, int c_line,
33880  int py_line, const char *filename) {
33881  PyCodeObject *py_code = 0;
33882  PyFrameObject *py_frame = 0;
33883  py_code = __pyx_find_code_object(c_line ? c_line : py_line);
33884  if (!py_code) {
33885  py_code = __Pyx_CreateCodeObjectForTraceback(
33886  funcname, c_line, py_line, filename);
33887  if (!py_code) goto bad;
33888  __pyx_insert_code_object(c_line ? c_line : py_line, py_code);
33889  }
33890  py_frame = PyFrame_New(
33891  PyThreadState_GET(), /*PyThreadState *tstate,*/
33892  py_code, /*PyCodeObject *code,*/
33893  __pyx_d, /*PyObject *globals,*/
33894  0 /*PyObject *locals*/
33895  );
33896  if (!py_frame) goto bad;
33897  __Pyx_PyFrame_SetLineNumber(py_frame, py_line);
33898  PyTraceBack_Here(py_frame);
33899 bad:
33900  Py_XDECREF(py_code);
33901  Py_XDECREF(py_frame);
33902 }
33903 
33904 /* CIntFromPyVerify */
33905  #define __PYX_VERIFY_RETURN_INT(target_type, func_type, func_value)\
33906  __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 0)
33907 #define __PYX_VERIFY_RETURN_INT_EXC(target_type, func_type, func_value)\
33908  __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, 1)
33909 #define __PYX__VERIFY_RETURN_INT(target_type, func_type, func_value, exc)\
33910  {\
33911  func_type value = func_value;\
33912  if (sizeof(target_type) < sizeof(func_type)) {\
33913  if (unlikely(value != (func_type) (target_type) value)) {\
33914  func_type zero = 0;\
33915  if (exc && unlikely(value == (func_type)-1 && PyErr_Occurred()))\
33916  return (target_type) -1;\
33917  if (is_unsigned && unlikely(value < zero))\
33918  goto raise_neg_overflow;\
33919  else\
33920  goto raise_overflow;\
33921  }\
33922  }\
33923  return (target_type) value;\
33924  }
33925 
33926 /* CIntToPy */
33927  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_long(long value) {
33928  const long neg_one = (long) -1, const_zero = (long) 0;
33929  const int is_unsigned = neg_one > const_zero;
33930  if (is_unsigned) {
33931  if (sizeof(long) < sizeof(long)) {
33932  return PyInt_FromLong((long) value);
33933  } else if (sizeof(long) <= sizeof(unsigned long)) {
33934  return PyLong_FromUnsignedLong((unsigned long) value);
33935 #ifdef HAVE_LONG_LONG
33936  } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
33937  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
33938 #endif
33939  }
33940  } else {
33941  if (sizeof(long) <= sizeof(long)) {
33942  return PyInt_FromLong((long) value);
33943 #ifdef HAVE_LONG_LONG
33944  } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
33945  return PyLong_FromLongLong((PY_LONG_LONG) value);
33946 #endif
33947  }
33948  }
33949  {
33950  int one = 1; int little = (int)*(unsigned char *)&one;
33951  unsigned char *bytes = (unsigned char *)&value;
33952  return _PyLong_FromByteArray(bytes, sizeof(long),
33953  little, !is_unsigned);
33954  }
33955 }
33956 
33957 /* Declarations */
33958  #if CYTHON_CCOMPLEX
33959  #ifdef __cplusplus
33960  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
33961  return ::std::complex< float >(x, y);
33962  }
33963  #else
33964  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
33965  return x + y*(__pyx_t_float_complex)_Complex_I;
33966  }
33967  #endif
33968 #else
33969  static CYTHON_INLINE __pyx_t_float_complex __pyx_t_float_complex_from_parts(float x, float y) {
33970  __pyx_t_float_complex z;
33971  z.real = x;
33972  z.imag = y;
33973  return z;
33974  }
33975 #endif
33976 
33977 /* Arithmetic */
33978  #if CYTHON_CCOMPLEX
33979 #else
33980  static CYTHON_INLINE int __Pyx_c_eq_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
33981  return (a.real == b.real) && (a.imag == b.imag);
33982  }
33983  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_sum_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
33984  __pyx_t_float_complex z;
33985  z.real = a.real + b.real;
33986  z.imag = a.imag + b.imag;
33987  return z;
33988  }
33989  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_diff_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
33990  __pyx_t_float_complex z;
33991  z.real = a.real - b.real;
33992  z.imag = a.imag - b.imag;
33993  return z;
33994  }
33995  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_prod_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
33996  __pyx_t_float_complex z;
33997  z.real = a.real * b.real - a.imag * b.imag;
33998  z.imag = a.real * b.imag + a.imag * b.real;
33999  return z;
34000  }
34001  #if 1
34002  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
34003  if (b.imag == 0) {
34004  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
34005  } else if (fabsf(b.real) >= fabsf(b.imag)) {
34006  if (b.real == 0 && b.imag == 0) {
34007  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.imag);
34008  } else {
34009  float r = b.imag / b.real;
34010  float s = 1.0 / (b.real + b.imag * r);
34011  return __pyx_t_float_complex_from_parts(
34012  (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
34013  }
34014  } else {
34015  float r = b.real / b.imag;
34016  float s = 1.0 / (b.imag + b.real * r);
34017  return __pyx_t_float_complex_from_parts(
34018  (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
34019  }
34020  }
34021  #else
34022  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_quot_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
34023  if (b.imag == 0) {
34024  return __pyx_t_float_complex_from_parts(a.real / b.real, a.imag / b.real);
34025  } else {
34026  float denom = b.real * b.real + b.imag * b.imag;
34027  return __pyx_t_float_complex_from_parts(
34028  (a.real * b.real + a.imag * b.imag) / denom,
34029  (a.imag * b.real - a.real * b.imag) / denom);
34030  }
34031  }
34032  #endif
34033  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_neg_float(__pyx_t_float_complex a) {
34034  __pyx_t_float_complex z;
34035  z.real = -a.real;
34036  z.imag = -a.imag;
34037  return z;
34038  }
34039  static CYTHON_INLINE int __Pyx_c_is_zero_float(__pyx_t_float_complex a) {
34040  return (a.real == 0) && (a.imag == 0);
34041  }
34042  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_conj_float(__pyx_t_float_complex a) {
34043  __pyx_t_float_complex z;
34044  z.real = a.real;
34045  z.imag = -a.imag;
34046  return z;
34047  }
34048  #if 1
34049  static CYTHON_INLINE float __Pyx_c_abs_float(__pyx_t_float_complex z) {
34050  #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
34051  return sqrtf(z.real*z.real + z.imag*z.imag);
34052  #else
34053  return hypotf(z.real, z.imag);
34054  #endif
34055  }
34056  static CYTHON_INLINE __pyx_t_float_complex __Pyx_c_pow_float(__pyx_t_float_complex a, __pyx_t_float_complex b) {
34057  __pyx_t_float_complex z;
34058  float r, lnr, theta, z_r, z_theta;
34059  if (b.imag == 0 && b.real == (int)b.real) {
34060  if (b.real < 0) {
34061  float denom = a.real * a.real + a.imag * a.imag;
34062  a.real = a.real / denom;
34063  a.imag = -a.imag / denom;
34064  b.real = -b.real;
34065  }
34066  switch ((int)b.real) {
34067  case 0:
34068  z.real = 1;
34069  z.imag = 0;
34070  return z;
34071  case 1:
34072  return a;
34073  case 2:
34074  z = __Pyx_c_prod_float(a, a);
34075  return __Pyx_c_prod_float(a, a);
34076  case 3:
34077  z = __Pyx_c_prod_float(a, a);
34078  return __Pyx_c_prod_float(z, a);
34079  case 4:
34080  z = __Pyx_c_prod_float(a, a);
34081  return __Pyx_c_prod_float(z, z);
34082  }
34083  }
34084  if (a.imag == 0) {
34085  if (a.real == 0) {
34086  return a;
34087  } else if (b.imag == 0) {
34088  z.real = powf(a.real, b.real);
34089  z.imag = 0;
34090  return z;
34091  } else if (a.real > 0) {
34092  r = a.real;
34093  theta = 0;
34094  } else {
34095  r = -a.real;
34096  theta = atan2f(0, -1);
34097  }
34098  } else {
34099  r = __Pyx_c_abs_float(a);
34100  theta = atan2f(a.imag, a.real);
34101  }
34102  lnr = logf(r);
34103  z_r = expf(lnr * b.real - theta * b.imag);
34104  z_theta = theta * b.real + lnr * b.imag;
34105  z.real = z_r * cosf(z_theta);
34106  z.imag = z_r * sinf(z_theta);
34107  return z;
34108  }
34109  #endif
34110 #endif
34111 
34112 /* Declarations */
34113  #if CYTHON_CCOMPLEX
34114  #ifdef __cplusplus
34115  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
34116  return ::std::complex< double >(x, y);
34117  }
34118  #else
34119  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
34120  return x + y*(__pyx_t_double_complex)_Complex_I;
34121  }
34122  #endif
34123 #else
34124  static CYTHON_INLINE __pyx_t_double_complex __pyx_t_double_complex_from_parts(double x, double y) {
34125  __pyx_t_double_complex z;
34126  z.real = x;
34127  z.imag = y;
34128  return z;
34129  }
34130 #endif
34131 
34132 /* Arithmetic */
34133  #if CYTHON_CCOMPLEX
34134 #else
34135  static CYTHON_INLINE int __Pyx_c_eq_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
34136  return (a.real == b.real) && (a.imag == b.imag);
34137  }
34138  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_sum_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
34139  __pyx_t_double_complex z;
34140  z.real = a.real + b.real;
34141  z.imag = a.imag + b.imag;
34142  return z;
34143  }
34144  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_diff_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
34145  __pyx_t_double_complex z;
34146  z.real = a.real - b.real;
34147  z.imag = a.imag - b.imag;
34148  return z;
34149  }
34150  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_prod_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
34151  __pyx_t_double_complex z;
34152  z.real = a.real * b.real - a.imag * b.imag;
34153  z.imag = a.real * b.imag + a.imag * b.real;
34154  return z;
34155  }
34156  #if 1
34157  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
34158  if (b.imag == 0) {
34159  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
34160  } else if (fabs(b.real) >= fabs(b.imag)) {
34161  if (b.real == 0 && b.imag == 0) {
34162  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.imag);
34163  } else {
34164  double r = b.imag / b.real;
34165  double s = 1.0 / (b.real + b.imag * r);
34166  return __pyx_t_double_complex_from_parts(
34167  (a.real + a.imag * r) * s, (a.imag - a.real * r) * s);
34168  }
34169  } else {
34170  double r = b.real / b.imag;
34171  double s = 1.0 / (b.imag + b.real * r);
34172  return __pyx_t_double_complex_from_parts(
34173  (a.real * r + a.imag) * s, (a.imag * r - a.real) * s);
34174  }
34175  }
34176  #else
34177  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_quot_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
34178  if (b.imag == 0) {
34179  return __pyx_t_double_complex_from_parts(a.real / b.real, a.imag / b.real);
34180  } else {
34181  double denom = b.real * b.real + b.imag * b.imag;
34182  return __pyx_t_double_complex_from_parts(
34183  (a.real * b.real + a.imag * b.imag) / denom,
34184  (a.imag * b.real - a.real * b.imag) / denom);
34185  }
34186  }
34187  #endif
34188  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_neg_double(__pyx_t_double_complex a) {
34189  __pyx_t_double_complex z;
34190  z.real = -a.real;
34191  z.imag = -a.imag;
34192  return z;
34193  }
34194  static CYTHON_INLINE int __Pyx_c_is_zero_double(__pyx_t_double_complex a) {
34195  return (a.real == 0) && (a.imag == 0);
34196  }
34197  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_conj_double(__pyx_t_double_complex a) {
34198  __pyx_t_double_complex z;
34199  z.real = a.real;
34200  z.imag = -a.imag;
34201  return z;
34202  }
34203  #if 1
34204  static CYTHON_INLINE double __Pyx_c_abs_double(__pyx_t_double_complex z) {
34205  #if !defined(HAVE_HYPOT) || defined(_MSC_VER)
34206  return sqrt(z.real*z.real + z.imag*z.imag);
34207  #else
34208  return hypot(z.real, z.imag);
34209  #endif
34210  }
34211  static CYTHON_INLINE __pyx_t_double_complex __Pyx_c_pow_double(__pyx_t_double_complex a, __pyx_t_double_complex b) {
34212  __pyx_t_double_complex z;
34213  double r, lnr, theta, z_r, z_theta;
34214  if (b.imag == 0 && b.real == (int)b.real) {
34215  if (b.real < 0) {
34216  double denom = a.real * a.real + a.imag * a.imag;
34217  a.real = a.real / denom;
34218  a.imag = -a.imag / denom;
34219  b.real = -b.real;
34220  }
34221  switch ((int)b.real) {
34222  case 0:
34223  z.real = 1;
34224  z.imag = 0;
34225  return z;
34226  case 1:
34227  return a;
34228  case 2:
34229  z = __Pyx_c_prod_double(a, a);
34230  return __Pyx_c_prod_double(a, a);
34231  case 3:
34232  z = __Pyx_c_prod_double(a, a);
34233  return __Pyx_c_prod_double(z, a);
34234  case 4:
34235  z = __Pyx_c_prod_double(a, a);
34236  return __Pyx_c_prod_double(z, z);
34237  }
34238  }
34239  if (a.imag == 0) {
34240  if (a.real == 0) {
34241  return a;
34242  } else if (b.imag == 0) {
34243  z.real = pow(a.real, b.real);
34244  z.imag = 0;
34245  return z;
34246  } else if (a.real > 0) {
34247  r = a.real;
34248  theta = 0;
34249  } else {
34250  r = -a.real;
34251  theta = atan2(0, -1);
34252  }
34253  } else {
34254  r = __Pyx_c_abs_double(a);
34255  theta = atan2(a.imag, a.real);
34256  }
34257  lnr = log(r);
34258  z_r = exp(lnr * b.real - theta * b.imag);
34259  z_theta = theta * b.real + lnr * b.imag;
34260  z.real = z_r * cos(z_theta);
34261  z.imag = z_r * sin(z_theta);
34262  return z;
34263  }
34264  #endif
34265 #endif
34266 
34267 /* CIntToPy */
34268  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_int(int value) {
34269  const int neg_one = (int) -1, const_zero = (int) 0;
34270  const int is_unsigned = neg_one > const_zero;
34271  if (is_unsigned) {
34272  if (sizeof(int) < sizeof(long)) {
34273  return PyInt_FromLong((long) value);
34274  } else if (sizeof(int) <= sizeof(unsigned long)) {
34275  return PyLong_FromUnsignedLong((unsigned long) value);
34276 #ifdef HAVE_LONG_LONG
34277  } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
34278  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
34279 #endif
34280  }
34281  } else {
34282  if (sizeof(int) <= sizeof(long)) {
34283  return PyInt_FromLong((long) value);
34284 #ifdef HAVE_LONG_LONG
34285  } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
34286  return PyLong_FromLongLong((PY_LONG_LONG) value);
34287 #endif
34288  }
34289  }
34290  {
34291  int one = 1; int little = (int)*(unsigned char *)&one;
34292  unsigned char *bytes = (unsigned char *)&value;
34293  return _PyLong_FromByteArray(bytes, sizeof(int),
34294  little, !is_unsigned);
34295  }
34296 }
34297 
34298 /* CIntToPy */
34299  static CYTHON_INLINE PyObject* __Pyx_PyInt_From_enum__NPY_TYPES(enum NPY_TYPES value) {
34300  const enum NPY_TYPES neg_one = (enum NPY_TYPES) -1, const_zero = (enum NPY_TYPES) 0;
34301  const int is_unsigned = neg_one > const_zero;
34302  if (is_unsigned) {
34303  if (sizeof(enum NPY_TYPES) < sizeof(long)) {
34304  return PyInt_FromLong((long) value);
34305  } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned long)) {
34306  return PyLong_FromUnsignedLong((unsigned long) value);
34307 #ifdef HAVE_LONG_LONG
34308  } else if (sizeof(enum NPY_TYPES) <= sizeof(unsigned PY_LONG_LONG)) {
34309  return PyLong_FromUnsignedLongLong((unsigned PY_LONG_LONG) value);
34310 #endif
34311  }
34312  } else {
34313  if (sizeof(enum NPY_TYPES) <= sizeof(long)) {
34314  return PyInt_FromLong((long) value);
34315 #ifdef HAVE_LONG_LONG
34316  } else if (sizeof(enum NPY_TYPES) <= sizeof(PY_LONG_LONG)) {
34317  return PyLong_FromLongLong((PY_LONG_LONG) value);
34318 #endif
34319  }
34320  }
34321  {
34322  int one = 1; int little = (int)*(unsigned char *)&one;
34323  unsigned char *bytes = (unsigned char *)&value;
34324  return _PyLong_FromByteArray(bytes, sizeof(enum NPY_TYPES),
34325  little, !is_unsigned);
34326  }
34327 }
34328 
34329 /* CIntFromPy */
34330  static CYTHON_INLINE int __Pyx_PyInt_As_int(PyObject *x) {
34331  const int neg_one = (int) -1, const_zero = (int) 0;
34332  const int is_unsigned = neg_one > const_zero;
34333 #if PY_MAJOR_VERSION < 3
34334  if (likely(PyInt_Check(x))) {
34335  if (sizeof(int) < sizeof(long)) {
34336  __PYX_VERIFY_RETURN_INT(int, long, PyInt_AS_LONG(x))
34337  } else {
34338  long val = PyInt_AS_LONG(x);
34339  if (is_unsigned && unlikely(val < 0)) {
34340  goto raise_neg_overflow;
34341  }
34342  return (int) val;
34343  }
34344  } else
34345 #endif
34346  if (likely(PyLong_Check(x))) {
34347  if (is_unsigned) {
34348 #if CYTHON_USE_PYLONG_INTERNALS
34349  const digit* digits = ((PyLongObject*)x)->ob_digit;
34350  switch (Py_SIZE(x)) {
34351  case 0: return (int) 0;
34352  case 1: __PYX_VERIFY_RETURN_INT(int, digit, digits[0])
34353  case 2:
34354  if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
34355  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
34356  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34357  } else if (8 * sizeof(int) >= 2 * PyLong_SHIFT) {
34358  return (int) (((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
34359  }
34360  }
34361  break;
34362  case 3:
34363  if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
34364  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
34365  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34366  } else if (8 * sizeof(int) >= 3 * PyLong_SHIFT) {
34367  return (int) (((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
34368  }
34369  }
34370  break;
34371  case 4:
34372  if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
34373  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
34374  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34375  } else if (8 * sizeof(int) >= 4 * PyLong_SHIFT) {
34376  return (int) (((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0]));
34377  }
34378  }
34379  break;
34380  }
34381 #endif
34382 #if CYTHON_COMPILING_IN_CPYTHON
34383  if (unlikely(Py_SIZE(x) < 0)) {
34384  goto raise_neg_overflow;
34385  }
34386 #else
34387  {
34388  int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
34389  if (unlikely(result < 0))
34390  return (int) -1;
34391  if (unlikely(result == 1))
34392  goto raise_neg_overflow;
34393  }
34394 #endif
34395  if (sizeof(int) <= sizeof(unsigned long)) {
34396  __PYX_VERIFY_RETURN_INT_EXC(int, unsigned long, PyLong_AsUnsignedLong(x))
34397 #ifdef HAVE_LONG_LONG
34398  } else if (sizeof(int) <= sizeof(unsigned PY_LONG_LONG)) {
34399  __PYX_VERIFY_RETURN_INT_EXC(int, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
34400 #endif
34401  }
34402  } else {
34403 #if CYTHON_USE_PYLONG_INTERNALS
34404  const digit* digits = ((PyLongObject*)x)->ob_digit;
34405  switch (Py_SIZE(x)) {
34406  case 0: return (int) 0;
34407  case -1: __PYX_VERIFY_RETURN_INT(int, sdigit, (sdigit) (-(sdigit)digits[0]))
34408  case 1: __PYX_VERIFY_RETURN_INT(int, digit, +digits[0])
34409  case -2:
34410  if (8 * sizeof(int) - 1 > 1 * PyLong_SHIFT) {
34411  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
34412  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34413  } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
34414  return (int) (((int)-1)*(((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
34415  }
34416  }
34417  break;
34418  case 2:
34419  if (8 * sizeof(int) > 1 * PyLong_SHIFT) {
34420  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
34421  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34422  } else if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
34423  return (int) ((((((int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
34424  }
34425  }
34426  break;
34427  case -3:
34428  if (8 * sizeof(int) - 1 > 2 * PyLong_SHIFT) {
34429  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
34430  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34431  } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
34432  return (int) (((int)-1)*(((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
34433  }
34434  }
34435  break;
34436  case 3:
34437  if (8 * sizeof(int) > 2 * PyLong_SHIFT) {
34438  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
34439  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34440  } else if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
34441  return (int) ((((((((int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
34442  }
34443  }
34444  break;
34445  case -4:
34446  if (8 * sizeof(int) - 1 > 3 * PyLong_SHIFT) {
34447  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
34448  __PYX_VERIFY_RETURN_INT(int, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34449  } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
34450  return (int) (((int)-1)*(((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
34451  }
34452  }
34453  break;
34454  case 4:
34455  if (8 * sizeof(int) > 3 * PyLong_SHIFT) {
34456  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
34457  __PYX_VERIFY_RETURN_INT(int, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34458  } else if (8 * sizeof(int) - 1 > 4 * PyLong_SHIFT) {
34459  return (int) ((((((((((int)digits[3]) << PyLong_SHIFT) | (int)digits[2]) << PyLong_SHIFT) | (int)digits[1]) << PyLong_SHIFT) | (int)digits[0])));
34460  }
34461  }
34462  break;
34463  }
34464 #endif
34465  if (sizeof(int) <= sizeof(long)) {
34466  __PYX_VERIFY_RETURN_INT_EXC(int, long, PyLong_AsLong(x))
34467 #ifdef HAVE_LONG_LONG
34468  } else if (sizeof(int) <= sizeof(PY_LONG_LONG)) {
34469  __PYX_VERIFY_RETURN_INT_EXC(int, PY_LONG_LONG, PyLong_AsLongLong(x))
34470 #endif
34471  }
34472  }
34473  {
34474 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
34475  PyErr_SetString(PyExc_RuntimeError,
34476  "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
34477 #else
34478  int val;
34479  PyObject *v = __Pyx_PyNumber_IntOrLong(x);
34480  #if PY_MAJOR_VERSION < 3
34481  if (likely(v) && !PyLong_Check(v)) {
34482  PyObject *tmp = v;
34483  v = PyNumber_Long(tmp);
34484  Py_DECREF(tmp);
34485  }
34486  #endif
34487  if (likely(v)) {
34488  int one = 1; int is_little = (int)*(unsigned char *)&one;
34489  unsigned char *bytes = (unsigned char *)&val;
34490  int ret = _PyLong_AsByteArray((PyLongObject *)v,
34491  bytes, sizeof(val),
34492  is_little, !is_unsigned);
34493  Py_DECREF(v);
34494  if (likely(!ret))
34495  return val;
34496  }
34497 #endif
34498  return (int) -1;
34499  }
34500  } else {
34501  int val;
34502  PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
34503  if (!tmp) return (int) -1;
34504  val = __Pyx_PyInt_As_int(tmp);
34505  Py_DECREF(tmp);
34506  return val;
34507  }
34508 raise_overflow:
34509  PyErr_SetString(PyExc_OverflowError,
34510  "value too large to convert to int");
34511  return (int) -1;
34512 raise_neg_overflow:
34513  PyErr_SetString(PyExc_OverflowError,
34514  "can't convert negative value to int");
34515  return (int) -1;
34516 }
34517 
34518 /* CIntFromPy */
34519  static CYTHON_INLINE long __Pyx_PyInt_As_long(PyObject *x) {
34520  const long neg_one = (long) -1, const_zero = (long) 0;
34521  const int is_unsigned = neg_one > const_zero;
34522 #if PY_MAJOR_VERSION < 3
34523  if (likely(PyInt_Check(x))) {
34524  if (sizeof(long) < sizeof(long)) {
34525  __PYX_VERIFY_RETURN_INT(long, long, PyInt_AS_LONG(x))
34526  } else {
34527  long val = PyInt_AS_LONG(x);
34528  if (is_unsigned && unlikely(val < 0)) {
34529  goto raise_neg_overflow;
34530  }
34531  return (long) val;
34532  }
34533  } else
34534 #endif
34535  if (likely(PyLong_Check(x))) {
34536  if (is_unsigned) {
34537 #if CYTHON_USE_PYLONG_INTERNALS
34538  const digit* digits = ((PyLongObject*)x)->ob_digit;
34539  switch (Py_SIZE(x)) {
34540  case 0: return (long) 0;
34541  case 1: __PYX_VERIFY_RETURN_INT(long, digit, digits[0])
34542  case 2:
34543  if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
34544  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
34545  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34546  } else if (8 * sizeof(long) >= 2 * PyLong_SHIFT) {
34547  return (long) (((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
34548  }
34549  }
34550  break;
34551  case 3:
34552  if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
34553  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
34554  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34555  } else if (8 * sizeof(long) >= 3 * PyLong_SHIFT) {
34556  return (long) (((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
34557  }
34558  }
34559  break;
34560  case 4:
34561  if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
34562  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
34563  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34564  } else if (8 * sizeof(long) >= 4 * PyLong_SHIFT) {
34565  return (long) (((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0]));
34566  }
34567  }
34568  break;
34569  }
34570 #endif
34571 #if CYTHON_COMPILING_IN_CPYTHON
34572  if (unlikely(Py_SIZE(x) < 0)) {
34573  goto raise_neg_overflow;
34574  }
34575 #else
34576  {
34577  int result = PyObject_RichCompareBool(x, Py_False, Py_LT);
34578  if (unlikely(result < 0))
34579  return (long) -1;
34580  if (unlikely(result == 1))
34581  goto raise_neg_overflow;
34582  }
34583 #endif
34584  if (sizeof(long) <= sizeof(unsigned long)) {
34585  __PYX_VERIFY_RETURN_INT_EXC(long, unsigned long, PyLong_AsUnsignedLong(x))
34586 #ifdef HAVE_LONG_LONG
34587  } else if (sizeof(long) <= sizeof(unsigned PY_LONG_LONG)) {
34588  __PYX_VERIFY_RETURN_INT_EXC(long, unsigned PY_LONG_LONG, PyLong_AsUnsignedLongLong(x))
34589 #endif
34590  }
34591  } else {
34592 #if CYTHON_USE_PYLONG_INTERNALS
34593  const digit* digits = ((PyLongObject*)x)->ob_digit;
34594  switch (Py_SIZE(x)) {
34595  case 0: return (long) 0;
34596  case -1: __PYX_VERIFY_RETURN_INT(long, sdigit, (sdigit) (-(sdigit)digits[0]))
34597  case 1: __PYX_VERIFY_RETURN_INT(long, digit, +digits[0])
34598  case -2:
34599  if (8 * sizeof(long) - 1 > 1 * PyLong_SHIFT) {
34600  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
34601  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34602  } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
34603  return (long) (((long)-1)*(((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
34604  }
34605  }
34606  break;
34607  case 2:
34608  if (8 * sizeof(long) > 1 * PyLong_SHIFT) {
34609  if (8 * sizeof(unsigned long) > 2 * PyLong_SHIFT) {
34610  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34611  } else if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
34612  return (long) ((((((long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
34613  }
34614  }
34615  break;
34616  case -3:
34617  if (8 * sizeof(long) - 1 > 2 * PyLong_SHIFT) {
34618  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
34619  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34620  } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
34621  return (long) (((long)-1)*(((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
34622  }
34623  }
34624  break;
34625  case 3:
34626  if (8 * sizeof(long) > 2 * PyLong_SHIFT) {
34627  if (8 * sizeof(unsigned long) > 3 * PyLong_SHIFT) {
34628  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34629  } else if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
34630  return (long) ((((((((long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
34631  }
34632  }
34633  break;
34634  case -4:
34635  if (8 * sizeof(long) - 1 > 3 * PyLong_SHIFT) {
34636  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
34637  __PYX_VERIFY_RETURN_INT(long, long, -(long) (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34638  } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
34639  return (long) (((long)-1)*(((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
34640  }
34641  }
34642  break;
34643  case 4:
34644  if (8 * sizeof(long) > 3 * PyLong_SHIFT) {
34645  if (8 * sizeof(unsigned long) > 4 * PyLong_SHIFT) {
34646  __PYX_VERIFY_RETURN_INT(long, unsigned long, (((((((((unsigned long)digits[3]) << PyLong_SHIFT) | (unsigned long)digits[2]) << PyLong_SHIFT) | (unsigned long)digits[1]) << PyLong_SHIFT) | (unsigned long)digits[0])))
34647  } else if (8 * sizeof(long) - 1 > 4 * PyLong_SHIFT) {
34648  return (long) ((((((((((long)digits[3]) << PyLong_SHIFT) | (long)digits[2]) << PyLong_SHIFT) | (long)digits[1]) << PyLong_SHIFT) | (long)digits[0])));
34649  }
34650  }
34651  break;
34652  }
34653 #endif
34654  if (sizeof(long) <= sizeof(long)) {
34655  __PYX_VERIFY_RETURN_INT_EXC(long, long, PyLong_AsLong(x))
34656 #ifdef HAVE_LONG_LONG
34657  } else if (sizeof(long) <= sizeof(PY_LONG_LONG)) {
34658  __PYX_VERIFY_RETURN_INT_EXC(long, PY_LONG_LONG, PyLong_AsLongLong(x))
34659 #endif
34660  }
34661  }
34662  {
34663 #if CYTHON_COMPILING_IN_PYPY && !defined(_PyLong_AsByteArray)
34664  PyErr_SetString(PyExc_RuntimeError,
34665  "_PyLong_AsByteArray() not available in PyPy, cannot convert large numbers");
34666 #else
34667  long val;
34668  PyObject *v = __Pyx_PyNumber_IntOrLong(x);
34669  #if PY_MAJOR_VERSION < 3
34670  if (likely(v) && !PyLong_Check(v)) {
34671  PyObject *tmp = v;
34672  v = PyNumber_Long(tmp);
34673  Py_DECREF(tmp);
34674  }
34675  #endif
34676  if (likely(v)) {
34677  int one = 1; int is_little = (int)*(unsigned char *)&one;
34678  unsigned char *bytes = (unsigned char *)&val;
34679  int ret = _PyLong_AsByteArray((PyLongObject *)v,
34680  bytes, sizeof(val),
34681  is_little, !is_unsigned);
34682  Py_DECREF(v);
34683  if (likely(!ret))
34684  return val;
34685  }
34686 #endif
34687  return (long) -1;
34688  }
34689  } else {
34690  long val;
34691  PyObject *tmp = __Pyx_PyNumber_IntOrLong(x);
34692  if (!tmp) return (long) -1;
34693  val = __Pyx_PyInt_As_long(tmp);
34694  Py_DECREF(tmp);
34695  return val;
34696  }
34697 raise_overflow:
34698  PyErr_SetString(PyExc_OverflowError,
34699  "value too large to convert to long");
34700  return (long) -1;
34701 raise_neg_overflow:
34702  PyErr_SetString(PyExc_OverflowError,
34703  "can't convert negative value to long");
34704  return (long) -1;
34705 }
34706 
34707 /* CheckBinaryVersion */
34708  static int __Pyx_check_binary_version(void) {
34709  char ctversion[4], rtversion[4];
34710  PyOS_snprintf(ctversion, 4, "%d.%d", PY_MAJOR_VERSION, PY_MINOR_VERSION);
34711  PyOS_snprintf(rtversion, 4, "%s", Py_GetVersion());
34712  if (ctversion[0] != rtversion[0] || ctversion[2] != rtversion[2]) {
34713  char message[200];
34714  PyOS_snprintf(message, sizeof(message),
34715  "compiletime version %s of module '%.100s' "
34716  "does not match runtime version %s",
34717  ctversion, __Pyx_MODULE_NAME, rtversion);
34718  return PyErr_WarnEx(NULL, message, 1);
34719  }
34720  return 0;
34721 }
34722 
34723 /* ModuleImport */
34724  #ifndef __PYX_HAVE_RT_ImportModule
34725 #define __PYX_HAVE_RT_ImportModule
34726 static PyObject *__Pyx_ImportModule(const char *name) {
34727  PyObject *py_name = 0;
34728  PyObject *py_module = 0;
34729  py_name = __Pyx_PyIdentifier_FromString(name);
34730  if (!py_name)
34731  goto bad;
34732  py_module = PyImport_Import(py_name);
34733  Py_DECREF(py_name);
34734  return py_module;
34735 bad:
34736  Py_XDECREF(py_name);
34737  return 0;
34738 }
34739 #endif
34740 
34741 /* TypeImport */
34742  #ifndef __PYX_HAVE_RT_ImportType
34743 #define __PYX_HAVE_RT_ImportType
34744 static PyTypeObject *__Pyx_ImportType(const char *module_name, const char *class_name,
34745  size_t size, int strict)
34746 {
34747  PyObject *py_module = 0;
34748  PyObject *result = 0;
34749  PyObject *py_name = 0;
34750  char warning[200];
34751  Py_ssize_t basicsize;
34752 #ifdef Py_LIMITED_API
34753  PyObject *py_basicsize;
34754 #endif
34755  py_module = __Pyx_ImportModule(module_name);
34756  if (!py_module)
34757  goto bad;
34758  py_name = __Pyx_PyIdentifier_FromString(class_name);
34759  if (!py_name)
34760  goto bad;
34761  result = PyObject_GetAttr(py_module, py_name);
34762  Py_DECREF(py_name);
34763  py_name = 0;
34764  Py_DECREF(py_module);
34765  py_module = 0;
34766  if (!result)
34767  goto bad;
34768  if (!PyType_Check(result)) {
34769  PyErr_Format(PyExc_TypeError,
34770  "%.200s.%.200s is not a type object",
34771  module_name, class_name);
34772  goto bad;
34773  }
34774 #ifndef Py_LIMITED_API
34775  basicsize = ((PyTypeObject *)result)->tp_basicsize;
34776 #else
34777  py_basicsize = PyObject_GetAttrString(result, "__basicsize__");
34778  if (!py_basicsize)
34779  goto bad;
34780  basicsize = PyLong_AsSsize_t(py_basicsize);
34781  Py_DECREF(py_basicsize);
34782  py_basicsize = 0;
34783  if (basicsize == (Py_ssize_t)-1 && PyErr_Occurred())
34784  goto bad;
34785 #endif
34786  if (!strict && (size_t)basicsize > size) {
34787  PyOS_snprintf(warning, sizeof(warning),
34788  "%s.%s size changed, may indicate binary incompatibility. Expected %zd, got %zd",
34789  module_name, class_name, basicsize, size);
34790  if (PyErr_WarnEx(NULL, warning, 0) < 0) goto bad;
34791  }
34792  else if ((size_t)basicsize != size) {
34793  PyErr_Format(PyExc_ValueError,
34794  "%.200s.%.200s has the wrong size, try recompiling. Expected %zd, got %zd",
34795  module_name, class_name, basicsize, size);
34796  goto bad;
34797  }
34798  return (PyTypeObject *)result;
34799 bad:
34800  Py_XDECREF(py_module);
34801  Py_XDECREF(result);
34802  return NULL;
34803 }
34804 #endif
34805 
34806 /* InitStrings */
34807  static int __Pyx_InitStrings(__Pyx_StringTabEntry *t) {
34808  while (t->p) {
34809  #if PY_MAJOR_VERSION < 3
34810  if (t->is_unicode) {
34811  *t->p = PyUnicode_DecodeUTF8(t->s, t->n - 1, NULL);
34812  } else if (t->intern) {
34813  *t->p = PyString_InternFromString(t->s);
34814  } else {
34815  *t->p = PyString_FromStringAndSize(t->s, t->n - 1);
34816  }
34817  #else
34818  if (t->is_unicode | t->is_str) {
34819  if (t->intern) {
34820  *t->p = PyUnicode_InternFromString(t->s);
34821  } else if (t->encoding) {
34822  *t->p = PyUnicode_Decode(t->s, t->n - 1, t->encoding, NULL);
34823  } else {
34824  *t->p = PyUnicode_FromStringAndSize(t->s, t->n - 1);
34825  }
34826  } else {
34827  *t->p = PyBytes_FromStringAndSize(t->s, t->n - 1);
34828  }
34829  #endif
34830  if (!*t->p)
34831  return -1;
34832  ++t;
34833  }
34834  return 0;
34835 }
34836 
34837 static CYTHON_INLINE PyObject* __Pyx_PyUnicode_FromString(const char* c_str) {
34838  return __Pyx_PyUnicode_FromStringAndSize(c_str, (Py_ssize_t)strlen(c_str));
34839 }
34840 static CYTHON_INLINE char* __Pyx_PyObject_AsString(PyObject* o) {
34841  Py_ssize_t ignore;
34842  return __Pyx_PyObject_AsStringAndSize(o, &ignore);
34843 }
34844 static CYTHON_INLINE char* __Pyx_PyObject_AsStringAndSize(PyObject* o, Py_ssize_t *length) {
34845 #if CYTHON_COMPILING_IN_CPYTHON && (__PYX_DEFAULT_STRING_ENCODING_IS_ASCII || __PYX_DEFAULT_STRING_ENCODING_IS_DEFAULT)
34846  if (
34847 #if PY_MAJOR_VERSION < 3 && __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
34848  __Pyx_sys_getdefaultencoding_not_ascii &&
34849 #endif
34850  PyUnicode_Check(o)) {
34851 #if PY_VERSION_HEX < 0x03030000
34852  char* defenc_c;
34853  PyObject* defenc = _PyUnicode_AsDefaultEncodedString(o, NULL);
34854  if (!defenc) return NULL;
34855  defenc_c = PyBytes_AS_STRING(defenc);
34856 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
34857  {
34858  char* end = defenc_c + PyBytes_GET_SIZE(defenc);
34859  char* c;
34860  for (c = defenc_c; c < end; c++) {
34861  if ((unsigned char) (*c) >= 128) {
34862  PyUnicode_AsASCIIString(o);
34863  return NULL;
34864  }
34865  }
34866  }
34867 #endif
34868  *length = PyBytes_GET_SIZE(defenc);
34869  return defenc_c;
34870 #else
34871  if (__Pyx_PyUnicode_READY(o) == -1) return NULL;
34872 #if __PYX_DEFAULT_STRING_ENCODING_IS_ASCII
34873  if (PyUnicode_IS_ASCII(o)) {
34874  *length = PyUnicode_GET_LENGTH(o);
34875  return PyUnicode_AsUTF8(o);
34876  } else {
34877  PyUnicode_AsASCIIString(o);
34878  return NULL;
34879  }
34880 #else
34881  return PyUnicode_AsUTF8AndSize(o, length);
34882 #endif
34883 #endif
34884  } else
34885 #endif
34886 #if (!CYTHON_COMPILING_IN_PYPY) || (defined(PyByteArray_AS_STRING) && defined(PyByteArray_GET_SIZE))
34887  if (PyByteArray_Check(o)) {
34888  *length = PyByteArray_GET_SIZE(o);
34889  return PyByteArray_AS_STRING(o);
34890  } else
34891 #endif
34892  {
34893  char* result;
34894  int r = PyBytes_AsStringAndSize(o, &result, length);
34895  if (unlikely(r < 0)) {
34896  return NULL;
34897  } else {
34898  return result;
34899  }
34900  }
34901 }
34902 static CYTHON_INLINE int __Pyx_PyObject_IsTrue(PyObject* x) {
34903  int is_true = x == Py_True;
34904  if (is_true | (x == Py_False) | (x == Py_None)) return is_true;
34905  else return PyObject_IsTrue(x);
34906 }
34907 static CYTHON_INLINE PyObject* __Pyx_PyNumber_IntOrLong(PyObject* x) {
34908 #if CYTHON_USE_TYPE_SLOTS
34909  PyNumberMethods *m;
34910 #endif
34911  const char *name = NULL;
34912  PyObject *res = NULL;
34913 #if PY_MAJOR_VERSION < 3
34914  if (PyInt_Check(x) || PyLong_Check(x))
34915 #else
34916  if (PyLong_Check(x))
34917 #endif
34918  return __Pyx_NewRef(x);
34919 #if CYTHON_USE_TYPE_SLOTS
34920  m = Py_TYPE(x)->tp_as_number;
34921  #if PY_MAJOR_VERSION < 3
34922  if (m && m->nb_int) {
34923  name = "int";
34924  res = PyNumber_Int(x);
34925  }
34926  else if (m && m->nb_long) {
34927  name = "long";
34928  res = PyNumber_Long(x);
34929  }
34930  #else
34931  if (m && m->nb_int) {
34932  name = "int";
34933  res = PyNumber_Long(x);
34934  }
34935  #endif
34936 #else
34937  res = PyNumber_Int(x);
34938 #endif
34939  if (res) {
34940 #if PY_MAJOR_VERSION < 3
34941  if (!PyInt_Check(res) && !PyLong_Check(res)) {
34942 #else
34943  if (!PyLong_Check(res)) {
34944 #endif
34945  PyErr_Format(PyExc_TypeError,
34946  "__%.4s__ returned non-%.4s (type %.200s)",
34947  name, name, Py_TYPE(res)->tp_name);
34948  Py_DECREF(res);
34949  return NULL;
34950  }
34951  }
34952  else if (!PyErr_Occurred()) {
34953  PyErr_SetString(PyExc_TypeError,
34954  "an integer is required");
34955  }
34956  return res;
34957 }
34958 static CYTHON_INLINE Py_ssize_t __Pyx_PyIndex_AsSsize_t(PyObject* b) {
34959  Py_ssize_t ival;
34960  PyObject *x;
34961 #if PY_MAJOR_VERSION < 3
34962  if (likely(PyInt_CheckExact(b))) {
34963  if (sizeof(Py_ssize_t) >= sizeof(long))
34964  return PyInt_AS_LONG(b);
34965  else
34966  return PyInt_AsSsize_t(x);
34967  }
34968 #endif
34969  if (likely(PyLong_CheckExact(b))) {
34970  #if CYTHON_USE_PYLONG_INTERNALS
34971  const digit* digits = ((PyLongObject*)b)->ob_digit;
34972  const Py_ssize_t size = Py_SIZE(b);
34973  if (likely(__Pyx_sst_abs(size) <= 1)) {
34974  ival = likely(size) ? digits[0] : 0;
34975  if (size == -1) ival = -ival;
34976  return ival;
34977  } else {
34978  switch (size) {
34979  case 2:
34980  if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
34981  return (Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
34982  }
34983  break;
34984  case -2:
34985  if (8 * sizeof(Py_ssize_t) > 2 * PyLong_SHIFT) {
34986  return -(Py_ssize_t) (((((size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
34987  }
34988  break;
34989  case 3:
34990  if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
34991  return (Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
34992  }
34993  break;
34994  case -3:
34995  if (8 * sizeof(Py_ssize_t) > 3 * PyLong_SHIFT) {
34996  return -(Py_ssize_t) (((((((size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
34997  }
34998  break;
34999  case 4:
35000  if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
35001  return (Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
35002  }
35003  break;
35004  case -4:
35005  if (8 * sizeof(Py_ssize_t) > 4 * PyLong_SHIFT) {
35006  return -(Py_ssize_t) (((((((((size_t)digits[3]) << PyLong_SHIFT) | (size_t)digits[2]) << PyLong_SHIFT) | (size_t)digits[1]) << PyLong_SHIFT) | (size_t)digits[0]));
35007  }
35008  break;
35009  }
35010  }
35011  #endif
35012  return PyLong_AsSsize_t(b);
35013  }
35014  x = PyNumber_Index(b);
35015  if (!x) return -1;
35016  ival = PyInt_AsSsize_t(x);
35017  Py_DECREF(x);
35018  return ival;
35019 }
35020 static CYTHON_INLINE PyObject * __Pyx_PyInt_FromSize_t(size_t ival) {
35021  return PyInt_FromSize_t(ival);
35022 }
35023 
35024 
35025 #endif /* Py_PYTHON_H */
f
double f(double C, double b, double a, int q, int r)
Definition: analyticalSolutions.c:2193
ADR.h
proteus::newADR
cppADR_base * newADR(int nSpaceIn, int nQuadraturePoints_elementIn, int nDOF_mesh_trial_elementIn, int nDOF_trial_elementIn, int nDOF_test_elementIn, int nQuadraturePoints_elementBoundaryIn, int CompKernelFlag)
Definition: ADR.h:1379
PyMODINIT_FUNC
#define PyMODINIT_FUNC
Definition: flcbdfWrappersModule.cpp:7215
proteus::cppADR_base
Definition: ADR.h:10
Generated on Tue Sep 18 2018 16:12:27 for proteus by   doxygen 1.8.13